Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018403086.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_753.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5475
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.25
Warning! 1592 characters in sequence are not A, C, G, or T
Found at i:478 original size:172 final size:172
Alignment explanation
Indices: 5--689 Score: 695
Period size: 172 Copynumber: 4.0 Consensus size: 172
1 ATAG
* * * * * * * * *
5 ACTTTTCTTGCCAATGAAT-ACTTTTTTCTTTATGTTTCTAAAGGTAGGCAATCAATTTTAGTCT
1 ACTTTTCTTGCCAATGAATGTC-CTTTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATAT
** * * * * * *
69 GTTTTAATAAAAAATG-ACTGAAGAA-TTCAAATCT-AAATTAATTTTGAGATTACAAAACTATT
65 GTTTTAACCAAAAATGTA--AAAAAATTTCAACT-TAAAATCAATTTTGAGATTATAAAACCATT
* * * * * *
131 TAAACTGAGTAATAAGGCTTTTAAAGGAATAGGTGACCATAAATGG
127 TAAAGTAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGA
* * * *
177 ACTTTTCTTGCCAATGAATGT-CTTTT-TTTCACGTTTCTTAAGCTAGACATTCAGTTAGAATAT
1 ACTTTTCTTGCCAATGAATGTCCTTTTCTTT-ACGTTTCTCAAGGTAGACATTCAATTATAATAT
* * * * * * *
240 GTTTTAACAAAAAATGTAAAATAATTTGAACTTAAAATGAATCTTGAGATGATAAAAGCATTTAA
65 GTTTTAACCAAAAATGTAAAAAAATTTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTAA
* * * *
305 AGTAAGTAATAAGGCTTTTGAAGCAATGGGCGACTGTAAATAA
130 AGTAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGA
* * *
348 AGTTTTCTTGCCAATGAATGTCCTTTTCTTTACATTTCTCAAGGTAGACATTCAATTATAATTTG
1 ACTTTTCTTGCCAATGAATGTCCTTTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATATG
* * *
413 TTTTAACCAAAAATCTAAAAAAATTTCAACTTAGAATCTATTTTGAGATTATAAAACCATTTAAA
66 TTTTAACCAAAAATGTAAAAAAATTTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAA
* * * * *
478 GTGAGCAATAACGCTTTAGAAGGAATGAGTGACTATAAATGA
131 GTAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGA
* * *
520 ACTTTTCTTGCCAATGAATG-CCTTTTTCTTTATGTTTCTCAAGGTAGACATTCAATTATAGTCT
1 ACTTTTCTTGCCAATGAATGTCC-TTTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATAT
* * * *
584 ATTTCAGCCAAAAATGTAAAAAAA-TTCAACTTAAAATCAATTATT-AGTTTATAAAACCATTTA
65 GTTTTAACCAAAAATGTAAAAAAATTTCAACTTAAAATCAATT-TTGAGATTATAAAACCATTTA
* * ** *
647 AAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATG
129 AAGTAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATG
690 GTCTTTTTGT
Statistics
Matches: 426, Mismatches: 78, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
170 8 0.02
171 196 0.46
172 219 0.51
173 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (172 bp):
ACTTTTCTTGCCAATGAATGTCCTTTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATATG
TTTTAACCAAAAATGTAAAAAAATTTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAA
GTAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGA
Found at i:2714 original size:173 final size:172
Alignment explanation
Indices: 1967--3418 Score: 1262
Period size: 172 Copynumber: 8.5 Consensus size: 172
1957 NNNNNNNNNN
* * *
1967 ATTCAACTTAAAATCAATTATT-AGTTTATAAAACCATTTAAAGCT-AGTAATAAGGCTTTCGAA
1 ATTCAACTTAAAATCAATT-TTGAGATTATAAAACTATTTAAAG-TAAGTAATAAGGCTTTTGAA
* * * * ** * *
2030 -GACTTGAGTGACTATAAATGGTCTTTT-TGTGCTAATGGTTAG-CTTTTGT-TTCA-AGTTCCT
64 GGA-ATGGGTGACTATAAATGGACTTTTCT-TGCCAATGAAT-GCCTTTT-TCTTTATA-TTTCT
** * * * *
2090 C-AGGGCGAGCACTCAATTATAGCCTTTTTTAACCAAAAATATA-AAA-A
124 CAAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * *
2137 ATTCAACTTAAAATCAATTTTGAGATTATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
1 ATTCAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGG
* * ** * ** * * * *
2202 CATGAGCAACTATAAATGGACTATTCTTGTTAATGAGTGCCTTCTTCTTCATGTTTC-CTAAGGT
66 AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTTATATTTCTC-AAGGT
* * * * * ** *
2266 AAATATTCAATTATAATCTATTTTGACCAAAAACAT-CAAAAA
130 AGACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * * * *
2308 ATTCAA-TCTAAAATCAATTATGAGGTTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAA
1 ATTCAACT-TAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAG
* * * *
2372 GAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAAT-TCTTTTT-TTCTCAGT-TTTCTCGA
65 GAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTT-T-A-TATTTCTCAA
* * * * * * *
2434 GGTGGACATTCTATTATAATCTCTTTTAACAAAAAATATACAAATA
127 GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * * * * *
2480 ATTCAAATTTAAATCAATTTGGAGAATATAAAGCCATTTAAAGTAAGTAATAAGGCTTTTGAAGG
1 ATTCAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGG
* * * * * * **
2545 AATAGGTGACTATCAATGTACTTTTTTTACCATTTG-ATGCCTTTTTCTTTATGGTTCTCAAGGT
66 AATGGGTGACTATAAATGGACTTTTCTTGCCA-ATGAATGCCTTTTTCTTTATATTTCTCAAGGT
* * * * *
2609 AGACATTTAATTATAGTTTGTTTTAACCTAAAATGTAAAAAAA
130 AGACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * * *
2652 ATTCAACCTTAAAATCAATTATG-GCATTACAAAACTATTAAAAGCAAGTAATAAGGCTTTTGAA
1 ATTCAA-CTTAAAATCAATTTTGAG-ATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAA
* * * * *
2716 GGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTCCTTTTTCGTCATATTTTTCAAGG
64 GGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTTATATTTCTCAAGG
* * * *
2781 TAGACATTCAATTATAATATGTTTTAACCAAAAATATACAGAGA
129 TAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * * * * *
2825 ATTCAAATTTAAATCAATTTTGAGAATATAAAACTATTTAAAGTGAGTAATAAGGCTTTTAAAGT
1 ATTCAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGG
* ** **
2890 AATGGGTGACTATAAATGGACTTTTCTTGCCAACGAATGCCTTTTTCTTTACGTTTCTTGAGGTA
66 AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTTATATTTCTCAAGGTA
* *
2955 GACATTGAATTATAGTCTGTTTTAACCAAAAACT-TA-AAAAA
131 GACATTCAATTATAGTCTGTTTTAACCAAAAA-TGTACAAAGA
* * * * * * * *
2996 ATTCAATTGTAAAATGAGTTATG-GCATTACAAAAGTGTTTAAAGCAAGTAATAAGGCTTTTGAA
1 ATTCAACT-TAAAATCAATTTTGAG-ATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAA
* * ** * * * * * * *
3060 GGTACGGAAGACTATAAATGGAGTTTTCTTACAAATGAATACTTTTTTCTTCATTTTTCTCAAGG
64 GGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTTATATTTCTCAAGG
* * * * *
3125 CAAACATTAAATTCTAGTCTATTTTAACCAAAAATGTACAAAGA
129 TAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * * * * *
3169 ATTTAAACAT-AAATCAATTTTGAGATTATAAATCCATTTAAAGTGAGTAATAAAGCTTTTGAA-
1 A-TTCAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAG
* *
3232 GATATGGGTGACTATAAATGGGCTTTTCTTGCCAATGAATTCC-TTTTCTTTATATTTCTCAAGG
65 GA-ATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTTATATTTCTCAAGG
* * * *
3296 TAAACCTTCAATTATAATCCGTTTTAACCAAAAATGTACAAAGA
129 TAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
* * * * *
3340 ATTCAA-TTTAAATCAATTTTGAGAATATAAAACTATTTAAAGTGAGTAATAAGACTTTGGAAGG
1 ATTCAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGG
*
3404 TATGGGTGACTATAA
66 AATGGGTGACTATAA
3419 NNNNNNNNNN
Statistics
Matches: 1034, Mismatches: 212, Indels: 72
0.78 0.16 0.05
Matches are distributed among these distances:
169 9 0.01
170 193 0.19
171 205 0.20
172 466 0.45
173 155 0.15
174 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (172 bp):
ATTCAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGG
AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTTATATTTCTCAAGGTA
GACATTCAATTATAGTCTGTTTTAACCAAAAATGTACAAAGA
Found at i:2789 original size:345 final size:341
Alignment explanation
Indices: 1967--3418 Score: 1451
Period size: 345 Copynumber: 4.2 Consensus size: 341
1957 NNNNNNNNNN
* * * * * *
1967 ATTCAACTTAAAATCAATTATTAGTTTATAAAACCATTTAAAGCTAGTAATAAGGCTTTCGAAGA
1 ATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAAG-
* * * * * * **
2032 CT-TGAGTGACTATAAATGGTCTTTT-TGTGCTAATG-GTTAGCTTTTGTT-TCAAGTTCCTC-A
65 GTATGGGTGACTATAAATGGACTTTTCT-TGCCAATGAATT--CTTTT-TTCTC-ATTTTTTCAA
** * ** * * *
2092 GGGCGAGCACTCAATTATAGCCTTTTTTAACCAAAAATATA-AAA-AATTCAACTTAAAATCAAT
125 GGTAGA-CATTCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAATTTAAATCAAT
* * * **
2155 TTTGAGATTATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGCAACTATAAATG
189 TTTGAGAATATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATG
* *** * * * *
2220 GACTATTCTTGTTAATGAGTGCCTTCTTCTTCATGTTTC-CTAAGGTAAATATTCAATTATAATC
254 GACTTTTCTTACCAATGAATGCCTTTTTCTTTATGTTTCTC-AAGGTAAACATTCAATTATAATC
* * ** *
2284 TATTTTGACCAAAAACATCAAAAA
318 TGTTTTAACCAAAAATGTAAAAAA
* * * ** *
2308 ATTCAA-TCTAAAATCAATTATGAGGTTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAA
1 ATTCAACT-TAAAATCAATTATGAGATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAAG
* * * * *
2372 GAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATTCTTTTTTTCTCAGTTTTCTCGAGGT
65 GTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTC-TTTTTTCTCA-TTTTTTCAAGGT
* * * * * *
2437 GGACATTCTATTATAATCTCTTTTAACAAAAAATATACAAATAATTCAAATTTAAATCAATTTGG
128 AGACATTCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAATTTAAATCAATTTTG
* * * *
2502 AGAATATAAAGCCATTTAAAGTAAGTAATAAGGCTTTTGAAGGAATAGGTGACTATCAATGTACT
193 AGAATATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACT
* * * * * * *
2567 TTTTTTACCATTTG-ATGCCTTTTTCTTTATGGTTCTCAAGGTAGACATTTAATTATAGTTTGTT
258 TTTCTTACCA-ATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTT
*
2631 TTAACCTAAAATGTAAAAAAA
322 TTAACCAAAAATGT-AAAAAA
*
2652 ATTCAACCTTAAAATCAATTATG-GCATTACAAAACTATTAAAAGCAAGTAATAAGGCTTTTGAA
1 ATTCAA-CTTAAAATCAATTATGAG-ATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAA
*
2716 GGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTCCTTTTTCGTCATATTTTTCAAGG
64 GGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTC-TCAT-TTTTTCAAGG
* * *
2781 TAGACATTCAATTATAATATGTTTTAACCAAAAATATACAGAGAATTCAAATTTAAATCAATTTT
127 TAGACATTCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAATTTAAATCAATTTT
* * * *
2846 GAGAATATAAAACTATTTAAAGTGAGTAATAAGGCTTTTAAAGTAATGGGTGACTATAAATGGAC
192 GAGAATATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * ** * * *
2911 TTTTCTTGCCAACGAATGCCTTTTTCTTTACGTTTCTTGAGGTAGACATTGAATTATAGTCTGTT
257 TTTTCTTACCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTT
2976 TTAACCAAAAACT-TAAAAAA
322 TTAACCAAAAA-TGTAAAAAA
* * * * *
2996 ATTCAATTGTAAAATGAGTTATG-GCATTACAAAAGTGTTTAAAGCAAGTAATAAGGCTTTTGAA
1 ATTCAACT-TAAAATCAATTATGAG-ATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAA
* ** * * * *
3060 GGTACGGAAGACTATAAATGGAGTTTTCTTACAAATGAATACTTTTTTCTTCATTTTTCTCAAGG
64 GGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTC-TCATTTTT-TCAAGG
* * * * * * * **
3125 CAAACATTAAATTCTAGTCTATTTTAACCAAAAATGTACAAAGAATTTAAACATAAATCAATTTT
127 TAGACATTCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAATTTAAATCAATTTT
* * * *
3190 GAGATTATAAATCCATTTAAAGTGAGTAATAAAGCTTTTGAA-GATATGGGTGACTATAAATGGG
192 GAGAATATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGA-ATGGGTGACTATAAATGGA
* * * * *
3254 CTTTTCTTGCCAATGAATTCC-TTTTCTTTATATTTCTCAAGGTAAACCTTCAATTATAATCCGT
256 CTTTTCTTACCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGT
*
3318 TTTAACCAAAAATGTACAAAGA
321 TTTAACCAAAAATGTA-AAAAA
* * * * ** * *
3340 ATTCAA-TTTAAATCAATTTTGAGAATATAAAACTATTTAAAGTGAGTAATAAGACTTTGGAAGG
1 ATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAAGG
3404 TATGGGTGACTATAA
66 TATGGGTGACTATAA
3419 NNNNNNNNNN
Statistics
Matches: 929, Mismatches: 156, Indels: 51
0.82 0.14 0.04
Matches are distributed among these distances:
340 5 0.01
341 123 0.13
342 67 0.07
343 185 0.20
344 273 0.29
345 274 0.29
346 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (341 bp):
ATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAAGG
TATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTCTCATTTTTTCAAGGTAGA
CATTCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAATTTAAATCAATTTTGAGA
ATATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTT
CTTACCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAA
CCAAAAATGTAAAAAA
Found at i:3189 original size:344 final size:343
Alignment explanation
Indices: 2102--3418 Score: 1438
Period size: 344 Copynumber: 3.8 Consensus size: 343
2092 GGGCGAGCAC
** * *
2102 TCAATTATAGCCTTTTTTAACCAAAAATATA-AAA-AATTC-AACTTAAAATCAATTTTGAGATT
1 TCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAACTT-AAATCAATTTTGAGAAT
* * ** *
2164 ATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGCAACTATAAATGGACTATTCT
65 ATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCT
** * * * * * *
2229 TGTTAATGAGTGCCTTCTTCTTCATGTTTC-CTAAGGTAAATATTCAATTATAATCTATTTTGAC
130 TGCCAATGAATGCCTTTTTCTTTATGTTTCTC-AAGGTAAACATTCAATTATAATCTGTTTTAAC
** * * * * * **
2293 CAAAAACATCAAAAAATTCAATCTAAAATCAATTATGAG-GTTATAAAACCATTTAAAGTGAGTA
194 CAAAAATGTAAAAAAATTCAATTTAAAATCAATTATG-GCATTACAAAACTATTTAAAGCAAGTA
* * *
2357 ATAAGGCTTTTGAAAG-AATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATTCTTTTTT-T
258 ATAAGGCTTTTGAAGGTAAGGA-TGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTCT
* * *
2420 CTCAGTTTTCTCGAGGTGGACAT
322 -TCATTTTTCTCAAGGTAGACAT
* * * * * *
2443 TCTATTATAATCTCTTTTAACAAAAAATATACAAATAATTCAAATTTAAATCAATTTGGAGAATA
1 TCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAACTTAAATCAATTTTGAGAATA
* * * * *
2508 TAAAGCCATTTAAAGTAAGTAATAAGGCTTTTGAAGGAATAGGTGACTATCAATGTACTTTTTTT
66 TAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT
* * * * * * *
2573 ACCATTTG-ATGCCTTTTTCTTTATGGTTCTCAAGGTAGACATTTAATTATAGTTTGTTTTAACC
131 GCCA-ATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACC
* * *
2637 TAAAATGTAAAAAAAATTCAACCTTAAAATCAATTATGGCATTACAAAACTATTAAAAGCAAGTA
195 AAAAATGT-AAAAAAATTCAA-TTTAAAATCAATTATGGCATTACAAAACTATTTAAAGCAAGTA
* * * *
2702 ATAAGGCTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATTCCTTTTTCGT
258 ATAAGGCTTTTGAAGGTAAGGATGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTCTT
2767 CATATTTT-TCAAGGTAGACAT
323 CAT-TTTTCTCAAGGTAGACAT
* * * *
2788 TCAATTATAATATGTTTTAACCAAAAATATACAGAGAATTCAAATTTAAATCAATTTTGAGAATA
1 TCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAACTTAAATCAATTTTGAGAATA
* * * *
2853 TAAAACTATTTAAAGTGAGTAATAAGGCTTTTAAAGTAATGGGTGACTATAAATGGACTTTTCTT
66 TAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT
* * ** * * *
2918 GCCAACGAATGCCTTTTTCTTTACGTTTCTTGAGGTAGACATTGAATTATAGTCTGTTTTAACCA
131 GCCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * *
2983 AAAACT-TAAAAAAATTCAATTGTAAAATGAGTTATGGCATTACAAAAGTGTTTAAAGCAAGTAA
196 AAAA-TGTAAAAAAATTCAATT-TAAAATCAATTATGGCATTACAAAACTATTTAAAGCAAGTAA
* * * * * *
3047 TAAGGCTTTTGAAGGTACGGAAGACTATAAATGGAGTTTTCTTACAAATGAATACTTTTTTCTTC
259 TAAGGCTTTTGAAGGTAAGGATGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTCTTC
* *
3112 ATTTTTCTCAAGGCAAACAT
324 ATTTTTCTCAAGGTAGACAT
* * * * * * *
3132 TAAATTCTAGTCTATTTTAACCAAAAATGTACAAAGAATTTAAACATAAATCAATTTTGAGATTA
1 TCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAACTTAAATCAATTTTGAGAATA
* * *
3197 TAAATCCATTTAAAGTGAGTAATAAAGCTTTTGAA-GATATGGGTGACTATAAATGGGCTTTTCT
66 TAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGA-ATGGGTGACTATAAATGGACTTTTCT
* * * *
3261 TGCCAATGAATTCC-TTTTCTTTATATTTCTCAAGGTAAACCTTCAATTATAATCCGTTTTAACC
130 TGCCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACC
* * * * **
3325 AAAAATGTACAAAGAATTCAATTT-AAATCAATTTTGAG-AATATAAAACTATTTAAAGTGAGTA
195 AAAAATGTA-AAAAAATTCAATTTAAAATCAATTATG-GCATTACAAAACTATTTAAAGCAAGTA
* * * *
3388 ATAAGACTTTGGAAGGTATGGGTGACTATAA
258 ATAAGGCTTTTGAAGGTAAGGATGACTATAA
3419 NNNNNNNNNN
Statistics
Matches: 816, Mismatches: 141, Indels: 37
0.82 0.14 0.04
Matches are distributed among these distances:
341 26 0.03
342 58 0.07
343 181 0.22
344 272 0.33
345 272 0.33
346 7 0.01
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (343 bp):
TCAATTATAATCTATTTTAACCAAAAATATACAAAGAATTCAAACTTAAATCAATTTTGAGAATA
TAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT
GCCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
AAAATGTAAAAAAATTCAATTTAAAATCAATTATGGCATTACAAAACTATTTAAAGCAAGTAATA
AGGCTTTTGAAGGTAAGGATGACTATAAATGGACTTTTCTTGCCAATGAATTCTTTTTTCTTCAT
TTTTCTCAAGGTAGACAT
Done.