Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403111.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_778.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79211

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1539--1958
171
2.5
169
75
5
418
34
15
10
36
1.83
8339--8769
170
2.5
167
77
8
422
35
15
10
38
1.81
17221--18111
171
5.2
170
75
5
672
36
13
10
37
1.78
24472--25824
171
7.9
170
79
6
1118
37
10
13
38
1.79
24504--25823
341
3.9
333
80
6
1147
38
10
13
38
1.79
24532--25823
512
2.5
513
79
7
1286
38
10
13
37
1.79
27586--28670
171
6.4
170
70
4
528
36
10
13
34
1.80
27612--28619
511
2.0
500
80
1
1052
35
11
14
35
1.81
32090--32129
21
2.0
19
85
9
53
27
7
17
47
1.74
31635--32419
342
2.3
341
81
6
892
38
9
14
37
1.79
31612--32421
170
4.7
170
75
9
662
38
9
14
37
1.79
35617--35934
173
1.9
163
85
4
361
35
10
14
36
1.80
50756--50794
20
1.9
21
84
5
53
48
7
10
33
1.66
53130--53598
172
2.8
162
76
9
404
36
12
10
36
1.77
52820--53598
342
2.3
331
77
6
711
34
12
11
35
1.79
67218--67651
170
2.6
170
77
1
460
35
14
11
34
1.82
72406--72945
171
3.2
169
75
3
490
36
13
10
35
1.80
73710--74179
170
2.8
170
81
2
503
37
12
13
34
1.82
74698--76401
170
10.0
170
79
6
1664
38
11
14
35
1.82
74698--76401
341
5.0
338
82
5
1812
38
11
14
35
1.82
74698--76401
511
3.3
507
81
5
1844
38
11
14
35
1.82
77318--77831
171
3.0
169
79
8
467
39
10
13
36
1.78

Tables:   1

The End!