Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403113.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_78.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8344
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.21

Warning! 3684 characters in sequence are not A, C, G, or T


Found at i:2855 original size:172 final size:171

Alignment explanation


    Indices: 2479--3005  Score: 538
    Period size: 171  Copynumber: 3.1  Consensus size: 171

       2469 NNNNNNNNNN

                *               *   *           *          *                 
       2479 GGTGACTATAAAT-GAACTTTTCTAGTCAATGAATGACTTTTTCTTCTTGTTTCCCAAGATAGAC
          1 GGTGGCTATAAATAG-ACTTATCTTGTCAATGAATGGCTTTTTCTTCATGTTTCCCAAGATAGAC

                        *                           **          *            
       2543 ATTCAATTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACCTAAAATGAATTATGAGATT
         65 ATTCAATTATAACCTGTTTTAACCAAAAATATAAAAAAATAAAACCTAAAATCAATTATGAGATT

             *    *          *                       *
       2608 ATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATT
        130 ACAAAAACATTTAAAGCAAGTAATAAAGCTTTTGAAGGAATG

                         *           *                   *      ***          
       2650 GGTGGCTATAAATGGACTTATCTTGCCAATGAATGGCTTTTTCTTAATGTTTTTTAAGATAGACA
          1 GGTGGCTATAAATAGACTTATCTTGTCAATGAATGGCTTTTTCTTCATGTTTCCCAAGATAGACA

              *       *                  *               *    *              
       2715 TTTAATTATAGCCTGTTTTAACCAAAAATGTCAAAAAAATAAAACTTAAACTCAATTATGAGATT
         66 TTCAATTATAACCTGTTTTAACCAAAAATAT-AAAAAAATAAAACCTAAAATCAATTATGAGATT

                   *                             *      
       2780 ACAAAAATATTTAAAGCAAGTAA-AAAGGCTTTTCG-TGGAATG
        130 ACAAAAACATTTAAAGCAAGTAATAAA-GCTTTT-GAAGGAATG

                               * *  *           *                     **     
       2822 GGTGGCTATAAATAGACTTTTTTTTTCAATGAATGGTTTTTTCTTCATGTTTCCCAAGGCAGACA
          1 GGTGGCTATAAATAGACTTATCTTGTCAATGAATGGCTTTTTCTTCATGTTTCCCAAGATAGACA

            *          ** *    * *       *         **   *      *             
       2887 ATCAATTATAATTTATTTTTATCAAAAATGTAAAAAAATTCAACATAAAATTAATTATGAGATTA
         66 TTCAATTATAACCTGTTTTAACCAAAAATATAAAAAAATAAAACCTAAAATCAATTATGAGATTA

            *    *      *            *     **    *   
       2952 TAAAACCATTTAGAGCAAGTAATAACGCTTTCAAAGGCATG
        131 CAAAAACATTTAAAGCAAGTAATAAAGCTTTTGAAGGAATG

                *        
       2993 GGTGACTATAAAT
          1 GGTGGCTATAAAT

       3006 GAGCTTTTCT


Statistics
Matches: 290,  Mismatches: 60, Indels: 12
        0.80            0.17        0.03

Matches are distributed among these distances:
 171  152  0.52
 172  137  0.47
 173    1  0.00

ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Consensus pattern (171 bp):   
GGTGGCTATAAATAGACTTATCTTGTCAATGAATGGCTTTTTCTTCATGTTTCCCAAGATAGACA
TTCAATTATAACCTGTTTTAACCAAAAATATAAAAAAATAAAACCTAAAATCAATTATGAGATTA
CAAAAACATTTAAAGCAAGTAATAAAGCTTTTGAAGGAATG
Done.