Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403114.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_780.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4384
ACGTcount: A:0.18, C:0.06, G:0.07, T:0.18

Warning! 2261 characters in sequence are not A, C, G, or T


Found at i:2361 original size:18 final size:19

Alignment explanation


    Indices: 2338--2375  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       2328 GCACAAAAAA

                               
       2338 TTGAACTTA-AAATCAATT
          1 TTGAACTTATAAATCAATT

                           *   
       2356 TTGAACTTATAAATCTATT
          1 TTGAACTTATAAATCAATT

             
       2375 T
          1 T

       2376 AAAGTGATTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    9  0.50
  19    9  0.50

ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45


Consensus pattern (19 bp):   
TTGAACTTATAAATCAATT

Done.