Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403116.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_785.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4541
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.26

Warning! 1555 characters in sequence are not A, C, G, or T


Found at i:1540 original size:171 final size:171

Alignment explanation


    Indices: 1246--1579  Score: 404
    Period size: 171  Copynumber: 2.0  Consensus size: 171

       1236 NNNNNNNNTG

                                 *                                           
       1246 ATTTTAAGTTGAAATTTTTTATATTTTTCATTAAAACAGACTATAATTGAACCTCTACCTTAACA
          1 ATTTTAAGTTGAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACCTCTACCTTAACA

              *  *                    *                  *    *        *  *  
       1311 AATGTGAAGAAAAAAGAATTCATTGATAAGAAAATTTCATTTATAGCCTCCCATTCCTTTAATAG
         66 AAAGTAAAGAAAAAAGAATTCATTGACAAGAAAATTTCATTTATAACCTCACATTCCTTCAAAAG

                    *                                  
       1376 CCTTT-TTTCTAG-TTCTAAATGGTTTCATAATCTCAAAATTA
        131 -CTTTATTACTAGCTT-TAAATGGTTTCATAATCTCAAAATTA

                      ** *                                  *  **   * *  * * 
       1417 ATTTTAAGTTTCATTTTTTTACATTTTTCATTAAAACAGACTATAATTTAATGTCTGCTTTGAGA
          1 ATTTTAAGTTGAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACCTCTACCTTAACA

                            *        *                          *            
       1482 AAAGTAAAGAAAAAAGCATTCATTGGCAAGAAAAGTTT-ATTTATAACCTCATATTCCTTCAAAA
         66 AAAGTAAAGAAAAAAGAATTCATTGACAAGAAAA-TTTCATTTATAACCTCACATTCCTTCAAAA

                       *              *       
       1546 GCTTTATTACTTGCTTTAAATGGTTTTATAATCT
        130 GCTTTATTACTAGCTTTAAATGGTTTCATAATCT

       1580 AATAATTGNN


Statistics
Matches: 136,  Mismatches: 24, Indels: 6
        0.82            0.14        0.04

Matches are distributed among these distances:
 170    4  0.03
 171  127  0.93
 172    5  0.04

ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41


Consensus pattern (171 bp):   
ATTTTAAGTTGAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACCTCTACCTTAACA
AAAGTAAAGAAAAAAGAATTCATTGACAAGAAAATTTCATTTATAACCTCACATTCCTTCAAAAG
CTTTATTACTAGCTTTAAATGGTTTCATAATCTCAAAATTA
Done.