Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403119.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_788.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3059
ACGTcount: A:0.20, C:0.08, G:0.07, T:0.21

Warning! 1329 characters in sequence are not A, C, G, or T


Found at i:2276 original size:171 final size:159

Alignment explanation


    Indices: 2094--2416  Score: 319
    Period size: 171  Copynumber: 2.0  Consensus size: 159

       2084 CAAGTCTTCG

                *          *      *  *      *                         *      
       2094 AAAGGCTTATTACTCGCTTTAATTAGTTTTATTATATCATAATTGATTTTA-AGTTTATTTTTTT
          1 AAAGCCTTATTACTCACTTTAAATAATTTTATAATATCATAATTGATTTTAGA-TTTAATTTTTT

             *                                                ** *           
       2158 TCCATTTTTAGGCTAA-ACAAACTATAATTGAATGTCTACC-TAGAGAAATGTGAAGAAAAAGGC
         65 TACATTTTT---CTAAGACAAACTATAATTGAATGTCTACCTTA-AGAAACATAAAGAAAAAGGC

               *             *                          
       2221 ATTTATTGGCAAGAAAAGTCCATTTATAGTNNNNNNNNNNTTCA
        126 ATTCATTGGCAAGAAAACTCCATTTATAGT----------TTCA

                                               *                             
       2265 AAAGCCTTATTACTCACTTTAAATAATTTTATAATTTCATAATTGATTTTAGATTTAATTTTTTT
          1 AAAGCCTTATTACTCACTTTAAATAATTTTATAATATCATAATTGATTTTAGATTTAATTTTTTT

                    *       * * *         *                     *            
       2330 ACATTTTTTTAAGACAGATTTTAATTGAATTTCTACCTTAAGAAACATAAAGGAAAAGGCATTCA
         66 ACATTTTTCTAAGACAAACTATAATTGAATGTCTACCTTAAGAAACATAAAGAAAAAGGCATTCA

                                  
       2395 TTGGCAAGAAAACTCCATTTAT
        131 TTGGCAAGAAAACTCCATTTAT

       2417 NNNNNNNNNN


Statistics
Matches: 130,  Mismatches: 19, Indels: 8
        0.83            0.12        0.05

Matches are distributed among these distances:
 168    3  0.02
 169   61  0.47
 170    2  0.02
 171   63  0.48
 172    1  0.01

ACGTcount: A:0.35, C:0.11, G:0.11, T:0.40


Consensus pattern (159 bp):   
AAAGCCTTATTACTCACTTTAAATAATTTTATAATATCATAATTGATTTTAGATTTAATTTTTTT
ACATTTTTCTAAGACAAACTATAATTGAATGTCTACCTTAAGAAACATAAAGAAAAAGGCATTCA
TTGGCAAGAAAACTCCATTTATAGTTTCA
Done.