Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403121.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_79.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3723
ACGTcount: A:0.15, C:0.06, G:0.05, T:0.16

Warning! 2163 characters in sequence are not A, C, G, or T


Found at i:3348 original size:174 final size:171

Alignment explanation


    Indices: 3060--3442  Score: 464
    Period size: 174  Copynumber: 2.2  Consensus size: 171

       3050 NNNNNNNNNN

                                            *     *          *      *       *
       3060 TTTAAATAGTTTTATAATCTCATAATTGATTTCAAGTTGAATTTTTTTGTATTATTTGATAAAAT
          1 TTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTCAATTTTTTTGCATTATTGGATAAAAC

                                   **                                     *  
       3125 AGACTATAATTGAATGTCTACCTTGAGAAACATTGAGAGACAAGCATTCATTGGCAAGAAAACTT
         66 AGACTATAATTGAATGTCTACCTCAAGAAACATTGAGAGACAAGCATTCATTGGCAAGAAAAATT

                       *  *                    *     
       3190 AATTTATAGTCTCATATTCCCTCAAAAGCCTTATTTCTCGC
        131 AATTTATAGTCACACATTCCCTCAAAAGCCTTATTACTCGC

                   *     *        *           *                          *   
       3231 TTTAAATGGTTTTGTAATCTCAAAATTGATTTTAGGTTCAATTTTTTTTTTGCATTATTGGTTAA
          1 TTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTCAA---TTTTTTTGCATTATTGGATAA

                  *                *                                   *     
       3296 AACAGATTATAATTGAATGTCTAGCTCAAGAAACA-TGAAGAGA-AAGGCATTCATTGGTAAGAA
         63 AACAGACTATAATTGAATGTCTACCTCAAGAAACATTG-AGAGACAA-GCATTCATTGGCAAGAA

                 *            *     ** *     *            
       3359 AAATTCATTTATAGTCACCCATTCTTTTAAAAGTCTTATTACTCGC
        126 AAATTAATTTATAGTCACACATTCCCTCAAAAGCCTTATTACTCGC

                      *     *                     
       3405 TTTAAATAGTCTTATAGTCTCATAATTGATTTTAAGTT
          1 TTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTT

       3443 GAATNNNNNN


Statistics
Matches: 176,  Mismatches: 31, Indels: 7
        0.82            0.14        0.03

Matches are distributed among these distances:
 171   35  0.20
 173    4  0.02
 174  137  0.78

ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40


Consensus pattern (171 bp):   
TTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTCAATTTTTTTGCATTATTGGATAAAAC
AGACTATAATTGAATGTCTACCTCAAGAAACATTGAGAGACAAGCATTCATTGGCAAGAAAAATT
AATTTATAGTCACACATTCCCTCAAAAGCCTTATTACTCGC
Done.