genome.fa.s5872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403125.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_793.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34305

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366--404	20	1.9	21	89	5	62	28	17	12	41	1.87
2--1229	171	7.3	171	71	7	703	35	11	15	34	1.84
1737--2408	342	2.0	332	81	3	779	33	11	15	34	1.84
3019--3433	172	2.4	171	81	3	444	37	11	14	36	1.83
3181--3889	339	2.1	341	75	3	705	38	11	11	35	1.78
4148--4187	21	1.9	21	89	0	62	30	15	12	42	1.83
4010--5324	171	7.7	168	77	6	1109	37	12	14	35	1.84
5261--5389	65	2.0	65	86	4	181	45	9	10	34	1.70
5392--6932	170	9.0	169	77	4	1308	37	12	13	34	1.83
4744--5909	585	2.0	580	80	6	1329	38	13	13	34	1.84
6581--6896	169	1.9	160	77	10	323	35	13	13	34	1.84
7344--7745	162	2.4	163	79	8	420	37	13	13	35	1.84
8890--9358	169	2.8	171	80	4	509	34	13	13	36	1.84
9464--9865	170	2.4	168	79	9	436	34	12	11	41	1.79
8639--9939	586	2.2	584	78	5	1280	34	12	13	37	1.82
10448--10575	65	2.0	65	88	0	193	30	8	13	47	1.72
10515--11539	171	6.0	170	79	5	1050	34	13	13	38	1.84
11542--11672	65	2.0	65	83	5	167	33	7	11	47	1.68
10796--12467	927	1.8	928	80	5	2016	35	12	13	38	1.82
11607--12890	171	7.5	171	77	6	1043	35	13	12	39	1.82
14445--15924	170	8.7	167	74	6	996	35	13	11	37	1.81
14445--15932	339	4.4	336	76	6	1173	35	13	11	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17938--18062	65	1.9	65	88	3	189	29	9	11	49	1.70
18104--18558	171	2.7	167	75	6	416	34	12	11	36	1.80
20523--20655	65	2.0	65	84	2	169	30	11	12	45	1.76
21588--21984	170	2.3	169	82	5	453	34	12	13	39	1.83
22246--23488	171	7.3	170	73	7	739	38	10	12	35	1.79
22246--23488	170	7.3	170	72	7	730	38	10	12	35	1.79
24853--25279	172	2.5	171	81	4	457	36	12	16	33	1.87
25351--25905	170	3.2	168	75	6	413	39	11	12	35	1.79
25842--25969	64	2.0	64	84	3	168	46	10	10	32	1.74
26017--26491	171	2.8	171	79	6	444	38	12	10	35	1.79
26427--26556	65	2.0	65	86	0	179	46	10	12	30	1.76
25572--26759	587	2.0	581	81	6	1376	38	12	12	33	1.81
25572--26907	587	2.3	580	79	7	1362	38	12	12	33	1.80
26613--27743	170	6.6	170	70	11	679	36	11	13	35	1.81
28307--30436	171	12.5	170	74	5	1201	36	11	14	34	1.82
28653--30233	341	4.6	332	74	10	854	36	11	14	34	1.82
30517--34305	171	22.0	169	68	11	792	36	11	12	34	1.80
31306--31344	21	1.9	20	84	5	51	25	12	20	41	1.88
31956--34305	170	13.8	167	71	10	1175	36	11	13	34	1.81

Tables:   1

The End!