Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403137.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_803.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1940
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.15

Warning! 1165 characters in sequence are not A, C, G, or T


Found at i:188 original size:16 final size:16

Alignment explanation


    Indices: 158--199  Score: 68
    Period size: 16  Copynumber: 2.7  Consensus size: 16

        148 NNNNNAAATA

                            
        158 TAAAA-CAATTCAACT
          1 TAAAATCAATTCAACT

                       *    
        173 TAAAATCAATTGAACT
          1 TAAAATCAATTCAACT

                       
        189 TAAAATCAATT
          1 TAAAATCAATT

        200 ATGAGATTAT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15    5  0.20
  16   20  0.80

ACGTcount: A:0.52, C:0.14, G:0.02, T:0.31


Consensus pattern (16 bp):   
TAAAATCAATTCAACT
Done.