Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018403140.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_807.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4110
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.21
Warning! 1708 characters in sequence are not A, C, G, or T
Found at i:1647 original size:170 final size:160
Alignment explanation
Indices: 1444--1750 Score: 362
Period size: 170 Copynumber: 1.9 Consensus size: 160
1434 TTTAAAGAAA
* * * *
1444 TGGGTGAATAAAAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGA
1 TGGGTGAATAAAAATAGACTGTTCTTACCAATGAATGCCTTTTTCTTCATGGTTCTCAAGGTAGA
* * * * * *
1509 TATTCAATTATAATATGTTTTAATCAATATTATAAAAAAATTAAACCTAAAATCAATTATGAGAT
66 CATTCAATTATAATATCTTTTAACCAAAAATATAAAAAAAGTAAACCTAAAATCAATTATGAGAT
1574 TATAAAACCATTAAAGCGAGTAATAAGGCT
131 TATAAAACCATTAAAGCGAGTAATAAGGCT
* * *
1604 TNNNNNNNNNNGGGTGAGTATAAATAGACTGTTCTTGCCAATGAATGCCTTTTTCTTCATGGTTC
1 T----------GGGTGAATAAAAATAGACTGTTCTTACCAATGAATGCCTTTTTCTTCATGGTTC
* * * * *
1669 TCAAGGTAGACATTCAATTATAGTCTCTTTTAACCAAAAATATACAAAAAGTCAACTTAAAATCA
56 TCAAGGTAGACATTCAATTATAATATCTTTTAACCAAAAATATAAAAAAAGTAAACCTAAAATCA
1734 ATTATGAGATTATAAAA
121 ATTATGAGATTATAAAA
1751 NNNNNNNNNN
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
160 1 0.01
170 118 0.99
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.34
Consensus pattern (160 bp):
TGGGTGAATAAAAATAGACTGTTCTTACCAATGAATGCCTTTTTCTTCATGGTTCTCAAGGTAGA
CATTCAATTATAATATCTTTTAACCAAAAATATAAAAAAAGTAAACCTAAAATCAATTATGAGAT
TATAAAACCATTAAAGCGAGTAATAAGGCT
Done.