Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403153.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_820.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2015
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.31

Warning! 257 characters in sequence are not A, C, G, or T


Found at i:1723 original size:170 final size:167

Alignment explanation


    Indices: 1528--2014  Score: 491
    Period size: 170  Copynumber: 2.9  Consensus size: 167

       1518 AAATTAAATT

                              *           *                      *   *  *    
       1528 TTTTTATATTAAAATATTATATAATTGAATATATATCTTTGAAAACGTGCAATTAAAGCCCCTCA
          1 TTTTT-TATTAAAATATTTTATAATTGAATGTATATCTTTG-AAACGTG-AA-CAAAACCACTCA

                                            *      *     *        *          
       1593 TTGGAGAGAAAAGTCCATTTATAGTCACCCACTG-CTTTAAAAGCATTATTACTTGCTTTAAATG
         62 TTGGA-AGAAAAGTCCATTTATAGTCACCCA-AGCCTTTGAAAGCCTTATTACTAGCTTTAAATG

                         *       * *     *           * 
       1657 GTTTTATAATCTCGTAATTCATTTTAAGTTGAATT-TTTTATA
        125 GTTTTATAATCTCATAATTCACTCTAAGTAGAATTGTTTTACA

                                     *     * *           *                   
       1699 TTTTTTATTAAAATATTTTATAATTAAATGTTTGTCTTCTGAAACATGAAGCAAAACCACTCATT
          1 TTTTTTATTAAAATATTTTATAATTGAATGTATATCTT-TGAAACGTGAA-CAAAACCACTCATT

              *                        *        *                            
       1764 GATAAGAAAAGTCCA-TTAGTAGTCACTCAAGCCTTCGAAAGCCTTATTACTAGCTTTAAATGAG
         64 G-GAAGAAAAGTCCATTTA-TAGTCACCCAAGCCTTTGAAAGCCTTATTACTAGCTTTAAATG-G

                              *                       
       1828 -TTTATAATCTCATAATTGACTCTAAGTAGAATTGTTTTACA
        126 TTTTATAATCTCATAATTCACTCTAAGTAGAATTGTTTTACA

                            **              *      **   *      *        *    
       1869 -TTTTTAGTTAAAATAGATTATAATTGAATGTCTATCATGGGAACCGTGAAGAAAACCTATTCAT
          1 TTTTTTA-TTAAAATATTTTATAATTGAATGTATATC-TTTGAAACGTGAACAAAACC-ACTCAT

               *                    *                                        
       1933 TAGCAAGAAAAGTCCATTTATAGTAACCCAAGCCTTTGAAAGCCTTATTACTCA-CTTTAAATGG
         63 T-GGAAGAAAAGTCCATTTATAGTCACCCAAGCCTTTGAAAGCCTTATTACT-AGCTTTAAATGG

                     *        
       1997 TTTTATAATTTCATAATT
        126 TTTTATAATCTCATAATT

       2015 G


Statistics
Matches: 264,  Mismatches: 39, Indels: 27
        0.80            0.12        0.08

Matches are distributed among these distances:
 168    4  0.02
 169  101  0.38
 170  146  0.55
 171   13  0.05

ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39


Consensus pattern (167 bp):   
TTTTTTATTAAAATATTTTATAATTGAATGTATATCTTTGAAACGTGAACAAAACCACTCATTGG
AAGAAAAGTCCATTTATAGTCACCCAAGCCTTTGAAAGCCTTATTACTAGCTTTAAATGGTTTTA
TAATCTCATAATTCACTCTAAGTAGAATTGTTTTACA

Done.