Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403154.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_821.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 859

Length: 1432
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.34

Warning! 75 characters in sequence are not A, C, G, or T


Found at i:400 original size:170 final size:161

Alignment explanation


    Indices: 224--545  Score: 321
    Period size: 170  Copynumber: 1.9  Consensus size: 161

        214 TTGAGATTAC

                                    *            *                 *         
        224 AAAACCATTTAAAGT-TAGTAATACGGCTTTTCG-AGGAATGGGCAACTATAAATGGAATTTTCT
          1 AAAACCATTTAAAGTGT-GTAATAAGGCTTTT-GAAGCAATGGGCAACTATAAATAGAATTTTCT

                       *      *               **    *          *             
        287 TACCAATG-A-CCCTTTTTCTTCATGTTTCTGGAGGTTGATATTCAATTATGATCTGTTTTATA-
         64 TACCAATGAATACCTTTTCCTTCATGTTTCTGGACCTTGACATTCAATTATAATCT-TTTTA-AC

                *                                        
        349 GAAAGATGTACAAAGAATTCAAATTTAAATCNNNNNNNNNNTTAT
        127 GAAAAATGTACAAAGAATTCAAATTTAAATC----------TTAT

                                                   *  **     *      *       *
        394 AAAACCATTTAAAGTGTGTAATAAGGCTTTTGAAGCAATTGGTGACTATTAATAGACTTTTCTTG
          1 AAAACCATTTAAAGTGTGTAATAAGGCTTTTGAAGCAATGGGCAACTATAAATAGAATTTTCTTA

                                         *                                   
        459 CCAATGAATACCTTTTCCTTCATGTTTCTTGACCTTGACATTCAATTATAATCTTTTTAACGAAA
         66 CCAATGAATACCTTTTCCTTCATGTTTCTGGACCTTGACATTCAATTATAATCTTTTTAACGAAA

                           *      
        524 AATGTACAAAGAATTTAAATTT
        131 AATGTACAAAGAATTCAAATTT

        546 CAANNNNNNN


Statistics
Matches: 129,  Mismatches: 18, Indels: 9
        0.83            0.12        0.06

Matches are distributed among these distances:
 169    1  0.01
 170   59  0.46
 171   31  0.24
 172   38  0.29

ACGTcount: A:0.33, C:0.13, G:0.14, T:0.37


Consensus pattern (161 bp):   
AAAACCATTTAAAGTGTGTAATAAGGCTTTTGAAGCAATGGGCAACTATAAATAGAATTTTCTTA
CCAATGAATACCTTTTCCTTCATGTTTCTGGACCTTGACATTCAATTATAATCTTTTTAACGAAA
AATGTACAAAGAATTCAAATTTAAATCTTAT
Done.