Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403155.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_822.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2380
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.18

Warning! 1124 characters in sequence are not A, C, G, or T


Found at i:1632 original size:172 final size:171

Alignment explanation


    Indices: 1417--1730  Score: 461
    Period size: 172  Copynumber: 1.8  Consensus size: 171

       1407 TATGAGATTA

                                                                 *           
       1417 TAAAACCATTCAAAGCGAGTAATATAGCTTTTAAAGGAATGACAGACTATAAATGGACTTTTCTT
          1 TAAAACCATTCAAAGCGAGTAATATAGCTTTTAAAGGAATGACAGACTATAAACGGACTTTTCTT

            *                      *        *       * * *                *   
       1482 GCCAATGAAAGCTTCTTTCTTGATG-TTTCTCGAGGTAGACATTTAATTATAATCTAATTTGACG
         66 ACCAATGAAAGCTT-TTTCTTGAAGTTTTC-CAAGGTAGAAACTGAATTATAATCTAATTTAACG

                                                       
       1546 AAAAATGTACAAAGAATTCAAATAAAAATTAATTTCGAGATCC
        129 AAAAATGTACAAAGAATTCAAATAAAAATTAATTTCGAGATCC

                      *    *                                                 
       1589 TAAAACCATTTAAAGTGAGTAATA-ATGCTTTTAAAGGAATGACAGACTATAAACGGACTTTTCT
          1 TAAAACCATTCAAAGCGAGTAATATA-GCTTTTAAAGGAATGACAGACTATAAACGGACTTTTCT

                      *          *           *                             * 
       1653 TACCAATGAATGCTTTTTCTTTAAGTTTTCCAATGTAGAAACTGAATTATAATCTAATTTAACTA
         65 TACCAATGAAAGCTTTTTCTTGAAGTTTTCCAAGGTAGAAACTGAATTATAATCTAATTTAACGA

                         
       1718 AAAATGTACAAAG
        130 AAAATGTACAAAG

       1731 NNNNNNNNNN


Statistics
Matches: 126,  Mismatches: 14, Indels: 5
        0.87            0.10        0.03

Matches are distributed among these distances:
 171   50  0.40
 172   76  0.60

ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33


Consensus pattern (171 bp):   
TAAAACCATTCAAAGCGAGTAATATAGCTTTTAAAGGAATGACAGACTATAAACGGACTTTTCTT
ACCAATGAAAGCTTTTTCTTGAAGTTTTCCAAGGTAGAAACTGAATTATAATCTAATTTAACGAA
AAATGTACAAAGAATTCAAATAAAAATTAATTTCGAGATCC
Done.