Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403169.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_836.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.28

Warning! 314 characters in sequence are not A, C, G, or T


Found at i:982 original size:172 final size:171

Alignment explanation


    Indices: 562--1162  Score: 588
    Period size: 172  Copynumber: 3.5  Consensus size: 171

        552 NNNNNNNNNN

                                         *                     *   *         
        562 CTTTAAATGGTTTTATAAACT-AATAATTTATTTTAAGTTAAATTTTTTTATATTGTTGATTAAA
          1 CTTTAAATGGTTTTATAAACTCAA-AATTGATTTTAAGTTAAATTTTTTTAAATTTTTGATTAAA

                 *  *                          *                             
        626 ACAAAATAGAATTGAATGTCTACCTTGAGAAACATGAAGAAAAAAGCATTCATTGGCAAA-AAAA
         65 ACAAATTATAATTGAATGTCTACCTTGAGAAACATAAAGAAAAAAGCATTCATTGG-AAAGAAAA

                                 * *              *      *
        690 GTCCCA-TTATAGTCACTCATACGTTCAAAAAGCCTTACTACAT-T
        129 GT-CCATTTATAGTCACTCATTCCTT-AAAAAGCCTTATTAC-TCA

                               *    *               *     *    *         * * 
        734 CTTTAAATGGTTTTATAATGC-CATAATTGATTTTAAGTTGAATTTGTTTACATTTTT-AGCTGA
          1 CTTTAAATGGTTTTATAA-ACTCAAAATTGATTTTAAGTTAAATTTTTTTAAATTTTTGA-TTAA

              * * *                                             *          * 
        797 AATAGACTATAATTGAATGTCTACCTTGAGAAACATAAAGAAAAAAGCATTCTTTGGAAAGAATA
         64 AACAAATTATAATTGAATGTCTACCTTGAGAAACATAAAGAAAAAAGCATTCATTGGAAAGAAAA

                                     * **   *     *    
        862 GTCCATTTATAGTCACTCATTCCTTTAGTAGCGTTATTGCTCA
        129 GTCCATTTATAGTCACTCATTCCTTAAAAAGCCTTATTACTCA

                              *        *    *                                
        905 CTTTAAATGGTTTTATAACCTCAAAATCGATTCTAAGTTCAAATTTTTTTAAATTTTTGATTAAA
          1 CTTTAAATGGTTTTATAAACTCAAAATTGATTTTAAGTT-AAATTTTTTTAAATTTTTGATTAAA

                               *     *      *          **                   *
        970 ACAAATTATAATTGAATGTGTACCTCGAGAAATATAAAGAAAAGGGCATTCATTGGAAAGAAAAC
         65 ACAAATTATAATTGAATGTCTACCTTGAGAAACATAAAGAAAAAAGCATTCATTGGAAAGAAAAG

              *    **            *   *                 
       1035 TCTATTTGCAGTCAC-CTATTGCTTCAAAAGCCTTATTACTCA
        130 TCCATTTATAGTCACTC-ATTCCTTAAAAAGCCTTATTACTCA

             *       **       *     *                    * *     *           
       1077 CATTAAATGCCTTTATAATCTCAAGATTGATTTTAAGTTGAAATTGTGTTACATTTTTTG-TTAA
          1 CTTTAAATGGTTTTATAAACTCAAAATTGATTTTAAGTT-AAATTTTTTTA-AATTTTTGATTAA

                *       *         
       1141 AACATATTATAACTGAATGTCT
         64 AACAAATTATAATTGAATGTCT

       1163 CGCT


Statistics
Matches: 350,  Mismatches: 68, Indels: 22
        0.80            0.15        0.05

Matches are distributed among these distances:
 170    2  0.01
 171   50  0.14
 172  288  0.82
 173   10  0.03

ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38


Consensus pattern (171 bp):   
CTTTAAATGGTTTTATAAACTCAAAATTGATTTTAAGTTAAATTTTTTTAAATTTTTGATTAAAA
CAAATTATAATTGAATGTCTACCTTGAGAAACATAAAGAAAAAAGCATTCATTGGAAAGAAAAGT
CCATTTATAGTCACTCATTCCTTAAAAAGCCTTATTACTCA
Done.