Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403170.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_837.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1362
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.34

Warning! 117 characters in sequence are not A, C, G, or T


Found at i:350 original size:171 final size:161

Alignment explanation


    Indices: 173--480  Score: 368
    Period size: 171  Copynumber: 1.9  Consensus size: 161

        163 NNNNNNNNNN

                                    *                                        
        173 TAAGTTGAATTTTTTTACATTTTTTGCTAAAACAGACTATAATTAAATGTCTACATTA-AGAAAC
          1 TAAGTTGAATTTTTTTACATTTTTAGCTAAAACAGACTATAATTAAATGTCTAC-TTAGAGAAAC

                                   *                         *       *       
        237 ATGAA-AAAAAAATTATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATTAATTTAAAAGCC
         65 ATGAAGAAAAAAA-TATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTAATTCAAAAGCC

                                                       
        301 TTATTACTCGCTTTAANNNNNNNNNNAATCTCATAATTAATTT
        129 TTATTACTCGCTTTAA----------AATCTCATAATTAATTT

                    *                    *              *   *               *
        344 TAAGTTGAGTTTTTTTACATTTTTAGCTACAACAGACTATAATTGAATTTCTACTTAGAGAAACG
          1 TAAGTTGAATTTTTTTACATTTTTAGCTAAAACAGACTATAATTAAATGTCTACTTAGAGAAACA

                            **  *                              **            
        409 TGAAGAAAAAAATATTGGTTTACAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTT
         66 TGAAGAAAAAAATATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTAATTCAAAAGCCTT

                   
        474 ATTACTC
        131 ATTACTC

        481 NNNNNNNNNN


Statistics
Matches: 121,  Mismatches: 14, Indels: 4
        0.87            0.10        0.03

Matches are distributed among these distances:
 170    3  0.02
 171  111  0.92
 172    7  0.06

ACGTcount: A:0.37, C:0.14, G:0.10, T:0.35


Consensus pattern (161 bp):   
TAAGTTGAATTTTTTTACATTTTTAGCTAAAACAGACTATAATTAAATGTCTACTTAGAGAAACA
TGAAGAAAAAAATATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTAATTCAAAAGCCTT
ATTACTCGCTTTAAAATCTCATAATTAATTT
Done.