Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403175.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_842.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1939
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.22

Warning! 795 characters in sequence are not A, C, G, or T


Found at i:1932 original size:172 final size:171

Alignment explanation


    Indices: 1603--1939  Score: 405
    Period size: 172  Copynumber: 2.0  Consensus size: 171

       1593 NNNNNNNNCC

                                 * *                                         
       1603 ATTCCTTCAAAAGGCTTATTATTTGCTTTAAACTGTTTTATAATCTAATAATTAATTTTAAGTCA
          1 ATTCCTTCAAAAGGCTTATTACTAGCTTTAAACTGTTTTATAATCTAATAATTAATTTTAAGTCA

                      *                  *          *           *            
       1668 ATTTTTATTATATTATTAGTCAAAACAGATTATAATTGAATGTATATCTCAAGAAACATCAAGAA
         66 ATTTTTATTACATTATTAGTCAAAACAGACTATAATTGAAGGTATATCTCAACAAACATCAAGAA

                 *     *      *                      
       1733 ACAAGGATTCATTAGCAAGAAAAGTCCATTTATAGTCTCTT
        131 ACAAGCATTCACTAGCAAAAAAAGTCCATTTATAGTCTCTT

                        *    *       *                     *      *      *   
       1774 ATTCCTTCAAAATGCTTTTTACTAGTTTTAAA-TGGTTTTATAATCTCATAATTGATTTTAGGTT
          1 ATTCCTTCAAAAGGCTTATTACTAGCTTTAAACT-GTTTTATAATCTAATAATTAATTTTAAG-T

                             *     *                      *                 *
       1838 CAATTTATT-TTACATTTTTAGTTAAAACAGACTATAATTGAAGGTCTA-C-CATGACAAACATG
         64 CAATTT-TTATTACATTATTAGTCAAAACAGACTATAATTGAAGGTATATCTCA--ACAAACATC

             *                                       
       1900 ACGAAA-AAGACATTCACTAGCAAAAAAAGTCCATTTATAG
        126 AAGAAACAAG-CATTCACTAGCAAAAAAAGTCCATTTATAG


Statistics
Matches: 140,  Mismatches: 20, Indels: 11
        0.82            0.12        0.06

Matches are distributed among these distances:
 170    3  0.02
 171   56  0.40
 172   79  0.56
 173    2  0.01

ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38


Consensus pattern (171 bp):   
ATTCCTTCAAAAGGCTTATTACTAGCTTTAAACTGTTTTATAATCTAATAATTAATTTTAAGTCA
ATTTTTATTACATTATTAGTCAAAACAGACTATAATTGAAGGTATATCTCAACAAACATCAAGAA
ACAAGCATTCACTAGCAAAAAAAGTCCATTTATAGTCTCTT
Done.