Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018403185.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_851.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3632
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.20
Warning! 1582 characters in sequence are not A, C, G, or T
Found at i:1353 original size:170 final size:170
Alignment explanation
Indices: 1011--1357 Score: 473
Period size: 170 Copynumber: 2.0 Consensus size: 170
1001 NNNNNNNNNN
* *
1011 AAGCGAGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATGAGCTTTTCTTGTCAATGAATTT
1 AAGCGAGTAATAAGGCTCTTAAAGGAATAGGAGACTATAAATGAGCTTTTCTTGTCAATGAATTT
* * *
1076 TTTTGCTGTACGTTTCTCAAGGTAGACATTCAGTTGTAGTCTAGTTTAATCAAAAATATTAAAAA
66 TTTTACTGTACCTTTCTCAAGGTAGACATTCAGTCGTAGTCTAGTTTAATCAAAAATATTAAAAA
**********
1141 ATCTAACTTAAAATCAATTATGAGATNNNNNNNNNNTTTA
131 ATCTAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * *
1181 AAGCGAGTAATAAGGCTCTTAAAGGAATGGGTGACTATAAATG-GACTTTTTTTGTCAATGAATG
1 AAGCGAGTAATAAGGCTCTTAAAGGAATAGGAGACTATAAATGAG-CTTTTCTTGTCAATGAAT-
* *
1245 TTTTTTACTGTACCTTTCTCAAGGTGGACATTCAGTCGTAGTCTAGTTTAATCAAAAAT-TTTAA
64 TTTTTTACTGTACCTTTCTCAAGGTAGACATTCAGTCGTAGTCTAGTTTAATCAAAAATATTAAA
*
1309 AAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTA
129 AAATCTAACTTAAAATCAATTATGAGATTATAAAACCATTTA
1351 AAGCGAG
1 AAGCGAG
1358 NNNNNNNNNN
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
169 1 0.01
170 98 0.64
171 55 0.36
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.35
Consensus pattern (170 bp):
AAGCGAGTAATAAGGCTCTTAAAGGAATAGGAGACTATAAATGAGCTTTTCTTGTCAATGAATTT
TTTTACTGTACCTTTCTCAAGGTAGACATTCAGTCGTAGTCTAGTTTAATCAAAAATATTAAAAA
ATCTAACTTAAAATCAATTATGAGATTATAAAACCATTTA
Done.