Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403195.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_864.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.25

Warning! 367 characters in sequence are not A, C, G, or T


Found at i:1058 original size:171 final size:161

Alignment explanation


    Indices: 762--1090  Score: 451
    Period size: 171  Copynumber: 2.0  Consensus size: 161

        752 ATTGATTTTG

                                                                  *          
        762 ATTTGAATTTTATTATATTTTTTATTAAAACAAATTATAATTAAATGTTTGCCCTCTAAAACGTG
          1 ATTTGAATTTTATTATATTTTTTATTAAAACAAATTATAATTAAATGTTTGCCCCCTAAAACGTG

                      *                                    *     *           
        827 AAGAAAAAAATACCCATTGATAAGAAAAGTCCATTTATAGTCACCCATACCTTTAAAAGCTTTAG
         66 AAGAAAAAAACACCCATTGATAAGAAAAGTCCATTTATAGTCACCCAAACCTTCAAAAGCTTTAG

                   *      *                
        892 TACTCGCTTTAAATGATTTTATAAGCTCATA
        131 TACTCGCCTTAAATAATTTTATAAGCTCATA

                                                                *       *    
        923 NNNNNNNNNNATTTGAATTTTATTATATTTTTTATTAAAACAAATTATAATTGAATGTTTTCCCC
          1 ----------ATTTGAATTTTATTATATTTTTTATTAAAACAAATTATAATTAAATGTTTGCCCC

                 *            *   *                 *             *          
        988 CTAAAGCGTGAAGAAAAAGACATCCATTGATAAGAAAAGTGCATTTATAGTCACTCAAACCTTCA
         56 CTAAAACGTGAAGAAAAAAACACCCATTGATAAGAAAAGTCCATTTATAGTCACCCAAACCTTCA

                                                  
       1053 AAAGCTTTAGTACTCGCCTTAAATAATTTTATAAGCTC
        121 AAAGCTTTAGTACTCGCCTTAAATAATTTTATAAGCTC


Statistics
Matches: 145,  Mismatches: 13, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
 171  145  1.00

ACGTcount: A:0.37, C:0.14, G:0.10, T:0.36


Consensus pattern (161 bp):   
ATTTGAATTTTATTATATTTTTTATTAAAACAAATTATAATTAAATGTTTGCCCCCTAAAACGTG
AAGAAAAAAACACCCATTGATAAGAAAAGTCCATTTATAGTCACCCAAACCTTCAAAAGCTTTAG
TACTCGCCTTAAATAATTTTATAAGCTCATA
Done.