Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018403199.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_868.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23151
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.24
Warning! 8353 characters in sequence are not A, C, G, or T
Found at i:686 original size:171 final size:169
Alignment explanation
Indices: 1--2130 Score: 1853
Period size: 171 Copynumber: 12.5 Consensus size: 169
* * * * * *
1 TTGAAGGAATGAGAGACTATAAATGGACTTTTCTTTCCAATGAATGGCTTTTTCTACATGTTT-T
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAAT-ACTTTTTCT-TATGTTTCT
** * * * *
65 CTGAGGTAGGTATTTAATTATAGTGTGTTTTAA-TAAAAAATGTAAAAAAATTTAACTTTAAATC
64 C-GAGGTAGACATTCAATTATAGTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATC
*
129 AATTATGAGATTATAAAACCATTTAAAGTGAGTAGTAAGGCTT
127 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * * *** *
172 TTGAAGGAATGGGTAACTATGAATGGACTTTTCTTGCCAATGAATGA-TTTTTAAACATGTTTTT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAAT-ACTTTTT-CTTATGTTTCT
* * * *
236 CGAGGCAGACATTCAATTATAGCCTGTTTTAA-TAAAAAATGTAAAAAAATTCTATTTAAAATCA
64 CGAGGTAGACATTCAATTATAGTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCA
* *
300 ATTTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
128 ATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * ** * * * * * * **
342 TCGAAGAAATAAGAGACTATAAATGGACTTTT-TTTCGAATAAATGAGTTTTTCTACACATTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAAT-ACTTTTTCT-TATGTTTCT
* * * * * * *
406 TGAGGCATACATTCAATTATAGTCTTTTTTAGA-GAAAAATATAAAAAAGTTCAACTTAAAATCA
64 CGAGGTAGACATTCAATTATAGTCTGTTTTA-ACTAAAAATGTAAAAAAATTCAACTTAAAATCA
* * * *
470 ATTTTGAGATTATTAAACTATTTAAAGCGAGTAATAAGGCTT
128 ATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * *
512 TTGATGGAATGGGTAACTATAAATGGACTTTTCTTGCTAATGAATACCCTTTCTT-TTATGTTTC
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAATA--CTTT-TTCTTATGTTTC
* * * ** * *
576 TCAAAGTAGACACTCAATTATTCTCTGTTTTAACTAAAAATGTAAAGAAAGTT-AACTTAAAATT
63 TCGAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAA-AAAATTCAACTTAAAATC
* * *
640 AGTTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGACTT
127 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * ** * **
683 TTGAAAGAATGGGTGACTATAAATGTACTTTT-GAAGCTAATGAAT-CTTTTTACCTCACATTTC
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CTAATGAATACTTTTT--CTTATGTTTC
* * * * * * * **
746 TCTAGGTAGAAATACAATTATAGTCTGTTTTAAC-CAAAATGAAAAAAAAAATTTATCCCAAAAT
63 TCGAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATG--TAAAAAAATTCAACTTAAAAT
* * * * *
810 CAGTTATGAGCTTATAAAATCATTTAAAGTAAGTAATAAGCCTT
126 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * *
854 TTGAAGGAATGAGTGACTATAAATGGACTTTTCCTATTAATGAATTCTTTTTTCTTCATGTTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAATAC-TTTTTCTT-ATGTTTCT
* * * * * * * *
919 TGAGGTACACATTCAAATATTGTCTTTTTTAACCAAAAATGTAAAACAATTCAACTTAAAATCAG
64 CGAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ** *
984 TTATAAGATTATAAAACTATTTAAAGCAAGTAATAAGCCTT
129 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * *
1025 TTGAAGCAATGGGTGACTATAAATGAACTTTTCTTACCAATGAATGCTTTTTTCTTCATGTTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAATAC-TTTTTCTT-ATGTTTCT
* ** * * * *
1090 TGAGGTAGATGTTCAATTATAGTCTGTTTTAACCAAGAGTGTAAAAGAATTCAACTTAAAATCAA
64 CGAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* **
1155 TTATGAGATTATAAAACTATTTAAAGCAAGTAATAAGGCTT
129 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * * * * * *
1196 TTGAAGGAATGAGAGACTATAAATAGAATTTTCATT-CAAATAAATGAGTTTTT-TTACACGTTT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTC-TTACTAATGAAT-ACTTTTTCTT--ATGTTT
* * * * * * *
1259 CTTGAGGCAGGCATTCAATTATAATCTGTTTTAA-TAAAAAATATAAAAAAAGTCAACTTAGAAT
62 CTCGAGGTAGACATTCAATTATAGTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAAT
* * **
1323 CAATTTTGAGATTATAAAATCATTTAAAGCAAGTAATAAGGCTT
126 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * * * * *
1367 TTGATGAAATAGGTGACTATAAATGGACTTTTCTTACCAATGAAAACCCTTTTTTTTACGTTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAATA--CTTTTTCTTATGTTTCT
** * * * * * *
1432 TAAGGTAGACATTCAACTATTA-TCTTTTTTAACCATAAATATAAAAAAATTCAACTTAAAATTA
64 CGAGGTAGACATTCAATTA-TAGTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCA
** * * *
1496 GGTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGCCCT
128 ATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * *
1538 TTGAAGGAATGGGTGACTATAAATAGACTTTTCTTACCAATGAATTCCTTTTTCTTCATGTTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAA-TACTTTTTCTT-ATGTTTCT
* * * * *
1603 -TAGGTAGACATTAAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTCAAGTTAAAATCAG
64 CGAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* ** *
1667 TTATGAAATTATAAATA--ATTTAAAAAGAGTAATAAGCCTT
129 TTATGAGATTATAAA-ACCATTTAAAGTGAGTAATAAGGCTT
* * * *
1707 TTTAAGGAATGTGTGACTATAAATGGACTTTTCTTATTAATGAATACTTTATTCTTCATATTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAATACTTT-TTCTT-ATGTTTCT
* * * * * *
1772 CAAGGTACACATTCAATTATTA-TCTGTTTTAA-AAAAAATGTGAAACAAATTTAACTGAAAATC
64 CGAGGTAGACATTCAATTA-TAGTCTGTTTTAACTAAAAATGT-AAAAAAATTCAACTTAAAATC
* * *
1835 AGTTATAAGATTATAAAACTATTTAAAGTGAGTAATAAGGCTT
127 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * * *
1878 TTGAAGGAATAGGTGATTGTAAATGAACTTTTCTTA-TCAATGAATAGCTTTTTCTACATGTTTC
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACT-AATGAATA-CTTTTTCT-TATGTTTC
* * * * * * *
1942 -CTAAGGCAGGCACTCAACTATAGTCTGTTTTAACGAAAAATATAAAAAAAATT-AACTTAAAAT
63 TC-GAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGT-AAAAAAATTCAACTTAAAAT
* * *
2005 CAATTATGAGATTATCAAACTATTTAAAATGAGTAATAA-GCTTT
126 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TT
* ** **
2049 TTGAAGGAATGGGTGACTATAAATGGATTTTTCTTA-TCAATGAATGTTTTTTCTTCACATTTCT
1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACT-AATGAATACTTTTTCTT-ATGTTTCT
** *
2113 TAAGGTACACATTCAATT
64 CGAGGTAGACATTCAATT
2131 NNNNNNNNNN
Statistics
Matches: 1613, Mismatches: 294, Indels: 105
0.80 0.15 0.05
Matches are distributed among these distances:
167 2 0.00
168 9 0.01
169 99 0.06
170 463 0.29
171 954 0.59
172 71 0.04
173 15 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (169 bp):
TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTAATGAATACTTTTTCTTATGTTTCTCG
AGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATT
ATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
Found at i:1059 original size:513 final size:508
Alignment explanation
Indices: 1--2130 Score: 2089
Period size: 513 Copynumber: 4.2 Consensus size: 508
* * * * * *
1 TTGAAGGAATGAGAGACTATAAATGGACTTTTCTTTCCAATGAATGGCTTTTTCTACATGTTTTC
1 TTGAAGGAATGGGTGACTATAAATGAACTTTTCTTACCAATGAAT-CCTTTTTCTTCATG-TTTC
* ** * * * *
66 TGAGGTAGGTATTTAATTATAGTGTGTTTTAA-TAAAAAATGTAAAAAAATTTAACTTTAAATCA
64 TAAGGTAGACATTCAATTATAGTCTGTTTTAACT-AAAAATGT-AAAAAATTCAACTTAAAATCA
* * *
130 ATTATGAGATTATAAAACCATTTAAAGTGAGTAGTAAGGCTTTTGAAGGAATGGGTAACTATGAA
127 ATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
** * * * *
195 TGGACTTTTCTTGCCAATGAATGA-TTTTTA-AACATGTTTTTCGAGGCAGACATTCAATTATAG
192 TGGACTTTTCAAGCTAATGAAT-ACTTTTTATCACA--TTTCTCTAGGCAGACATTCAATTATAG
* * * * *
258 CCTGTTTTAATAAAAAATG-TAAAAAAATTCT-ATTTAAAATCAATTTTGAGATTATAAAACCAT
254 TCTGTTTTAA-AAAAAATGAAAAAAAAATT-TAACTTAAAATCAATTATGAGATTATAAAATCAT
* * * * *
321 TTAAAGCGAGTAATAAGGCTTTCGAAGAAATAAGAGACTATAAATGGACTTTT-TT-TCGAATAA
317 TTAAAGCAAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTATC-AATGA
** * * * * *
384 ATGAGTTTTTCTACACATTTCTTGAGGCATACATTCAATTATAGTCTTTTTTAGA-GAAAAATAT
381 ATGCTTTTTTCTACACGTTTCTTAAGGCAGACATTCAACTATAGTCTTTTTTA-ACCAAAAATAT
* * * * *
448 AAAAAAGTTCAACTTAAAATCAATTTTGAGATTATTAAACTATTTAAAGCGAGTAATAAGGCTT
445 AAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTT
* * * * *
512 TTGATGGAATGGGTAACTATAAATGGACTTTTCTTGCTAATGAATACCCTTTCTT-TT-ATGTTT
1 TTGAAGGAATGGGTGACTATAAATGAACTTTTCTTACCAATGAAT--CCTTT-TTCTTCATGTTT
* * **
575 CTCAAAGTAGACACTCAATTATTCTCTGTTTTAACTAAAAATGTAAAGAAAGTT-AACTTAAAAT
63 CT-AAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAA-AAA-TTCAACTTAAAAT
* * * * *
639 TAGTTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGACTTTTGAAAGAATGGGTGACTATA
125 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA
* * * * *
704 AATGTACTTTTGAAGCTAATGAAT-CTTTTTACCTCACATTTCTCTAGGTAGAAATACAATTATA
190 AATGGACTTTTCAAGCTAATGAATACTTTTTA--TCACATTTCTCTAGGCAGACATTCAATTATA
** * ** * *
768 GTCTGTTTTAACCAAAATGAAAAAAAAAATTTATCCCAAAATCAGTTATGAGCTTATAAAATCAT
253 GTCTGTTTTAAAAAAAATG-AAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAATCAT
* * * * *
833 TTAAAGTAAGTAATAAGCCTTTTGAAGGAAT-GAGTGACTATAAATGGACTTTTCCTATTAATGA
317 TTAAAGCAAGTAATAAGGCTTTTGAAGAAATAG-GTGACTATAAATGGACTTTTCTTATCAATGA
* * * * * * * * *
897 ATTCTTTTTTCTTCATGTTTCTTGAGGTACACATTCAAATATTGTCTTTTTTAACCAAAAATGTA
381 ATGCTTTTTTCTACACGTTTCTTAAGGCAGACATTCAACTATAGTCTTTTTTAACCAAAAATATA
* * *
962 AAACAATTCAACTTAAAATCAGTTATAAGATTATAAAACTATTTAAAGCAAGTAATAAGCCTT
446 AAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTT
* *
1025 TTGAAGCAATGGGTGACTATAAATGAACTTTTCTTACCAATGAATGCTTTTTTCTTCATGTTTCT
1 TTGAAGGAATGGGTGACTATAAATGAACTTTTCTTACCAATGAAT-CCTTTTTCTTCATGTTTC-
* ** * * *
1090 TGAGGTAGATGTTCAATTATAGTCTGTTTTAACCAAGAGTGTAAAAGAATTCAACTTAAAATCAA
64 TAAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAA-AATTCAACTTAAAATCAA
* ** * *
1155 TTATGAGATTATAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAAT
128 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * ** * * * * * * *
1220 AGAATTTTCATTCAAATAAATGAGTTTTTTTACACGTTTCT-TGAGGCAGGCATTCAATTATAAT
193 GGACTTTTCAAGCTAATGAAT-ACTTTTTAT-CACATTTCTCT-AGGCAGACATTCAATTATAGT
* * * * *
1284 CTGTTTTAATAAAAAAT-ATAAAAAAAGTCAACTTAGAATCAATTTTGAGATTATAAAATCATTT
255 CTGTTTTAA-AAAAAATGAAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAATCATTT
* *
1348 AAAGCAAGTAATAAGGCTTTTGATGAAATAGGTGACTATAAATGGACTTTTCTTACCAATGAAAA
319 AAAGCAAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTATCAATG--AA
** * * *
1413 CCCTTTTTT-T-TACGTTTCTTAAGGTAGACATTCAACTATTA-TCTTTTTTAACCATAAATATA
382 TGCTTTTTTCTACACGTTTCTTAAGGCAGACATTCAACTA-TAGTCTTTTTTAACCAAAAATATA
* ** * * *
1475 AAAAAATTCAACTTAAAATTAGGTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGCCCT
446 AAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTT
1538 TTGAAGGAATGGGTGACTATAAAT-AGACTTTTCTTACCAATGAATTCCTTTTTCTTCATGTTTC
1 TTGAAGGAATGGGTGACTATAAATGA-ACTTTTCTTACCAATGAA-TCCTTTTTCTTCATGTTTC
* * * * *
1602 TTAGGTAGACATTAAATTATAGTCTGTTTTAACTAAAAATATAAAAAAATTCAAGTTAAAATCAG
64 TAAGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGT-AAAAAATTCAACTTAAAATCAA
* ** * * *
1667 TTATGAAATTATAAATA--ATTTAAAAAGAGTAATAAGCCTTTTTAAGGAATGTGTGACTATAAA
128 TTATGAGATTATAAA-ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* * * * * * *
1730 TGGACTTTTCTTA-TTAATGAATACTTTATTCTTCATATTTCTCAAGGTACACATTCAATTATTA
192 TGGACTTTTC-AAGCTAATGAATACTTT-TT-ATCACATTTCTCTAGGCAGACATTCAATTA-TA
** * * * *
1794 -TCTGTTTTAAAAAAAATGTGAAACAAATTTAACTGAAAATCAGTTATAAGATTATAAAA-CTAT
253 GTCTGTTTTAAAAAAAATGAAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAATC-AT
** * * * *
1857 TTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGTGATTGTAAATGAACTTTTCTTATCAATGAA
317 TTAAAGCAAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTATCAATGAA
* * * * * *
1922 TAGC-TTTTTCTACATGTTTCCTAAGGCAGGCACTCAACTATAGTCTGTTTTAACGAAAAATATA
382 T-GCTTTTTTCTACACGTTTCTTAAGGCAGACATTCAACTATAGTCTTTTTTAACCAAAAATAT-
* * ** *
1986 AAAAAAATT-AACTTAAAATCAATTATGAGATTATCAAACTATTTAAAATGAGTAATAAGCTTT
445 AAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTT
* * * ** **
2049 TTGAAGGAATGGGTGACTATAAATGGATTTTTCTTATCAATGAATGTTTTTTCTTCACATTTCTT
1 TTGAAGGAATGGGTGACTATAAATGAACTTTTCTTACCAATGAATCCTTTTTCTTCATGTTTC-T
*
2114 AAGGTACACATTCAATT
65 AAGGTAGACATTCAATT
2131 NNNNNNNNNN
Statistics
Matches: 1328, Mismatches: 242, Indels: 98
0.80 0.15 0.06
Matches are distributed among these distances:
509 7 0.01
510 51 0.04
511 507 0.38
512 174 0.13
513 531 0.40
514 39 0.03
515 19 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (508 bp):
TTGAAGGAATGGGTGACTATAAATGAACTTTTCTTACCAATGAATCCTTTTTCTTCATGTTTCTA
AGGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAATTCAACTTAAAATCAATTA
TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGA
CTTTTCAAGCTAATGAATACTTTTTATCACATTTCTCTAGGCAGACATTCAATTATAGTCTGTTT
TAAAAAAAATGAAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCAA
GTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTTTTT
CTACACGTTTCTTAAGGCAGACATTCAACTATAGTCTTTTTTAACCAAAAATATAAAAAAATTCA
ACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTT
Found at i:3209 original size:170 final size:169
Alignment explanation
Indices: 2908--4499 Score: 1314
Period size: 171 Copynumber: 9.4 Consensus size: 169
2898 NNNNNNNNNG
* * * * *
2908 TAGACATTTAATTATAGTCTATTTTAACGAAAAATATAAAAAAATTCAACTTAAAGTCAGTTATG
1 TAGACATTCAATTATAGTCTGTTTTAAC-TAAAATATAAAAAAATTCAACTTAAAATCAATTATG
*** * ** * * *
2973 AGATTATAAAA-TCATTTAAAGCTTTTAATAAGACTTTTGATTGAATGGGTGACTACAAAAGGAC
65 AGATTATAAAACT-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
* * *
3037 TTTTCTTGCCAATGAATACTTGTGTCTTCATGTTTCTCT-AGC
129 TTTTCTTGCCAATGAATGCTT-TTTCTTCACGTTTCT-TGAGC
* * * * * * **
3079 TAGACATTTAATTATTGTCTGTTTTAACTAAAATGTAAGAGAATTCAATTTAAAATCAATTACAA
1 TAGACATTCAATTATAGTCTGTTTTAACTAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
* * *
3144 GATTATAAAACTATTTAAAGTGAGTAATAAGGCTTTT-ACAGAAATAGGAGACTATAAATGGACT
66 GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGAGACTATAAATGGACT
* * *
3208 TTTCTTACCAATGAATGCTTGTTTCATCACATTTCTTGAGAC
130 TTTCTTGCCAATGAATGCTT-TTTCTTCACGTTTCTTGAG-C
* * * *
3250 AAG-CATTCAATTATAGTCTATTTTAA-TGAAAA-ATGTAAAAACTTCAA-TCTAAAATCAATTA
1 TAGACATTCAATTATAGTCTGTTTTAACT-AAAATAT-AAAAAAATTCAACT-TAAAATCAATTA
* * * * * **
3311 TTAGATTATAAAACCATTAAAAGCGAGTAATAAGCCTTTTGAAGGAATGAGTTACTATAAATGGA
63 TGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGA
* * * *
3376 CTTTTCTTGTCAATGAATCCATTTTTCTTCACGTTTCTTAAGG
128 CTTTTCTTGCCAATGAATGC-TTTTTCTTCACGTTTCTTGAGC
*
3419 TAGACATTCAATTATAGTCTGTTTTAA-TCAAAATTATAAAAAAATTTAACTTAAAATCAATTAT
1 TAGACATTCAATTATAGTCTGTTTTAACT-AAAA-TATAAAAAAATTCAACTTAAAATCAATTAT
* * * *
3483 GAGATTATAAAACCATTTAAAGCGAGTAATAAAGTTTTTGTAGGAATGGGAGACTATAAATGGAC
64 GAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
* * *
3548 TTTTCTTGCCAATGAATGCTTTTTTCTTCCCGTTTCTAGAGG
129 TTTTCTTGCCAATGAATGC-TTTTTCTTCACGTTTCTTGAGC
* * * * * * * *
3590 TA-AGCATTCGATTATAGTTTGGTTTAACCAAAAATATAAAAAATTTCAACTTCAAATTAGTTAT
1 TAGA-CATTCAATTATAGTCTGTTTTAA-CTAAAATATAAAAAAATTCAACTTAAAATCAATTAT
* * **
3654 GAGATTATAAAAC-ATTTAAAGCCAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATATAC
64 GAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
* * * * * *
3718 TTTTCTTTCTAATGAATAGATTTTTCTGCACATTTGC-CGAGGC
129 TTTTCTTGCCAATGAAT-GCTTTTTCTTCACGTTT-CTTGA-GC
* * * *
3761 AAG-CATTCAATTGTAGTCTATTTTAA-TGAAAAACATAAAAAAATT-AACTTAAAATCAATTAT
1 TAGACATTCAATTATAGTCTGTTTTAACT--AAAATATAAAAAAATTCAACTTAAAATCAATTAT
* * * * * *
3823 GAGATTGTAAAACTATTTAAAGTGAGTACTAAGGATTTTGAAGGAAT-AGATGACTGT-AATGGA
64 GAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGA-GACTATAAATGGA
* * ** * *
3886 CATTTT-TTTCCAATGAATGTCTTTTTCTTAATATTTCTTGTGG
128 C-TTTTCTTGCCAATGAATG-CTTTTTCTTCACGTTTCTTGAGC
* * * * *
3929 TAGACATTAAATTATAATCTGTTTTAACTACTAATATAAAAGAATTTGAA-TCTAAAATCAATTA
1 TAGACATTCAATTATAGTCTGTTTTAACTA-AAATATAAAA-AAATTCAACT-TAAAATCAATTA
* * *
3993 CGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGATA-GAATGGGAGATTATAAATGG
63 TGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGAGACTATAAATGG
* * *
4057 ATTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTTGAGA
127 ACTTTTCTTGCCAATGAATGC-TTTTTCTTCACGTTTCTTGAGC
* * *
4101 TAGACATTCAATTATAGTCTGTTTTAACCAAAAGTGTAAAAAAATTTAACTTAAAATCAATTATG
1 TAGACATTCAATTATAGTCTGTTTTAACTAAAA-TATAAAAAAATTCAACTTAAAATCAATTATG
* * * * * *
4166 AGATTGTAAAA-TCATTTAAAACAAGTAATGAGGCTTTTGAAGGAATGGGTGACAATAAATGGAC
65 AGATTATAAAACT-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
*** *** * * **
4230 TTTTCTTATAAATGAATGGCTTTTTCCAGATGGTTAC-CAATG-
129 TTTTCTTGCCAATGAAT-GCTTTTTCTTCA-CGTTTCTTGA-GC
* * * * *
4272 TAGGCATTCAATTATAGTCTGTTTTAA-TGAAAAATGTAAAAACAGTCAACTTAAAATGAATTAT
1 TAGACATTCAATTATAGTCTGTTTTAACT--AAAATATAAAAAAATTCAACTTAAAATCAATTAT
* * * * ** * ** *
4336 TAGATCACAAAACTATTTAAAACGAACAATAAGG-TTTTGAAAGAATGGGTTAGTATAAATGGAC
64 GAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
* * * * * * *
4400 -TTTCTTTCAAATAAATAGATTTTT-TACACGCTTCTCGAGAC
129 TTTTCTTGCCAATGAAT-GCTTTTTCTTCACGTTTCTTGAG-C
* * * * * ** *
4441 AAG-CATTGAATTATAGTTTGTTTCAAC-AAAAAATTTAAAGATTCAACTTAAAATCAATT
1 TAGACATTCAATTATAGTCTGTTTTAACTAAAATATAAAAAAATTCAACTTAAAATCAATT
4500 TTGNNNNNNN
Statistics
Matches: 1150, Mismatches: 219, Indels: 109
0.78 0.15 0.07
Matches are distributed among these distances:
166 25 0.02
167 4 0.00
168 30 0.03
169 113 0.10
170 441 0.38
171 445 0.39
172 92 0.08
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (169 bp):
TAGACATTCAATTATAGTCTGTTTTAACTAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTT
TTCTTGCCAATGAATGCTTTTTCTTCACGTTTCTTGAGC
Found at i:3541 original size:171 final size:170
Alignment explanation
Indices: 2907--4409 Score: 1337
Period size: 170 Copynumber: 8.8 Consensus size: 170
2897 NNNNNNNNNN
* * * * *
2907 GTAGACATTTAATTATAGTCTATTTTAA-CGAAAAATATAAAAAAATTCAACTTAAAGTCAGTTA
1 GTAGACATTCAATTATAGTCTGTTTTAATC-AAAAATATAAAAAAATTTAACTTAAAATCAATTA
* *** * ** * * *
2971 TGAGATTATAAAATCATTTAAAGCTTTTAATAAGACTTTTGATTGAATGGGTGACTACAAAAGGA
65 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGA
* * * *
3036 CTTTTCTTGCCAATGAATACTTGTGTCTTCATGTTTCTCT-AG
130 CTTTTCTTGTCAATGAATGCTT-TTTCTTCACGTTTCT-TGAG
* * * * * * * * * *
3078 CTAGACATTTAATTATTGTCTGTTTTAA-CTAAAATGTAAGAGAATTCAATTTAAAATCAATTAC
1 GTAGACATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACTTAAAATCAATTAT
* * * * *
3142 AAGATTATAAAACTATTTAAAGTGAGTAATAAGGCTTTT-ACAGAAATAGGAGACTATAAATGGA
66 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGAGACTATAAATGGA
** * *
3206 CTTTTCTTACCAATGAATGCTTGTTTCATCACATTTCTTGAG
130 CTTTTCTTGTCAATGAATGCTT-TTTCTTCACGTTTCTTGAG
** * * * * *
3248 ACA-AGCATTCAATTATAGTCTATTTTAATGAAAAATGT-AAAAACTTCAA-TCTAAAATCAATT
1 GTAGA-CATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACT-TAAAATCAATT
* * * * **
3310 ATTAGATTATAAAACCATTAAAAGCGAGTAATAAGCCTTTTGAAGGAATGAGTTACTATAAATGG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGG
* *
3375 ACTTTTCTTGTCAATGAATCCATTTTTCTTCACGTTTCTTAAG
129 ACTTTTCTTGTCAATGAATGC-TTTTTCTTCACGTTTCTTGAG
*
3418 GTAGACATTCAATTATAGTCTGTTTTAATCAAAATTATAAAAAAATTTAACTTAAAATCAATTAT
1 GTAGACATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACTTAAAATCAATTAT
* * *
3483 GAGATTATAAAACCATTTAAAGCGAGTAATAAAGTTTTTGTAGGAATGGGAGACTATAAATGGAC
66 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
* * *
3548 TTTTCTTGCCAATGAATGCTTTTTTCTTCCCGTTTCTAGAG
131 TTTTCTTGTCAATGAATGC-TTTTTCTTCACGTTTCTTGAG
* * * * * * *
3589 GTA-AGCATTCGATTATAGTTTGGTTTAACCAAAAATAT-AAAAAATTTCAACTTCAAATTAGTT
1 GTAGA-CATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTT-AACTTAAAATCAATT
* * **
3652 ATGAGATTATAAAA-CATTTAAAGCCAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAT
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGG
* * * *
3716 ACTTTTCTT-TCTAATGAATAGATTTTTCTGCACATTTGC-CGAG
129 ACTTTTCTTGTC-AATGAAT-GCTTTTTCTTCACGTTT-CTTGAG
* * * * *
3759 GCA-AGCATTCAATTGTAGTCTATTTTAATGAAAAACATAAAAAAA-TTAACTTAAAATCAATTA
1 GTAGA-CATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACTTAAAATCAATTA
* * * * * * *
3822 TGAGATTGTAAAACTATTTAAAGTGAGTACTAAGGATTTTGAAGGAAT-AGATGACTGT-AATGG
65 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGA-GACTATAAATGG
* ** *
3885 ACATTTT-TT-TCCAATGAATGTCTTTTTCTTAATATTTCTTGTG
129 AC-TTTTCTTGT-CAATGAATG-CTTTTTCTTCACGTTTCTTGAG
* * ** *
3928 GTAGACATTAAATTATAATCTGTTTTAA-CTACTAATATAAAAGAATTTGAA-TCTAAAATCAAT
1 GTAGACATTCAATTATAGTCTGTTTTAATC-AAAAATATAAAAAAATTT-AACT-TAAAATCAAT
* *
3991 TACGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGATA-GAATGGGAGATTATAAAT
63 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGAGACTATAAAT
* * *
4055 GGATTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTTGAG
127 GGACTTTTCTTGTCAATGAATGC-TTTTTCTTCACGTTTCTTGAG
* * * *
4100 ATAGACATTCAATTATAGTCTGTTTTAACCAAAAGTGTAAAAAAATTTAACTTAAAATCAATTAT
1 GTAGACATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACTTAAAATCAATTAT
* * * * * * *
4165 GAGATTGTAAAATCATTTAAAACAAGTAATGAGGCTTTTGAAGGAATGGGTGACAATAAATGGAC
66 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
* * *** * * ** *
4230 TTTTCTTATAAATGAATGGCTTTTTCCAGATGGTTAC-CAAT
131 TTTTCTTGTCAATGAAT-GCTTTTTCTTCA-CGTTTCTTGAG
* * * * * * *
4271 GTAGGCATTCAATTATAGTCTGTTTTAATGAAAAATGTAAAAACAGTCAACTTAAAATGAATTAT
1 GTAGACATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACTTAAAATCAATTAT
* * * * * ** * ** *
4336 TAGATCACAAAACTATTTAAAACGAACAATAAGG-TTTTGAAAGAATGGGTTAGTATAAATGGAC
66 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
4400 -TTTCTT-TCAA
131 TTTTCTTGTCAA
4410 ATAAATAGAT
Statistics
Matches: 1087, Mismatches: 207, Indels: 79
0.79 0.15 0.06
Matches are distributed among these distances:
168 5 0.00
169 100 0.09
170 449 0.41
171 448 0.41
172 84 0.08
173 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (170 bp):
GTAGACATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTTAACTTAAAATCAATTAT
GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGAC
TTTTCTTGTCAATGAATGCTTTTTCTTCACGTTTCTTGAG
Found at i:3868 original size:511 final size:504
Alignment explanation
Indices: 2907--4409 Score: 1620
Period size: 511 Copynumber: 2.9 Consensus size: 504
2897 NNNNNNNNNN
* * * * *
2907 GTAGACATTTAATTATAGTCTATTTTAACGAAAAATATAAAAAAATTCAACTTAAAGTCAGTTAT
1 GTAGACATTAAATTATAGTCTGTTTTAACG-AAAATATAAAAAAATTTAACTTAAAATCAATTAT
* *** * * * *
2972 GAGATTATAAAATCATTTAAAGCTTTTAAT-AAGACTTTTGATTGAATGGGTGACTACAAAAGGA
65 GAGATTATAAAACCATTTAAAGCGAGTAATAAAG-CTTTTG-TAGAATGGGAGACTATAAATGGA
* * * ** * * *
3036 CTTTTCTTGCCAATGAATACTTGTGTCTTCATGTTTCTCTAGCTAGACATTTAATTATTGTCTGT
128 CTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTAGAGATAGACATTCAATTATAGTCTGT
* * * **
3101 TTTAA-CTAAAATGTAAGAGAA-TTCAATTTAAAATCAATTACAAGATTATAAAACTATTTAAAG
193 TTTAACCAAAAATGTAA-AAAATTTCAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAG
** * * *
3164 TGAGTAATAAGGCTTTT-ACAGAAAT-AGGAGACTATAAATGGACTTTTCTTACCAATGAATGCT
256 CAAGTAATAAGGCTTTTGA-AGGAATGA-GAGACTATAAATGGACTTTTCTTTCAAATGAATGCT
* *
3227 TGTTTCATCACATTTCTTGAGACAAGCATTCAATTATAGTCTATTTTAATGAAAAATGT-AAAAA
319 T-TTTC-TCACATTTC-CGAGGCAAGCATTCAATTATAGTCTATTTTAATGAAAAATGTAAAAAA
* * * *
3291 CTTCAA-TCTAAAATCAATTATTAGATTATAAAACCATTAAAAGCGAGTAATAAGCCTTTTGAAG
381 ATT-AACT-TAAAATCAATTATTAGATTATAAAACTATTTAAAGCGAGTAATAAG-GTTTTGAAG
* *
3355 GAATGAGTTACTATAAATGGACTTTTCTTGTCAATGAAT-CCATTTTTCTTCACGTTTCTTAAG
443 GAATGAGTTACTATAAATGGACTTTTCTT-TCAATGAATGCC-TTTTTCTTAACATTTCTTAAG
*
3418 GTAGACATTCAATTATAGTCTGTTTTAATC-AAAATTATAAAAAAATTTAACTTAAAATCAATTA
1 GTAGACATTAAATTATAGTCTGTTTTAA-CGAAAA-TATAAAAAAATTTAACTTAAAATCAATTA
*
3482 TGAGATTATAAAACCATTTAAAGCGAGTAATAAAGTTTTTGTAGGAATGGGAGACTATAAATGGA
64 TGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGTA-GAATGGGAGACTATAAATGGA
** * * *
3547 CTTTTCTTGCCAATGAATGCTTTTTTCTTCCCGTTTCTAGAGGTA-AGCATTCGATTATAGTTTG
128 CTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTAGAGATAGA-CATTCAATTATAGTCTG
* * * * *
3611 GTTTAACCAAAAATATAAAAAATTTCAACTTCAAATTAGTTATGAGATTATAAAACATTTAAAGC
192 TTTTAACCAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACATTTAAAGC
* ** * *
3676 CAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATATACTTTTCTTTCTAATGAATAGATTT
257 AAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTTCAAATGAAT-GCTTT
* **
3741 TTCTGCACATTTGCCGAGGCAAGCATTCAATTGTAGTCTATTTTAATGAAAAACATAAAAAAATT
321 TTCT-CACATTT-CCGAGGCAAGCATTCAATTATAGTCTATTTTAATGAAAAATGTAAAAAAATT
* * * *
3806 AACTTAAAATCAATTATGAGATTGTAAAACTATTTAAAGTGAGTACTAAGGATTTTGAAGGAAT-
384 AACTTAAAATCAATTATTAGATTATAAAACTATTTAAAGCGAGTAATAAGG-TTTTGAAGGAATG
* * * * **
3870 AGATGACTGT-AATGGACATTTT-TTTCCAATGAATGTCTTTTTCTTAATATTTCTTGTG
448 AG-TTACTATAAATGGAC-TTTTCTTT-CAATGAATGCCTTTTTCTTAACATTTCTTAAG
* * * *
3928 GTAGACATTAAATTATAATCTGTTTTAACTACTAATATAAAAGAATTTGAA-TCTAAAATCAATT
1 GTAGACATTAAATTATAGTCTGTTTTAACGA-AAATATAAAAAAATTT-AACT-TAAAATCAATT
* * *
3992 ACGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGATAGAATGGGAGATTATAAATGG
63 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTG-TAGAATGGGAGACTATAAATGG
* *
4057 ATTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTTGAGATAGACATTCAATTATAGTCTG
127 ACTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTAGAGATAGACATTCAATTATAGTCTG
* *
4122 TTTTAACCAAAAGTGTAAAAAAATTT-AACTTAAAATCAATTATGAGATTGTAAAATCATTTAAA
192 TTTTAACCAAAAATGT-AAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAA
* * * * *
4186 ACAAGTAATGAGGCTTTTGAAGGAATGGGTGACAATAAATGGACTTTTCTTAT-AAATGAATGGC
255 GCAAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTT-TCAAATGAAT-GC
* * * * * *
4250 TTTTTC-CAGATGGTTACCAATGTAGGCATTCAATTATAGTCTGTTTTAATGAAAAATGTAAAAA
318 TTTTTCTCACAT--TT-CCGAGGCAAGCATTCAATTATAGTCTATTTTAATGAAAAATGTAAAAA
* * * * * * ** *
4314 CAGTCAACTTAAAATGAATTATTAGATCACAAAACTATTTAAAACGAACAATAAGGTTTTGAAAG
380 -AATTAACTTAAAATCAATTATTAGATTATAAAACTATTTAAAGCGAGTAATAAGGTTTTGAAGG
* *
4379 AATGGGTTAGTATAAATGGAC-TTTCTTTCAA
444 AATGAGTTACTATAAATGGACTTTTCTTTCAA
4410 ATAAATAGAT
Statistics
Matches: 833, Mismatches: 125, Indels: 68
0.81 0.12 0.07
Matches are distributed among these distances:
509 2 0.00
510 86 0.10
511 502 0.60
512 191 0.23
513 52 0.06
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (504 bp):
GTAGACATTAAATTATAGTCTGTTTTAACGAAAATATAAAAAAATTTAACTTAAAATCAATTATG
AGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGTAGAATGGGAGACTATAAATGGACTT
TTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTAGAGATAGACATTCAATTATAGTCTGTTTT
AACCAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACATTTAAAGCAAGT
AATAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTTCAAATGAATGCTTTTTCTC
ACATTTCCGAGGCAAGCATTCAATTATAGTCTATTTTAATGAAAAATGTAAAAAAATTAACTTAA
AATCAATTATTAGATTATAAAACTATTTAAAGCGAGTAATAAGGTTTTGAAGGAATGAGTTACTA
TAAATGGACTTTTCTTTCAATGAATGCCTTTTTCTTAACATTTCTTAAG
Found at i:8947 original size:171 final size:169
Alignment explanation
Indices: 8282--9213 Score: 784
Period size: 170 Copynumber: 5.5 Consensus size: 169
8272 NNNNNNNTGA
* * * * *
8282 AAAATGTAAAAACAA-TCAACTTAAAATGAATTATGAGATTACAAAACCATTGAATGCGAGAAAT
1 AAAATGTAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
** * * * * * ** *
8346 AAGATTTTTGAAAGAATGAGTTATTATAAATAGACTTTTTCTTCAAATAAATGGGTTTTTGTACA
65 AAGGCTTTTGAAGGAATGAGTGACTATAAATAGAC-TTTTCTTCCAATGAATGTCTTTTTCTACA
* * * * * *
8411 C-TCTTCTCGAGGTAGGC-ATTTAATTATAATTTATTTTAAA
129 CGTTTTCT-GAGGTAGGCAATTCAATTATAGTCTGTTTTAAG
** * ** * **
8451 AAAAT-TTTAAAAAGTCTGCTTAAAATCAATTTTGAGATTATAAAACCATTTAAAATGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * * * *
8515 AGGCTTTTGAAGAAATAAGTGACTATAAATGGACTTTTTTTGTCAATGAATGTTTTTTTCTTCAT
66 AGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTT-CCAATGAATGTCTTTTTCTACAC
* *
8580 G-TTTCTCGAGGTA--CATATTCAATTGA-AGT-TCGTTTGAATA
130 GTTTTCT-GAGGTAGGCA-ATTCAATT-ATAGTCT-GTTTTAA-G
* * * * *
8620 AAAATGTAAAACAAA-TCAACTCAAAATCAATTAGGAGATTATAAAACTATATT-AAGCTAATAA
1 AAAATGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT-TTAAAGCGAGTAA
* * * * *
8683 TAAGCCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATCTCTTTTTCTTC
64 TAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTT-CCAATGAATGTCTTTTTCTAC
* *
8748 ACGTTTCTCT-AGGTAGAC-ATTCAATTATAGTCTGTTTTAACC
128 ACGTTT-TCTGAGGTAGGCAATTCAATTATAGTCTGTTTTAA-G
* *
8790 AAAAGGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAAT
1 AAAA-TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * * *
8855 AACGCTTTTGAAGGAATGAGAGACTATAAATAGACTTCTCTTCTGAATAAATGTGTTTTTATACT
65 AAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTC-CAATGAATGTCTTTTTCTACA
* * * * * *
8920 TGTTTTCTAAGATAGGCAATT-AATTATAATATGTGTTAAAG
129 CGTTTTCTGAGGTAGGCAATTCAATTATAGTCTGT-TTTAAG
* * * * * *
8961 AAAAATGT-AAAAAATTTAACTTAAAATCAATTATGAGTTTTTGAAACCATTTAAAGTGAGTAAC
1 -AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
** * *
9025 AAGGCTTTTGAAGGAATGACAGAATATAAATAGACTTTTCTTACCAATGAATGACTTTTTCTACA
65 AAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTT-CCAATGAATGTCTTTTTCTACA
*
9090 CG-TTTCTTGAGGTAGGC-ATTCACTTATAGTCTGTTTTAATG
129 CGTTTTC-TGAGGTAGGCAATTCAATTATAGTCTGTTTTAA-G
* * * *
9131 AAGAATATAAAAAAATTCAACTT-AAATACAATTATGAGATTATAAAACTATTTAAAGCTATTAA
1 AA-AATGTAAAAAAATTCAACTTAAAAT-CAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
*
9195 TAAGGCTTTTGAAAGAATG
64 TAAGGCTTTTGAAGGAATG
9214 GGAGCCTAAT
Statistics
Matches: 610, Mismatches: 121, Indels: 62
0.77 0.15 0.08
Matches are distributed among these distances:
166 1 0.00
167 9 0.01
168 110 0.18
169 26 0.04
170 262 0.43
171 187 0.31
172 15 0.02
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.36
Consensus pattern (169 bp):
AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
AGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTCCAATGAATGTCTTTTTCTACACG
TTTTCTGAGGTAGGCAATTCAATTATAGTCTGTTTTAAG
Found at i:8989 original size:341 final size:340
Alignment explanation
Indices: 8469--9213 Score: 828
Period size: 341 Copynumber: 2.2 Consensus size: 340
8459 AAAAAGTCTG
* ** * *
8469 CTTAAAATCAATTTTGAGATTATAAAACCATTTAAAATGAGTAATAAGGCTTTTGAAGAAATAAG
1 CTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAG
* * * * * * * * * * *
8534 TGACTATAAATGGACTTTTTTTGTCAATGAATGTTTTTTTCTTCATGTTTCTCGAGGTACATATT
65 AGACTATAAATAGACTTCTCTTCTCAATAAATGTGTTTTTATACATGTTTCTCAAGATACATATT
* * *
8599 CAATTGAAGTTCGTTTGAATAAAAATGTAAAACAAATCAACTCAAAATCAATTAGGAGATTATAA
130 CAATTGAAATTCGTTTAAAGAAAAATGTAAAACAAATCAACTCAAAATCAATTAGGAGATTATAA
* * *** * * *
8664 AACTATATT-AAGCT-AATAATAAGCCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
195 AACCAT-TTAAAG-TGAATAACAAGCCTTTTGAAGGAATGACAGAATATAAATAGACTTTTCTTA
* *
8727 CCAATGAATCTCTTTTTCTTCACGTTTCTCT-AGGTAGACATTCAATTATAGTCTGTTTTAACCA
258 CCAATGAATCACTTTTTCTACACGTTTCT-TGAGGTAGACATTCAATTATAGTCTGTTTTAACCA
*
8791 A-AAGGGTAAAAAAATTCAA
322 AGAA-GATAAAAAAATTCAA
*
8810 CTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAACGCTTTTGAAGGAATGAG
1 CTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAG
* *
8875 AGACTATAAATAGACTTCTCTTCTGAATAAATGTGTTTTTATACTTGTTT-TCTAAGATAGGCA-
65 AGACTATAAATAGACTTCTCTTCTCAATAAATGTGTTTTTATACATGTTTCTC-AAGATA--CAT
* * * * *
8938 ATT-AATT-ATAATAT-GTGTTAAAGAAAAATGTAAAA-AATTTAACTTAAAATCAATTATGAGT
127 ATTCAATTGA-AAT-TCGT-TTAAAGAAAAATGTAAAACAAATCAACTCAAAATCAATTAGGAGA
* * * *
8999 TTTTGAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGAATGACAGAATATAAATAGACTTTT
189 TTATAAAACCATTTAAAGTGAATAACAAGCCTTTTGAAGGAATGACAGAATATAAATAGACTTTT
* * *
9064 CTTACCAATGAATGACTTTTTCTACACGTTTCTTGAGGTAGGCATTCACTTATAGTCTGTTTTAA
254 CTTACCAATGAATCACTTTTTCTACACGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAA
** *
9129 TGAAGAATATAAAAAAATTCAA
319 CCAAGAAGATAAAAAAATTCAA
* * *
9151 CTT-AAATACAATTATGAGATTATAAAACTATTTAAAGCTATTAATAAGGCTTTTGAAAGAATG
1 CTTAAAAT-CAATTATGAGATTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
9214 GGAGCCTAAT
Statistics
Matches: 339, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
340 12 0.04
341 303 0.89
342 22 0.06
343 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (340 bp):
CTTAAAATCAATTATGAGATTATAAAACATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGA
GACTATAAATAGACTTCTCTTCTCAATAAATGTGTTTTTATACATGTTTCTCAAGATACATATTC
AATTGAAATTCGTTTAAAGAAAAATGTAAAACAAATCAACTCAAAATCAATTAGGAGATTATAAA
ACCATTTAAAGTGAATAACAAGCCTTTTGAAGGAATGACAGAATATAAATAGACTTTTCTTACCA
ATGAATCACTTTTTCTACACGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAGAA
GATAAAAAAATTCAA
Found at i:11372 original size:170 final size:168
Alignment explanation
Indices: 11003--11439 Score: 477
Period size: 170 Copynumber: 2.6 Consensus size: 168
10993 CATTGGCAAG
* * * * * *
11003 AAAAGTCTATTTATAGTCACCCATTGCTTCAAAAGGCTTATTACTCACTATGAATGGTTTTAAAT
1 AAAAGTCTATTTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAAA-
* * * *
11068 TCTCATAATTGATTTTAAGTTGAATTGTTTTACAGTTTTTATTAAAACAGACTAGAATTGAATGA
65 TCTCATAATTGATTTTAAGTTGAATT-TTTTTCAGTTTTTATTAAAAAAGACTAGAAGTAAATGA
* * **** *
11133 TTACCTCGAGAAATGTGTAGAAAAATCCATTCATTGGTAAG
129 -TACCTCGAAAAATGTGTAGAAAAATACATTCATACAAAAA
* * * *
11174 AAAAGTCCATTTATTGTCTCCCATTCCTTGAAAAGCCTTATTACTCGCTTTAAATAGTTTTGAAA
1 AAAAGTCTATTTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTT-AAA
* *
11239 TCTCATATTTGATTTTAAGTTGAATTTTTTTCA-TTTTTCATTAAAAAAGACTATAAGTAAATG-
65 TCTCATAATTGATTTTAAGTTGAATTTTTTTCAGTTTTT-ATTAAAAAAGACTAGAAGTAAATGA
* *
11302 T-CCGTCTTGAAAAATGTGTAGAAAAATATATTTATACAAAAA
129 TACC-TC--GAAAAATGTGTAGAAAAATACATTCATACAAAAA
* ** * *
11344 AAAAGTCTATTTATAGTTTCTTATTCCTTCAAAAGCCTTAGTACTCGATTTAAATGGTTTTATAA
1 AAAAGTCTATTTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTA-AA
*
11409 TCTCA-AACTTGATTTTAAGTTCAATTTTTTT
65 TCTCATAA-TTGATTTTAAGTTGAATTTTTTT
11440 TACTTTTTTG
Statistics
Matches: 223, Mismatches: 36, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
167 2 0.01
168 3 0.01
169 7 0.03
170 132 0.59
171 76 0.34
172 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (168 bp):
AAAAGTCTATTTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAAAT
CTCATAATTGATTTTAAGTTGAATTTTTTTCAGTTTTTATTAAAAAAGACTAGAAGTAAATGATA
CCTCGAAAAATGTGTAGAAAAATACATTCATACAAAAA
Found at i:18542 original size:171 final size:170
Alignment explanation
Indices: 18095--19624 Score: 1497
Period size: 171 Copynumber: 9.0 Consensus size: 170
18085 NNNNNACAAC
** * * * * *
18095 CAATAATTGAATGTGTACCAAGAGAAATGTAAAGAAACAAGCATTCATTGGAAAGAAAAATCCAT
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
* * * * *
18160 TTACAGTCACCCATTCCATCAAAAGCCTTATTACTCGCTTTAAAT-GTTTTTATAATCTCCTAAT
66 TTATAGTCA-CCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAG-TTTTATAATCTCATAAC
* *
18224 TGATTTTAAGTTTAATTGTTTTACATATTTT-ATTAAAACAGA
129 TGATTTTAAGTTGAATTGTTTTACAT-TTTTGGTTAAAACAGA
* * * * *
18266 CTACAATTGAATGTGT--CTTAAGAAACGTGTAGAAAAAAGCATTCATTGGCAAGAAAAGTTCAT
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
18329 TTATAGTCACCCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAACT
66 TTATAGTCA-CCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAACT
* * * *
18394 GATTTTAAGTTAAATTGTTTTACATTTCTGGTTACAACAAA
130 GATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAAACAGA
* *
18435 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAACAAGCATTCATTGGTAA-ACAAAGTCCA
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGA-AAAGTCCA
* * *
18499 TTTATAGTCATCCATTCCTTTAAAAGACTTATTACTCGCTTTAATTTA-TTTTATAATCTCATAA
65 TTTATAGTCA-CCATTCCTTCAAAAGGCTTATTACTCGCTTTAA-ATAGTTTTATAATCTCATAA
* * **
18563 CTTATTTTAAGTTGAATT-TCTCTACATTTTTCATTAAAACAGA
128 CTGATTTTAAGTTGAATTGT-TTTACATTTTTGGTTAAAACAGA
* * * * * *
18606 TAATAATTGAATGTGCA-CTGTTACAAACGTGAAGAAAAAAGCTTTCATTGGCAAAAAAAAAGTC
1 CAATAATTGAATGTGTACCT-TGAGAAACGTGAAGAAAAAAGCATTCATTGGC--AAGAAAAGTC
** * * * * *
18670 CATTTATAGTCACCTATTCCTTCGGAAGCCTTATTACTCACTTTAGATGGTTTTATAACCTCATA
63 CATTTATAGTCACC-ATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATA
18735 ACTGATTTTAAGTTGAATT-TTTTACATTTTTGGTTAAAACAGA
127 ACTGATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAAACAGA
* ** * * * ** *
18778 CAATAATTGAATGTCTACCTCAAGAAACATAAATAAAAGGGTATTCATTGGCAAGAAAAGTCCAT
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
* * * * *
18843 TTATAGTCATCAATTCCTTAAAAAGGCTTATTACTCGCTTTAAATGGTTTCATAATCTCATAATT
66 TTATAGTCA-CCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAACT
* * * * * * *
18908 GACTTCAAGTTGAATTTTTTTATATTTTTAGTTAAAAAAAA
130 GATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAAACAGA
* * * *
18949 CTATAATTGAATGTCTACCTTGAGAAATGTGAAGAAAAAGAG-ATTCATTGGCAAAAAAAGTCCA
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAA-AGCATTCATTGGCAAGAAAAGTCCA
* * * * *
19013 TTTATACTCAACCATTCCTTCAAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATGTCCA-AA
65 TTTATAGTC-ACCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCT-CATAA
* * * * **
19077 TTGATTTAAAGTTCAATTGTTTCACATTTTTCATTAAAACAGA
128 CTGATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAAACAGA
* * ** *** *
19120 CTACAATTGAATGTGTACCTCAAGAAATAAGAAGAAAAAAGCATTAATTGGCAAGAAAAGTCCAT
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
* * *
19185 TTATAGTCACTCATTCTTTCAAAAGGCTTATTACTCGCTTTAAATAATTTTATAATCTCGTAACT
66 TTATAGTCAC-CATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAACT
* * * * ** * *
19250 AATTTTAGGTTAAATTGGTGCATATTTTTAGTTAAAACAGA
130 GATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAAACAGA
* * * * * *
19291 TAATAATTGAATGTGTACTTTGAGAAACATGAAGAAAAAAGTATTCATTGACAAGAAAAGTCTAT
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
************** * *
19356 TTATAGTCANNNNNNNNNNNNNNNGACTTATTACTCACTTTAAATAGTTTTATAATCTCATAACT
66 TTATAGTCA-CCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAACT
* * *
19421 GATTTTAAG-TCAATTTTTTTTACTTTTTTGGTTAAAACAGA
130 GATTTTAAGTTGAA-TTGTTTTACATTTTTGGTTAAAACAGA
* ** * ** * * * *
19462 CTATAATTGAATGCCTACCTTCAGAAATATTAAG-AAAAGGGATTCATTGGCAAGAAAAGTCTAT
1 CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
* *
19526 TTATAGTCACCTATTCCCTCAAAAGGCTTATCA-TCGCTTTAAACTA-TTTTATAATCTCATAAC
66 TTATAGTCACC-ATTCCTTCAAAAGGCTTATTACTCGCTTTAAA-TAGTTTTATAATCTCATAAC
* * * *
19589 AGATTTTAAGTTGAATTTTTTTAAATTTTTAGTTAA
129 TGATTTTAAGTTGAATTGTTTTACATTTTTGGTTAA
19625 NNNNNNNNNN
Statistics
Matches: 1115, Mismatches: 217, Indels: 56
0.80 0.16 0.04
Matches are distributed among these distances:
168 3 0.00
169 194 0.17
170 140 0.13
171 632 0.57
172 65 0.06
173 80 0.07
174 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.36
Consensus pattern (170 bp):
CAATAATTGAATGTGTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
TTATAGTCACCATTCCTTCAAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAACTG
ATTTTAAGTTGAATTGTTTTACATTTTTGGTTAAAACAGA
Found at i:21112 original size:170 final size:171
Alignment explanation
Indices: 20815--21171 Score: 467
Period size: 170 Copynumber: 2.1 Consensus size: 171
20805 NNNNNNNNNN
*
20815 TCAAAAGCCTTATTACTCGCTTGAAATGGTTTTCTAATCTCATAATTGATTTTAAGTTAAATTTT
1 TCAAAAGCCTTATTACTCGCTTGAAATGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTTT
* *
20880 TTTACAGATTTCTTGAAAAAAGACTATAATTGAATGTTTGCCTTAAGAAACATGAAGAAAAAAGA
66 TTTACAGATTTCTTGAAAAAAGACTATAATTGAATGTCTACCTTAAGAAACATGAAGAAAAAA-A
** * *
20945 -ATTCAATGGTGTAA-A-AAGTCCATTTATAGTA-TCTCATTCCT
130 CATTC-A-GCAGTAAGATAAGTCCATTTATAG-ACACCCATTCCT
* * *
20986 TCAAAAGCCTTATTACTCGCTCT-AAATGGTTTTATAATTTGATAATTGATTTT-AGTTGAATTT
1 TCAAAAGCCTTATTACTCGCT-TGAAATGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTT
* * * * * *
21049 TTTTACA-TTTTTTATTAAAAAAGACTATACTTGAATGTCTACCTTGAGAAACGTGAAGAAAAAA
65 TTTTACAGATTTCT-TGAAAAAAGACTATAATTGAATGTCTACCTTAAGAAACATGAAGAAAAAA
21113 ACATTCAGCAGTAAGATAAGTCCATTTATAGACACCCATTCCT
129 ACATTCAGCAGTAAGATAAGTCCATTTATAGACACCCATTCCT
21156 TCAAAAGCCTTATTAC
1 TCAAAAGCCTTATTAC
21172 NNNNNNNNNN
Statistics
Matches: 164, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
168 5 0.03
169 8 0.05
170 102 0.62
171 48 0.29
172 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (171 bp):
TCAAAAGCCTTATTACTCGCTTGAAATGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTTT
TTTACAGATTTCTTGAAAAAAGACTATAATTGAATGTCTACCTTAAGAAACATGAAGAAAAAAAC
ATTCAGCAGTAAGATAAGTCCATTTATAGACACCCATTCCT
Found at i:22100 original size:171 final size:169
Alignment explanation
Indices: 21784--22432 Score: 448
Period size: 171 Copynumber: 3.8 Consensus size: 169
21774 NNNNNNCCTC
* * ** *
21784 AAGAAACATGAAGAAAAAAGTATTCATTGGTAAG-AAAGTTTCATTTATAGTCA-CTCATTCCTT
1 AAGAAACATGAAGAAAAAGGAATTCATTGACAAGAAAAG-TCCATTTATAGTCACCT-ATTCCTT
* ********** * * * *
21847 CAAAAGGCTTATTACTCGCTTTAA-ATGATTTNNNNNNNNNNTAACTAATTTTAGGTTGAATTGT
64 CAAAAGGCTTATTACTTGCTTTAATA-G-TTTTATAATCTCATAACTGACTTTAAGTTGAATTTT
* * *
21911 TGTATATTTTTAGTTAAAACAGATAATAATTGAATGTGTACCAT
127 TTTACATTTTTAGTTAAAACAGATAATAATTGAATGTCTACC-T
* * * * *
21955 GAGAAACATGAAGAAAAAAGTATTCATTGACAAGAAAAATCCATTTATAGTCACCTATTGCTTCA
1 AAGAAACATGAAGAAAAAGGAATTCATTGACAAGAAAAGTCCATTTATAGTCACCTATTCCTTCA
* ** ** **
22020 AAAGACTTATTACTCACTTTCAATAGTTTTATAATCTCATAACTGAGATTAAGTCAAATTTTTTT
66 AAAGGCTTATTACTTGCTTT-AATAGTTTTATAATCTCATAACTGACTTTAAGTTGAATTTTTTT
* ********* *
22085 ACATTTTTGGTTAAAACAGACT-ATAATTNNNNNNNNNNCTT
130 ACATTTTTAGTTAAAACAGA-TAATAATT-GAATGTCTACCT
* * * * * * * *
22126 TAGAAACATTAAG-AAAAGGGATTCATTGGCAAGAAAAGTCCATTTGTAGTCGCCCATTCCCTCA
1 AAGAAACATGAAGAAAAAGGAATTCATTGACAAGAAAAGTCCATTTATAGTCACCTATTCCTTCA
* * *
22190 AAAGGCTTATTACTTGCGTTAA-ACGATTTTATAATCTCATAACAGATTTTAAGTTGAATTTTTT
66 AAAGGCTTATTACTTGCTTTAATA-G-TTTTATAATCTCATAACTGACTTTAAGTTGAATTTTTT
**********
22254 NNNNNNNNNNGTTAAAACAGATAATAATTGAATGTCTACCT
129 TACATTTTTAGTTAAAACAGATAATAATTGAATGTCTACCT
* * * * *
22295 CAAGAAACATGAATAAAAGGGAATTCATTGACAAGAAAAGTCCATTTATAGTTACTTATTTCTT-
1 -AAGAAACATGAAGAAAAAGGAATTCATTGACAAGAAAAGTCCATTTATAGTCACCTATTCCTTC
* * * *
22359 AAGAAGGCTTATTACTTGCTCTAAATGGTTTAATAATCTCATAACTAACTTTAAGTTGAATTTTT
65 AA-AAGGCTTATTACTTGCT-TTAATAGTTTTATAATCTCATAACTGACTTTAAGTTGAATTTTT
22424 TTACATTTT
128 TTACATTTT
22433 NNNNNNNNNN
Statistics
Matches: 358, Mismatches: 106, Indels: 28
0.73 0.22 0.06
Matches are distributed among these distances:
168 1 0.00
169 6 0.02
170 120 0.34
171 216 0.60
172 14 0.04
173 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.35
Consensus pattern (169 bp):
AAGAAACATGAAGAAAAAGGAATTCATTGACAAGAAAAGTCCATTTATAGTCACCTATTCCTTCA
AAAGGCTTATTACTTGCTTTAATAGTTTTATAATCTCATAACTGACTTTAAGTTGAATTTTTTTA
CATTTTTAGTTAAAACAGATAATAATTGAATGTCTACCT
Done.