Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403206.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_875.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28975

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1135
171
6.6
167
78
7
906
37
10
12
35
1.79
5--905
343
2.6
342
81
4
931
38
11
12
35
1.80
1--1105
341
3.2
338
79
4
1090
38
10
12
35
1.78
1575--3339
170
10.4
171
77
2
1481
38
10
12
36
1.77
1575--3199
341
4.8
338
75
4
1196
38
10
12
36
1.77
3608--4507
171
5.3
171
75
3
540
35
11
14
35
1.82
4572--4640
22
3.2
21
68
17
52
60
7
2
28
1.38
6814--7292
171
2.8
169
81
5
491
36
14
12
36
1.84
7427--8426
171
5.8
172
72
3
507
34
13
11
36
1.80
9271--9639
172
2.1
171
81
3
429
35
14
12
37
1.84
14216--14946
170
4.3
170
74
4
407
35
11
11
38
1.77
15885--17554
171
9.8
170
74
5
777
37
11
12
35
1.79
15885--17200
170
7.7
170
75
6
650
38
11
12
35
1.80
15888--17552
340
4.9
334
72
9
723
37
11
12
35
1.79
21285--21311
10
2.7
10
100
0
54
18
7
0
74
1.05
23269--23663
172
2.3
171
79
6
408
36
13
13
36
1.84
23517--23845
172
2.0
162
81
4
315
37
13
11
34
1.81
24101--24891
171
4.6
170
73
5
536
34
13
12
35
1.82

Tables:   1

The End!