Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403208.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_877.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2292
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.26

Warning! 685 characters in sequence are not A, C, G, or T


Found at i:1337 original size:171 final size:169

Alignment explanation


    Indices: 1161--1717  Score: 473
    Period size: 171  Copynumber: 3.3  Consensus size: 169

       1151 GCAAAATGTT

                         *                          *                      * 
       1161 AGAAAAAACCATTGATTGAGAAGAAAAGTCCATTTATAGTAACCTATTCCTTCAAAAGCATTATT
          1 AGAAAAAA-CATTCATTGAGAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCATTACT

                           *        * *                       *    *      *  
       1226 ACTCGCTTTAAATGATTTTATAATGTAATAATTTATTTTAAGTTGAATTAATTTATATTATTCGT
         65 ACTCGCTTTAAATGACTTTATAATCTCATAATTTATTTTAAGTTGAATTATTTTAAATT-TTAGT

                                 *  *           *   *
       1291 TAAAATAGACTATAATTGAATGTTCATCTCGAGAAATGTGT
        129 TAAAATAGACTATAATTGAATCTTTATCTCGAGAAACGTGA

                    *        *                     *     *    *  *           
       1332 AGAAAAAGGCATTCATTAAGGAA-AAAAGTCCATTTATAATCACCCATTCTTTGAAAAG-ACTTA
          1 AGAAAAA-ACATTCATTGA-GAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCA-TTA

                  *                             * **********    *       *    
       1395 CTACTCTCTTTAAATTG-CTTTATAATCTCATAATTAANNNNNNNNNNAATTTTTTTACATTTTT
         63 CTACTCGCTTTAAA-TGACTTTATAATCTCATAATTTATTTTAAGTTGAATTATTTTA-AATTTT

            *                   *            *          
       1459 GGTTAAAATAGACTATAATTAAATCTTTATCTCAAGAAACGTGA
        126 AGTTAAAATAGACTATAATTGAATCTTTATCTCGAGAAACGTGA

                               *  *                                     *  **
       1503 AGAAAAAGACATTCATTGATAAAAAAAGTCCATTTATAGTCA-CTCATTCCTTCAAAAGCCTTGG
          1 AGAAAAA-ACATTCATTGAGAAGAAAAGTCCATTTATAGTCACCT-ATTCCTTCAAAAGCATTAC

                              *                  *                           
       1567 TACT-GCCTTTAAAT-AGGTTTATAATCTCATAATTTGTTTTAAGTTGAA-TATTTTTAAAATTT
         64 TACTCG-CTTTAAATGA-CTTTATAATCTCATAATTTATTTTAAGTTGAATTA-TTTT-AAATTT

              *      * *                  *          * * 
       1629 TAATTAAAACATACTATAATTGAATCTTTACCTCGAGAAACATAA
        125 TAGTTAAAATAGACTATAATTGAATCTTTATCTCGAGAAACGTGA

                                          *              
       1674 AGAAAAAAACATTCATTG-GCAAGAAAAGTGCATTTATAGTCACC
          1 AG-AAAAAACATTCATTGAG-AAGAAAAGTCCATTTATAGTCACC

       1718 CGTNNNNNNN


Statistics
Matches: 297,  Mismatches: 73, Indels: 31
        0.74            0.18        0.08

Matches are distributed among these distances:
 170    6  0.02
 171  277  0.93
 172   14  0.05

ACGTcount: A:0.39, C:0.13, G:0.11, T:0.36


Consensus pattern (169 bp):   
AGAAAAAACATTCATTGAGAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCATTACTA
CTCGCTTTAAATGACTTTATAATCTCATAATTTATTTTAAGTTGAATTATTTTAAATTTTAGTTA
AAATAGACTATAATTGAATCTTTATCTCGAGAAACGTGA
Done.