genome.fa.s5957.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403210.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_879.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28071

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625--2580	173	5.5	170	80	5	978	36	14	11	38	1.82
1656--2575	345	2.7	343	82	5	1068	36	13	11	38	1.81
2817--5740	171	17.0	170	76	6	2209	35	13	11	38	1.81
2831--5741	345	8.5	342	78	6	2282	35	13	11	38	1.81
6991--7033	21	2.0	21	81	0	50	51	18	6	23	1.70
6709--8774	171	12.1	171	79	5	1765	35	15	11	37	1.83
8889--10120	171	7.3	171	81	3	1249	36	13	11	38	1.81
10537--10974	171	2.6	170	75	10	374	35	13	11	37	1.80
11753--13620	171	11.0	171	79	5	1748	35	13	11	38	1.82
14219--14551	47	7.2	47	75	8	290	27	17	28	25	1.98
14230--14557	45	7.2	44	78	6	287	28	18	28	24	1.98
14230--14551	92	3.5	92	82	1	369	27	18	29	25	1.98
14770--15442	171	3.9	171	85	3	865	34	14	12	37	1.85
14770--15442	341	2.0	342	85	3	910	34	14	12	37	1.85
16107--16181	23	3.3	23	65	10	64	29	18	32	20	1.96
16036--16384	92	3.8	93	82	4	359	27	16	29	26	1.96
16052--16392	137	2.5	137	80	5	368	28	16	28	26	1.97
16036--16392	47	7.8	45	78	5	259	28	16	29	25	1.97
16592--17769	169	6.9	174	74	8	748	35	13	11	37	1.80
16592--17301	341	2.1	344	81	5	832	36	13	10	39	1.80
18951--19682	170	4.3	170	74	5	568	33	12	10	38	1.78
20456--20795	172	2.0	162	77	14	327	35	12	10	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23279--23355	23	3.3	23	66	20	61	28	16	29	24	1.97
23252--23423	47	3.7	46	80	11	163	26	17	29	26	1.97
23280--23418	45	3.0	45	85	8	158	28	16	29	25	1.97
23417--23517	45	2.2	46	87	3	141	26	16	30	25	1.97
24442--24518	23	3.3	23	72	16	86	28	22	28	20	1.98
24464--24541	24	3.3	24	69	16	72	26	19	25	28	1.99
24430--25001	47	12.3	47	76	7	479	27	16	30	25	1.97
24479--24996	139	3.7	139	79	6	548	27	16	30	26	1.97
24418--24977	92	6.0	94	73	11	359	27	17	30	25	1.97
25552--25764	31	6.9	31	84	2	221	20	21	18	40	1.92
25560--25739	93	1.9	93	86	0	252	19	20	19	41	1.91
25550--25764	93	2.3	93	82	0	250	20	21	18	40	1.92
25873--25970	31	3.2	31	86	0	106	37	22	19	20	1.94
27289--27365	23	3.3	23	70	10	75	22	33	19	24	1.97
27408--27515	47	2.3	48	88	6	166	28	29	14	26	1.95

Tables:   1

The End!