Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018403212.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_881.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9020
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.30
Warning! 2071 characters in sequence are not A, C, G, or T
Found at i:681 original size:170 final size:170
Alignment explanation
Indices: 363--1375 Score: 433
Period size: 170 Copynumber: 5.9 Consensus size: 170
353 NNNNNNNNAA
* * * * *
363 TCTCATAAATGATTTTAAGTTTAGTTTTTTACTTTTTTGGTTAAAAAAAACTATAATTGAATGCT
1 TCTCATAAACGATTTTAAGTTTAGTTTCTTACTTTTTTGATTAAAAAAAACTAAAATTGAATGCC
** * ** * * *
428 TACCCCAAGAAACGTAAAGAGAAATGCATTTATTGGCAAGAAAAGTCTATTTATAGTCACCCGTT
66 TACCCCAAGAAACACAAAGAAAAAAACATTCATTGGCAAGAAAAGTCTATTGATAGTCACCCATT
*
493 CCTTTAAAATCCTTATTAC-CAGCTTTAAAT-GATTTTATTC
131 CCTTCAAAATCCTTATTACTC-GCTTTAAATAG-TTTTATTC
* * *
533 TCTCATAAACGATTTTAAGTTTTGTTTCTTA-TATTTTTGATTAAAACAGACTAAAATTGAATGC
1 TCTCATAAACGATTTTAAGTTTAGTTTCTTACT-TTTTTGATTAAAAAAAACTAAAATTGAATGC
** * * * * * * *
597 CTACTTCTAGAAACACCAGGAAAAAAACATTCATTGGTAAGAAATGTCTATTGATAGTTAGCCAT
65 CTACCCCAAGAAACACAAAGAAAAAAACATTCATTGGCAAGAAAAGTCTATTGATAGTCACCCAT
* **
662 TCCTTCAAAGGT-CTTATTACTCGCTTTAAATAGTTTTATAA
130 TCCTTCAAA-ATCCTTATTACTCGCTTTAAATAGTTTTATTC
* ** * * * * * * * * * * *
703 TCTCCTAATTGA-TTTCAGCTTCAATTTTTTTTGCATTATTGGTTAAAACAGACTATAATTGAAT
1 TCTCATAAACGATTTTAAG-TT-TA-GTTTCTTACTTTTTTGATTAAAAAAAACTAAAATTGAAT
* ** * ****** * * * * * *
767 GTCTACCTTATGAAATGTGTGGAGAAAAGCATTCATTAGCAACAAAAATCTATTTATAGTCACCC
63 GCCTACCCCAAGAAACACAAAGAAAAAAACATTCATTGGCAAGAAAAGTCTATTGATAGTCACCC
* * * * ***********
832 ATTCTTTGAAAAGCCTTATTACTAGCTTTAAANNNNNNNNNNA
128 ATTCCTTCAAAATCCTTATTACTCGCTTTAAATAGTTTTATTC
* * * * * * *
875 TCTCATAAATGATTTTAAGTTTAGGTTT-TTGCATTATTGGTTAAAATAGAA-TATAATTGAATG
1 TCTCATAAACGATTTTAAGTTTA-GTTTCTTACTTTTTTGATTAAAA-AAAACTAAAATTGAATG
* ** **** ** * * *
938 TCTACCTTAAGAAATGTGAAGAAAAATGCATTCATTGGCAAAAAAAGTCTATTTATAGCCACCCA
64 CCTACCCCAAGAAACACAAAGAAAAAAACATTCATTGGCAAGAAAAGTCTATTGATAGTCACCCA
* * ********** **
1003 TTCCTTGAAAAGCCTTATTNNNNNNNNNNAATAGTTTTATAA
129 TTCCTTCAAAATCCTTATTACTCGCTTTAAATAGTTTTATTC
* * * * * * * *
1045 TCT-AAAAATTGATTTTAAGTTCAATTTTTTTTACTTTTTTGATTAAAATAGACTATAATTGAAT
1 TCTCATAAA-CGATTTTAAGTT-TA-GTTTCTTACTTTTTTGATTAAAAAAAACTAAAATTGAAT
* ** **** * *
1109 GTCTACCTTAAGAAATGTGAAGAAAAAAAATGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
63 GCCTACCCCAAGAAACACAAAG-AAAAAAA--CATTCATTGGCAAGAAAAGTCTATTGATAGTCA
* * * * * **
1174 CCAATTCTTTCAAAAACCTTATTACTAGCTTTAAATGGTTTTATAA
125 CCCATTCCTTCAAAATCCTTATTACTCGCTTTAAATAGTTTTATTC
* * * * * * * * *
1220 ACTCATAAATGATTTTAAGTTTAGTTTTTTACATTATTGGTTAAAACAGACTATAATTGAAT-CT
1 TCTCATAAACGATTTTAAGTTTAGTTTCTTACTTTTTTGATTAAAAAAAACTAAAATTGAATGC-
** * * ** * * * * * *
1284 CTACCTTAGGAAATATGAAGAAAAAAGCATTCATTGGTAAGAAAAGTCCATTCATAGTCTCTCAT
65 CTACCCCAAGAAACACAAAGAAAAAAACATTCATTGGCAAGAAAAGTCTATTGATAGTCACCCAT
* *
1349 TCCTTCAAAAGCCTTATTACTCACTTT
130 TCCTTCAAAATCCTTATTACTCGCTTT
1376 NNNNNNNNNN
Statistics
Matches: 655, Mismatches: 168, Indels: 40
0.76 0.19 0.05
Matches are distributed among these distances:
169 10 0.02
170 322 0.49
171 13 0.02
172 168 0.26
173 62 0.09
174 1 0.00
175 75 0.11
176 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.37
Consensus pattern (170 bp):
TCTCATAAACGATTTTAAGTTTAGTTTCTTACTTTTTTGATTAAAAAAAACTAAAATTGAATGCC
TACCCCAAGAAACACAAAGAAAAAAACATTCATTGGCAAGAAAAGTCTATTGATAGTCACCCATT
CCTTCAAAATCCTTATTACTCGCTTTAAATAGTTTTATTC
Found at i:831 original size:342 final size:341
Alignment explanation
Indices: 387--1375 Score: 988
Period size: 342 Copynumber: 2.9 Consensus size: 341
377 TTAAGTTTAG
* * * * * ** *
387 TTTTTTACTTTTTTGGTTAAAAAAAACTATAATTGAATG-CTTACCCCAAGAAACGT-AA-AGAG
1 TTTTTTACATTATTGATTAAAACAGACTATAATTGAATGTC-TACCTTAAGAAATGTGAAGAGAG
* * * * *
449 AAATGCATTTATTGGCAAGAAAAGTCTATTTATAGTCACCCGTTCCTTT-AAAATCCTTATTACC
65 AAAAGCATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATT-CTTTCAAAAACCTTATTACT
** * * * * *
513 AGCTTTAAATGATTTTATTCTCTCATAAACGATTTTAAGTTTTGTTTCTTATATTTTTGATTAAA
129 AGCTTTAAATGATTTTATAATCTCATAAATGATTTTAAGTTTAGTTT-TTACATTATTGGTTAAA
* * ** * * *
578 ACAGACTAAAATTGAATGCCTACTTCTAGAAACACCAGGAAAAAAACATTCATTGGTAAGAAATG
193 ACAGACTATAATTGAATGCCTACTT-TAGAAATATGAAGAAAAAAGCATTCATTGGTAAGAAAAG
* * * * **
643 TCTATTGATAGTTAGCCATTCCTTCAAAGGTCTTATTACTCGCTTTAAATAGTTTTATAATCTCC
257 TCTATTCATAGTTA-CCATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTAA
* *
708 TAATTGA-TTTCAGCTTCAATT
321 AAATTGATTTTAAG-TTCAATT
* * * *
729 TTTTTTGCATTATTGGTTAAAACAGACTATAATTGAATGTCTACCTTATGAAATGTG-TG-GAGA
1 TTTTTTACATTATTGATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAATGTGAAGAGAGA
* * * * *
792 AAAGCATTCATTAGCAACAAAAATCTATTTATAGTCACCCATTCTTTGAAAAGCCTTATTACTAG
66 AAAGCATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCTTTCAAAAACCTTATTACTAG
********** * *
857 CTTTAAANNNNNNNNNNATCTCATAAATGATTTTAAGTTTAGGTTTTTGCATTATTGGTTAAAAT
131 CTTTAAATGATTTTATAATCTCATAAATGATTTTAAGTTTA-GTTTTTACATTATTGGTTAAAAC
* * * * * * *
922 AGAATATAATTGAATGTCTACCTTAAGAAATGTGAAGAAAAATGCATTCATTGGCAAAAAAAGTC
195 AGACTATAATTGAATGCCTA-CTTTAGAAATATGAAGAAAAAAGCATTCATTGGTAAGAAAAGTC
* ** * **********
987 TATTTATAGCCACCCATTCCTTGAAAAGCCTTATTNNNNNNNNNNAATAGTTTTATAATCTAAAA
259 TATTCATAGTTA-CCATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTAAAA
1052 ATTGATTTTAAGTTCAATT
323 ATTGATTTTAAGTTCAATT
* * * * *
1071 TTTTTTACTTTTTTGATTAAAATAGACTATAATTGAATGTCTACCTTAAGAAATGTGAAGAAAAA
1 TTTTTTACATTATTGATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAATGTGAAGAGAGA
* *
1136 AAATGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCAATTCTTTCAAAAACCTTATTACTA
66 AAA-GCATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCTTTCAAAAACCTTATTACTA
* *
1201 GCTTTAAATGGTTTTATAAACTCATAAATGATTTTAAGTTTAGTTTTTTACATTATTGGTTAAAA
130 GCTTTAAATGATTTTATAATCTCATAAATGATTTTAAGTTTAG-TTTTTACATTATTGGTTAAAA
*
1266 CAGACTATAATTGAAT-CTCTACCTTAGGAAATATGAAGAAAAAAGCATTCATTGGTAAGAAAAG
194 CAGACTATAATTGAATGC-CTACTTTA-GAAATATGAAGAAAAAAGCATTCATTGGTAAGAAAAG
*
1330 TCCATTCATAGTCT-CTCATTCCTTCAAAAGCCTTATTACTCACTTT
257 TCTATTCATAGT-TAC-CATTCCTTCAAAAGCCTTATTACTCACTTT
1376 NNNNNNNNNN
Statistics
Matches: 510, Mismatches: 122, Indels: 27
0.77 0.19 0.04
Matches are distributed among these distances:
341 4 0.01
342 298 0.58
343 14 0.03
344 10 0.02
345 184 0.36
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.37
Consensus pattern (341 bp):
TTTTTTACATTATTGATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAATGTGAAGAGAGA
AAAGCATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCTTTCAAAAACCTTATTACTAG
CTTTAAATGATTTTATAATCTCATAAATGATTTTAAGTTTAGTTTTTACATTATTGGTTAAAACA
GACTATAATTGAATGCCTACTTTAGAAATATGAAGAAAAAAGCATTCATTGGTAAGAAAAGTCTA
TTCATAGTTACCATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTAAAAATT
GATTTTAAGTTCAATT
Found at i:2298 original size:171 final size:160
Alignment explanation
Indices: 2009--2339 Score: 351
Period size: 171 Copynumber: 2.0 Consensus size: 160
1999 NNNNTAAATA
* * * * * **
2009 GTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTACGTTTTTAGTTAAAACAGACTTTA
1 GTTTTATAATCTCATAATTAATTTTAAGTTGAAATTTTCTACATTTTTAGTTAAAACAAACAATA
* * * * * * *
2074 ATTGACTGCTTGCCTCAAGAAACATATAGAAAAACCCATTTGTTTGTAAGAAAATTCCATTTATA
66 ATTGAATGCTTGCCTCAAGAAACATATAGAAAAACACATTTATTAGCAAGAAAAGTCAATTTATA
* *
2139 GTCTCTCATT-TCTTCAAAAGCCTTATTACTC
131 GTCAC-CATTCT-TTCAAAAGCCTTAATACTC
2170 NNNNNNNNNNGTTTTATAATCTCATAATTAATTTTAAGTT-AAATTTTCCTACATTTTTAGTTAA
1 ----------GTTTTATAATCTCATAATTAATTTTAAGTTGAAATTTT-CTACATTTTTAGTTAA
* * * *
2234 AACAAACAATAATTGAATGTTTGCCTCGAGAAACATATAGAAGAATACATTTATTAGCAAGAAAA
55 AACAAACAATAATTGAATGCTTGCCTCAAGAAACATATAGAAAAACACATTTATTAGCAAGAAAA
2299 GTCAATTTATAGTCACCATTCTTTCAAAAGCCTTAATACTC
120 GTCAATTTATAGTCACCATTCTTTCAAAAGCCTTAATACTC
2340 ACTTTAAATA
Statistics
Matches: 138, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
170 28 0.20
171 110 0.80
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.38
Consensus pattern (160 bp):
GTTTTATAATCTCATAATTAATTTTAAGTTGAAATTTTCTACATTTTTAGTTAAAACAAACAATA
ATTGAATGCTTGCCTCAAGAAACATATAGAAAAACACATTTATTAGCAAGAAAAGTCAATTTATA
GTCACCATTCTTTCAAAAGCCTTAATACTC
Found at i:6216 original size:171 final size:170
Alignment explanation
Indices: 5951--6483 Score: 464
Period size: 173 Copynumber: 3.1 Consensus size: 170
5941 TAATAGATTG
* * * * * * *
5951 TAATTGAATGCGCACCTTGAAAAACATGTG-A-AAAAAC-CATTCATTAAGAAGAGAATTCCATT
1 TAATTGAATGC-TACC-TCAAAAA-ATGTGAAGAAAAACACATTAATTGACAAGAAAAGTCCATT
* * * * * *
6013 TATAGTC-TCTCATTCCTTCAAAAGCCTTATTACTCGTTTTAAATAGTTTTATAATCTCATAATT
63 TATAGTCACCT-ATTCCTTGAAAAGCATTATTACTCGCTTTAAATGGTTTTATAACCTCATAATT
* *
6077 GATTTTAAGTTGAATTCTTTTATATTTTTCATTAAAACAGACTA
127 AATTTTAAGTTGAATTTTTTTATATTTTTCATTAAAACAGACTA
** *** * *
6121 TAATTGAATGCATACCTCAGGAAATGTGAAGAAAAAGGTATTCATTGGCAAGAAAAGTCCATTTA
1 TAATTGAATGC-TACCTCAAAAAATGTGAAGAAAAACACATTAATTGACAAGAAAAGTCCATTTA
* * * *
6186 TAGTCACCTTTTCCTTGAAAAGCATTATTACTCACTTTAAATGGTTTTATACCCTCAAAATTAAT
65 TAGTCACCTATTCCTTGAAAAGCATTATTACTCGCTTTAAATGGTTTTATAACCTCATAATTAAT
* * ** * *
6251 TTTAAGTTCAATTTTTTTTTACTTTTTTGGTTAAAACAGAATG
130 TTTAAGTTGAATTTTTTTATA--TTTTTCATTAAAACAGACTA
* * * **
6294 TAATTGAATGTCTACATTAAAAAATGTGAAGAAGAACACATTAATTGACAAGAAAAGTTTATTTA
1 TAATTGAATG-CTACCTCAAAAAATGTGAAGAAAAACACATTAATTGACAAGAAAAGTCCATTTA
* ********** *
6359 TAGTCACCAATTCCTTCG-NNNNNNNNNNTACTCGCTTTAAATGGTTTTATGACCTCATAATTAA
65 TAGTCACCTATTCCTT-GAAAAGCATTATTACTCGCTTTAAATGGTTTTATAACCTCATAATTAA
* * *
6423 TTTTAAGGTGAATTGTTTTTATATTTTTCATTAAAATAAACTA
129 TTTTAAGTTGAATT-TTTTTATATTTTTCATTAAAACAGACTA
6466 TAATTGAATGCTTACCTC
1 TAATTGAATGC-TACCTC
6484 GAGAAACGCA
Statistics
Matches: 284, Mismatches: 69, Indels: 18
0.77 0.19 0.05
Matches are distributed among these distances:
168 5 0.02
169 5 0.02
170 19 0.07
171 91 0.32
172 30 0.11
173 125 0.44
174 9 0.03
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.38
Consensus pattern (170 bp):
TAATTGAATGCTACCTCAAAAAATGTGAAGAAAAACACATTAATTGACAAGAAAAGTCCATTTAT
AGTCACCTATTCCTTGAAAAGCATTATTACTCGCTTTAAATGGTTTTATAACCTCATAATTAATT
TTAAGTTGAATTTTTTTATATTTTTCATTAAAACAGACTA
Found at i:8366 original size:22 final size:22
Alignment explanation
Indices: 8341--8383 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8331 GTCTCTCATT
8341 CTTTCAAA-AGCCTTATTACCTA
1 CTTT-AAATAGCCTTATTACCTA
**
8363 CTTTAAATAGTTTTATTACCT
1 CTTTAAATAGCCTTATTACCT
8384 CAAAATTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (22 bp):
CTTTAAATAGCCTTATTACCTA
Found at i:8393 original size:171 final size:172
Alignment explanation
Indices: 7960--8874 Score: 871
Period size: 172 Copynumber: 5.3 Consensus size: 172
7950 AGAGAAAGGC
* * * * * *
7960 ATTCATTGGCAAGCAAAGTCCATTTATAGTCACTCATTTCTTTAAAAGCCTTACTACCCACTTTA
1 ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCTACTTTA
* * * * *
8025 AATAGTTTTATTACCTCAAAATTAATTTTATGTTCAATTGTTTTTACATTTTTTGTTAAAACAAA
66 AATAGTTTTATTATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTAGTTAAAACAGA
* * * * * *
8090 CAATAATTGTACGTCTACC-TCAAGAAACATAAAGAAAAA-ATT
131 CTATAATTGAATGTCTACCTTGAA-AAACGTGAAGAAAAACA-T
* * ** * **********
8132 ATTCATTGGTAAGAAAAGTCTATTTATAGTCTCTTGTTCCTTTAAAAGCCTNNNNNNNNNNTTTA
1 ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCTACTTTA
* * * * ** * * * *
8197 AATGGTTTTATAATCTGATAATTGATTTTAACTTCAATTTTTTTTACATTATCAATTAAAATAGA
66 AATAGTTTTATTATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTAGTTAAAACAGA
*
8262 TTATAATTGAATGTCTACCTTGAAAAACGTGAAGAAAAACAT
131 CTATAATTGAATGTCTACCTTGAAAAACGTGAAGAAAAACAT
* * *
8304 ATTCATT-GCAAGAAAAATTCATTTATAGTCTCTCATTCTTTCAAAAGCCTTATTACCTACTTTA
1 ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCTACTTTA
* * *
8368 AATAGTTTTATTACCTCAAAATTGATTTTATGTTCAATTTCTTTTACATTTTTAGTTAAAACATA
66 AATAGTTTTATTATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTAGTTAAAACAGA
* * *
8433 CTATAATTGAAGGTCTACCTTGAGAAACTTGAAGAAAACAACAT
131 CTATAATTGAATGTCTACCTTGAAAAACGTGAAG-AAA-AACAT
* * * * **
8477 -TT-ATTGGCAAGAAAAGTTCATTTATAGTCTCTCTTTCCTTCAAAAGCCTTATTACTTGCTTNN
1 ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCTACTTTA
******** * * ** * * *
8540 NNNNNNNNTATAATCTCATAATTGATTTTAACTTCAATTTTTTTAACATTATTGGTTAAAACAGA
66 AATAGTTTTATTATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTAGTTAAAACAGA
* * * * *
8605 TTATAATTAAATGTCTA-CATCAAGAAACGTGAAGAAAAACAC
131 CTATAATTGAATGTCTACCTTGAA-AAACGTGAAGAAAAACAT
* *
8647 ATCCATTGACAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACC-A-TTGT
1 ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCTACTT-T
** * *
8710 AAATAGTTTTATTATCTCAAAATCAATTTTATGTTCAATTTCTTTTATATTTTTAGTTAAAACAG
65 AAATAGTTTTATTATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTAGTTAAAACAG
* *
8775 ACTATAATTGAATCTCTACCTTAGGAAATA--TGAAGAAAAA-AGT
130 ACTATAATTGAATGTCTACCTT--GAAAAACGTGAAGAAAAACA-T
* * *
8818 ATTCATTGGTAAGAAAAGTCCATTCATAGTCTCCCATTCCTTCAAAAGCCTTATTAC
1 ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTAC
8875 TNNNNNNNNN
Statistics
Matches: 584, Mismatches: 146, Indels: 27
0.77 0.19 0.04
Matches are distributed among these distances:
170 7 0.01
171 253 0.43
172 311 0.53
173 11 0.02
174 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.38
Consensus pattern (172 bp):
ATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCTACTTTA
AATAGTTTTATTATCTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTTAGTTAAAACAGA
CTATAATTGAATGTCTACCTTGAAAAACGTGAAGAAAAACAT
Found at i:8608 original size:343 final size:341
Alignment explanation
Indices: 7959--8875 Score: 1096
Period size: 343 Copynumber: 2.7 Consensus size: 341
7949 AAGAGAAAGG
* * *
7959 CATTCATTGGCAAGCAAAGTCCATTTATAGTCACTCATTTCTTT-AAAAGCCTTACTACCCACTT
1 CATTCATT-GCAAGAAAAGTCCATTTATAGTCTCTCA-TTCTTTCAAAAGCCTTATTA-CCACTT
*
8023 TAAATAGTTTTATTACCTCAAAATTAATTTTATGTTCAATTGT-TTTTACATTTTTTGTTAAAAC
63 TAAATAGTTTTATTACCTCAAAATTAATTTTATGTTCAATT-TCTTTTACATTTTTAGTTAAAAC
* * * * * *
8087 AAACAATAATTGTACGTCTACCTCAAGAAACATAAAGAAAAAATTATTCATTGGTAAGAAAAG-T
127 AAACTATAATTGAACGTCTACCT-TAGAAACTTGAAGAAAAAAGTATTCATTGGTAAGAAAAGTT
* ********** *
8151 CTATTTATAGTCTCT-TGTTCCTTTAAAAGCCTNNNNNNNNNNTTTAAATGGTTTTATAATCTGA
191 C-ATTTATAGTCTCTCT-TTCCTTCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCA
* * *
8215 TAATTGATTTTAACTTCAATTTTTTTTACATTATCAATTAAAATAGATTATAATTGAATGTCTAC
254 TAATTGATTTTAACTTCAATTTTTTTAACATTATCAATTAAAACAGATTATAATTAAATGTCTA-
* *
8280 CTTGAA-AAACGTGAAGAAAAACA
318 CATCAAGAAACGTGAAGAAAAACA
* * *
8303 TATTCATTGCAAGAAAAATTCATTTATAGTCTCTCATTCTTTCAAAAGCCTTATTACCTACTTTA
1 CATTCATTGCAAGAAAAGTCCATTTATAGTCTCTCATTCTTTCAAAAGCCTTATTACC-ACTTTA
* *
8368 AATAGTTTTATTACCTCAAAATTGATTTTATGTTCAATTTCTTTTACATTTTTAGTTAAAACATA
65 AATAGTTTTATTACCTCAAAATTAATTTTATGTTCAATTTCTTTTACATTTTTAGTTAAAACAAA
* * * *
8433 CTATAATTGAAGGTCTACCTTGAGAAACTTGAAGAAAACAA-CATTTATTGGCAAGAAAAGTTCA
130 CTATAATTGAACGTCTACCTT-AGAAACTTGAAGAAAA-AAGTATTCATTGGTAAGAAAAGTTCA
**********
8497 TTTATAGTCTCTCTTTCCTTCAAAAGCCTTATTACTTGCTTNNNNNNNNNNTATAATCTCATAAT
193 TTTATAGTCTCTCTTTCCTTCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAAT
***
8562 TGATTTTAACTTCAATTTTTTTAACATTATTGGTTAAAACAGATTATAATTAAATGTCTACATCA
258 TGATTTTAACTTCAATTTTTTTAACATTATCAATTAAAACAGATTATAATTAAATGTCTACATCA
8627 AGAAACGTGAAGAAAAACA
323 AGAAACGTGAAGAAAAACA
* *
8646 CATCCATTGACAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTACCA-TTGT
1 CATTCATTG-CAAGAAAAGTCCATTTATAGTCTCTCATTCTTTCAAAAGCCTTATTACCACTT-T
* * * *
8710 AAATAGTTTTATTATCTCAAAATCAATTTTATGTTCAATTTCTTTTATATTTTTAGTTAAAACAG
64 AAATAGTTTTATTACCTCAAAATTAATTTTATGTTCAATTTCTTTTACATTTTTAGTTAAAACAA
*
8775 ACTATAATTGAATC-TCTACCTTAGGAAA-TATGAAGAAAAAAGTATTCATTGGTAAGAAAAGTC
129 ACTATAATTGAA-CGTCTACCTTA-GAAACT-TGAAGAAAAAAGTATTCATTGGTAAGAAAAGTT
* * *
8838 CATTCATAGTCTCCCATTCCTTCAAAAGCCTTATTACT
191 CATTTATAGTCTCTCTTTCCTTCAAAAGCCTTATTACT
8876 NNNNNNNNNN
Statistics
Matches: 493, Mismatches: 66, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
342 19 0.04
343 416 0.84
344 58 0.12
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.38
Consensus pattern (341 bp):
CATTCATTGCAAGAAAAGTCCATTTATAGTCTCTCATTCTTTCAAAAGCCTTATTACCACTTTAA
ATAGTTTTATTACCTCAAAATTAATTTTATGTTCAATTTCTTTTACATTTTTAGTTAAAACAAAC
TATAATTGAACGTCTACCTTAGAAACTTGAAGAAAAAAGTATTCATTGGTAAGAAAAGTTCATTT
ATAGTCTCTCTTTCCTTCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGA
TTTTAACTTCAATTTTTTTAACATTATCAATTAAAACAGATTATAATTAAATGTCTACATCAAGA
AACGTGAAGAAAAACA
Done.