Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403213.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_882.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.19, C:0.07, G:0.08, T:0.19

Warning! 483 characters in sequence are not A, C, G, or T


Found at i:884 original size:38 final size:38

Alignment explanation


    Indices: 829--910  Score: 119
    Period size: 38  Copynumber: 2.1  Consensus size: 38

        819 NNNNNNNNNN

                                         *         
        829 AGAGAAAGCTTTAATTCCTAAGACCATACGAAACTATTT
          1 AGAG-AAGCTTTAATTCCTAAGACCATACAAAACTATTT

                       *           **             
        868 AGAGAAGCTTTTATTCCTAAGACTTTACAAAACTATTT
          1 AGAGAAGCTTTAATTCCTAAGACCATACAAAACTATTT

                 
        906 AGAGA
          1 AGAGA

        911 TTTGGAAGGA


Statistics
Matches: 39,  Mismatches: 4, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  38   35  0.90
  39    4  0.10

ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30


Consensus pattern (38 bp):   
AGAGAAGCTTTAATTCCTAAGACCATACAAAACTATTT
Done.