Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403214.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_883.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4397
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.23

Warning! 1732 characters in sequence are not A, C, G, or T


Found at i:3938 original size:171 final size:171

Alignment explanation


    Indices: 3641--4013  Score: 452
    Period size: 171  Copynumber: 2.2  Consensus size: 171

       3631 NNNNNNNNNN

                    *                                            **        * 
       3641 AAAATCAACTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAGGGAATGAGTTA
          1 AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAGTGA

                                                      *  *   *    *          
       3706 CCATAAATGGACATTTCTTGCCAATGAATTGTTTTGTCTTCATGTTTCTTAAGATAAACATTCAT
         66 CCATAAATGGACATTTCTTGCCAATGAATTGTTTTGTCTTCACGTATCTCAAGACAAACATTCA-

                     *      *                           
       3771 ATAT-TA-TCTGTTTTGATGAAAAATGTAAAAAAATTCA-ATAT
        130 AT-TCTAGTATGTTTTAATGAAAAATGTAAAAAAATTCAGAT-T

                         *            *                                      
       3812 AAAATCAATTATGCGATT-TAAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGAAT-AGAT
          1 AAAATCAATTATGAGATTAT-AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAG-T

               *  *       *                       *    *            *        
       3875 GACTATGAATGGACTTTTCTTGCCAATGAA-TGCTTTTTTCTTTACGTATCTCAAGGCAAACATT
         64 GACCATAAATGGACATTTCTTGCCAATGAATTG-TTTTGTCTTCACGTATCTCAAGACAAACATT

                                            *     *  *  
       3939 CAATTCTAGTATGTTTTAATGAAAAATGTAAAGAAATTGAGCTT
        128 CAATTCTAGTATGTTTTAATGAAAAATGTAAAAAAATTCAGATT

                          *                
       3983 AAAATCAATTATGAAATTATAAAACCATTTA
          1 AAAATCAATTATGAGATTATAAAACCATTTA

       4014 GAACAAGAAA


Statistics
Matches: 171,  Mismatches: 24, Indels: 14
        0.82            0.11        0.07

Matches are distributed among these distances:
 169    1  0.01
 170    9  0.05
 171  159  0.93
 172    2  0.01

ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35


Consensus pattern (171 bp):   
AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAGTGA
CCATAAATGGACATTTCTTGCCAATGAATTGTTTTGTCTTCACGTATCTCAAGACAAACATTCAA
TTCTAGTATGTTTTAATGAAAAATGTAAAAAAATTCAGATT
Done.