genome.fa.s5966.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403219.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_889.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41755

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969--2069	171	6.5	171	72	6	646	39	12	11	33	1.79
4487--4748	132	2.0	132	82	3	321	35	14	14	36	1.86
4605--6180	170	9.2	171	74	5	1132	37	12	12	33	1.82
4603--5758	513	2.3	513	79	3	1211	38	12	13	34	1.82
7752--8265	170	3.0	170	76	6	430	40	11	11	34	1.78
10542--10856	169	1.9	170	83	2	418	35	10	15	38	1.82
11281--13383	171	12.3	171	75	3	1400	37	10	13	34	1.80
12717--12756	21	1.9	21	84	0	53	30	12	10	47	1.74
14495--14838	172	2.0	170	81	6	399	40	13	11	34	1.81
16173--17095	170	5.5	166	73	9	614	36	12	14	34	1.83
19015--19999	170	5.8	170	76	4	757	36	12	13	33	1.83
20324--20923	172	3.5	170	81	2	506	38	13	13	34	1.83
20424--20867	172	2.6	172	84	1	525	39	12	13	34	1.82
20101--20917	170	4.8	170	76	4	585	38	12	13	33	1.82
21466--22120	339	2.0	329	83	3	762	38	11	14	34	1.82
22359--22677	172	1.9	161	79	9	345	37	10	14	35	1.79
21466--23832	343	6.9	338	75	6	1453	37	11	13	34	1.80
21466--23832	171	13.9	170	76	4	1736	37	11	13	34	1.80
25938--27078	512	2.2	513	79	3	1168	36	12	14	33	1.83
25432--29121	171	21.7	165	70	8	1285	35	11	13	33	1.81
28798--29110	167	1.9	168	84	2	423	35	12	14	37	1.84
29359--31031	171	9.8	170	75	6	976	36	11	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31527--31840	171	1.8	170	84	4	427	38	10	14	36	1.80
31527--31962	170	2.6	173	78	4	438	36	10	13	37	1.79
34227--37831	171	21.0	170	72	6	2114	36	12	12	34	1.81
34227--37831	341	10.5	340	73	7	1891	36	12	12	34	1.81
37526--38120	303	2.0	303	79	5	664	35	10	13	37	1.80
37209--38406	646	1.9	646	79	4	1369	37	12	13	35	1.82
38083--38526	171	2.6	164	78	9	369	35	11	12	35	1.80
38703--39832	171	6.7	161	74	12	637	35	12	15	33	1.84
38892--39569	341	2.0	333	80	6	742	36	12	15	33	1.84
39933--41749	171	10.6	171	73	4	1120	35	13	11	36	1.80
39933--40788	343	2.5	339	78	6	841	35	14	11	36	1.82

Tables:   1

The End!