Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403232.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_902.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8464
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.24

Warning! 3291 characters in sequence are not A, C, G, or T


Found at i:696 original size:172 final size:168

Alignment explanation


    Indices: 204--706  Score: 477
    Period size: 172  Copynumber: 2.9  Consensus size: 168

        194 NNNNNNNNNN

                        *                               *       *            
        204 ATGATTTTATAATCTCATAATTGATTTTAATTTAGATTTTTTAAAATTTTTTCTTAAAACAGATT
          1 ATGATTTTATAACCTCATAATTGATTTTAATTTAGATTTTTTAATATTTTTTATTAAAACAGATT

                  *     *        *              *       *          **        
        269 ATAATTAAATGTTTTCCTCGATAAACATGAAGAAAAAATATCCAATGGCAAGAAAACTCATTTTA
         66 ATAATTGAATGTATT-CTCGAGAAACATGAAGAAAAGATATCCATTGGCAAGAAAGTTCA-TTTA

                                  *                 
        334 TAGTCACCCATACCTTCAAAAGATTTATTACTCGCTTTAA
        129 TAGTCACCCATACCTTCAAAAGCTTTATTACTCGCTTTAA

                        *              **********      *                     
        374 ATGATTTTATAAGCTCATAATTGATTNNNNNNNNNNTTTTTTTTATATTTTTTATTAAAACAGAT
          1 ATGATTTTATAACCTCATAATTGATT-TTAATTTAGATTTTTTAATATTTTTTATTAAAACAGAT

                                                             *          *   *
        439 TATAATTGAATGTATGTCTCGAGAAACATGAAGAAAAAGATATCCATTGACAAGAAAAGTCCATN
         65 TATAATTGAATGTAT-TCTCGAGAAACATGAAG-AAAAGATATCCATTGGCAAG-AAAGTTCATT

            *********                                 
        504 NNNNNNNNNCCATACCTTCAAAAGCTTTATTACTCGCTTTAA
        127 TATAGTCACCCATACCTTCAAAAGCTTTATTACTCGCTTTAA

                           *                                              *  
        546 ATGATTTTATAACCTGATAATTGATTTTAATTTAGATTCTTTTACATA-TTTTTATTAAAACTGA
          1 ATGATTTTATAACCTCATAATTGATTTTAATTTAGATT-TTTTA-ATATTTTTTATTAAAACAGA

                       *  * *   *     ***                      *             
        610 TTATAATTGAACGTCTACATTGAGAATTGTGAAGAGAAAGATATCCATTGGTAAGCAAAGTTCAT
         64 TTATAATTGAATGTATTC-TCGAGAAACATGAAGA-AAAGATATCCATTGGCAAG-AAAGTTCAT

                          *           *     
        675 TTATAGTCACCCATGCCTTCAAAAGCCTTATT
        126 TTATAGTCACCCATACCTTCAAAAGCTTTATT

        707 NNNNNNNNNN


Statistics
Matches: 254,  Mismatches: 71, Indels: 14
        0.75            0.21        0.04

Matches are distributed among these distances:
 170   25  0.10
 171   57  0.22
 172  164  0.65
 173    8  0.03

ACGTcount: A:0.36, C:0.13, G:0.10, T:0.37


Consensus pattern (168 bp):   
ATGATTTTATAACCTCATAATTGATTTTAATTTAGATTTTTTAATATTTTTTATTAAAACAGATT
ATAATTGAATGTATTCTCGAGAAACATGAAGAAAAGATATCCATTGGCAAGAAAGTTCATTTATA
GTCACCCATACCTTCAAAAGCTTTATTACTCGCTTTAA
Done.