Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403239.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_909.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5724
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.19

Warning! 2800 characters in sequence are not A, C, G, or T


Found at i:590 original size:21 final size:21

Alignment explanation


    Indices: 566--606  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        556 TCAATTTTGA

                                  
        566 GATT-ATAAAGCTATTTAAAGT
          1 GATTAATAAAGCT-TTTAAAGT

                     *          
        587 GATTAATAAGGCTTTTAAAG
          1 GATTAATAAAGCTTTTAAAG

        607 GTATGGGTGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   11  0.61
  22    7  0.39

ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37


Consensus pattern (21 bp):   
GATTAATAAAGCTTTTAAAGT
Done.