Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403243.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_913.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.23

Warning! 397 characters in sequence are not A, C, G, or T


Found at i:978 original size:172 final size:170

Alignment explanation


    Indices: 465--1003  Score: 483
    Period size: 172  Copynumber: 3.1  Consensus size: 170

        455 NNNNNNNNNN

                                                              *    *      *  
        465 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTCAAA-GAATGGGAGATTATAAACGG
          1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT-AAAGGAATGAGAGACTATAAATGG

                        *                               *     *              
        529 ACTTTTCTTGCAAATGAATGCTTTTTTCTTCACGTTTCTCAAGGGAGACACTCAATTATAATCTA
         65 ACTTTTCTTGCACATGAATGC-TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTA

                            *             *             
        594 ATTTAACCAAAAATGTGCAAAGAATTCAAAGTAATAA-CAACTT
        129 ATTTAACCAAAAATGTACAAAGAATTCAAATTAA-AATCAA-TT

             *       **  *         *                  *      *            *  
        637 TTAGATTATGGAATCATTTAAAGTGAGTAATAAGGCTTTTAAGGGAATGCGAGACTATAAATTGA
          1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATAAATGGA

                    * *                     ***********   *            *   **
        702 CTTTTCTTACTCATGAATGCTTTTGTCTTCACCNNNNNNNNNNTAGCCATTCAATTATAGTCTGT
         66 CTTTTCTTGCACATGAATGCTTTT-TCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTAA

                 **          *   *  *    *   *        
        767 TTTAATGAAAAA-GTAAAAAAAAAATCAATTTACAATCAATT
        130 TTTAACCAAAAATGT-ACAAAGAATTCAAATTAAAATCAATT

                      *     *                      *                         
        808 ATGAGATTATGAAACCCTTTAAAGCGAGTAATAAGGCTTGTAAAGGAATGAGAGACTATAAATGG
          1 -TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATAAATGG

             *         *    *             * *      **                 *   *  
        873 AATTTTCTTGCCCATGGATGCTTCTTTCTTGAGGTTTCTTGAGGTAGACATTCAATTAGAATATA
         65 ACTTTTCTTGCACATGAATGCTT-TTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTA

                                                        
        938 ATTTAA-CAAAAATTGTACAAAGAATTCAAATTAAAATCAATTT
        129 ATTTAACCAAAAA-TGTACAAAGAATTCAAATTAAAATCAA-TT

                         *         
        981 TGAGATTATAAAATCATTTAAAG
          1 TGAGATTATAAAACCATTTAAAG

       1004 ANNNNNNNNN


Statistics
Matches: 278,  Mismatches: 80, Indels: 18
        0.74            0.21        0.05

Matches are distributed among these distances:
 171   17  0.06
 172  255  0.92
 173    6  0.02

ACGTcount: A:0.38, C:0.12, G:0.15, T:0.33


Consensus pattern (170 bp):   
TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATAAATGGA
CTTTTCTTGCACATGAATGCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTAAT
TTAACCAAAAATGTACAAAGAATTCAAATTAAAATCAATT
Done.