Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403244.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_914.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.21

Warning! 385 characters in sequence are not A, C, G, or T


Found at i:202 original size:25 final size:25

Alignment explanation


    Indices: 150--202  Score: 63
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        140 ATTGAAATAA

                     *             * 
        150 TTAATTAAATAAATAAAATCTAATT
          1 TTAATTAAAAAAATAAAATCTAAAT

                                *     
        175 TTAA-TAAAAAAATAAATATTTAAAT
          1 TTAATTAAAAAAATAAA-ATCTAAAT

               
        200 TTA
          1 TTA

        203 TATTTTCAGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  24   11  0.46
  25   13  0.54

ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40


Consensus pattern (25 bp):   
TTAATTAAAAAAATAAAATCTAAAT
Done.