Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10737078
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 75620 characters in sequence are not A, C, G, or T
File 22 of 22
Found at i:10220776 original size:30 final size:30
Alignment explanation
Indices: 10220742--10220802 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
10220732 ACTGATGTGA
*
10220742 GATCCATAACATTTTACCTCACTTAATTGT
1 GATCCATAACATTTTACCTCACTCAATTGT
* * *
10220772 GATCCATGATATTTTATCTCACTCAATTGT
1 GATCCATAACATTTTACCTCACTCAATTGT
10220802 G
1 G
10220803 TAATACCCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (30 bp):
GATCCATAACATTTTACCTCACTCAATTGT
Found at i:10233338 original size:2 final size:2
Alignment explanation
Indices: 10233331--10233366 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
10233321 TCTTTTCGCT
* *
10233331 GA GA GA GA GA GA GA GA AA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10233367 TGAAGAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10234343 original size:10 final size:10
Alignment explanation
Indices: 10234328--10234353 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10234318 ATTTGAACTA
10234328 TTTTTTTTAT
1 TTTTTTTTAT
10234338 TTTTTTTTAT
1 TTTTTTTTAT
10234348 TTTTTT
1 TTTTTT
10234354 CGGTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:10238264 original size:210 final size:211
Alignment explanation
Indices: 10237865--10238271 Score: 608
Period size: 210 Copynumber: 1.9 Consensus size: 211
10237855 TTTTCTCTCT
* * * *
10237865 TGGGGGACGTTAATGTAAGAACTTATTTTTTTGCTGGAAGTCTTCTTTTCCAGGATGAATGCCGG
1 TGGGGGACGTTAATGTAAGAACTTATTCTTATGCTGAAAGTCTTCTTTTCCAGGACGAATGCCGG
10237930 AGGCAAATGCTACTTGAACACTTTGGAGAGTCTTTCGACAGAAAAGACTGTAAACATGGTTCAAA
66 AGGCAAATGCTACTTGAACACTTTGGAGAGTCTTTCGACAGAAAAGACTGTAAACATGGTTCAAA
10237995 TCCTTGTGATAATTGTCTCAAGACTTCCTAATCAGCATAGACATGTTTGTACACATTGCAACTAA
131 TCCTTGTGATAATTGTCTCAAGACTTCCTAATCAGCATAGACATGTTTGTACACATTGCAACTAA
10238060 GCCTGGGGGTAAGGGG
196 GCCTGGGGGTAAGGGG
10238076 TGGGGGA-GTT-ATGTAAGAACTTATTGCTTATGCTGAAAGTCTTC-TTTCCAGGACGAATGCCG
1 TGGGGGACGTTAATGTAAGAACTTATT-CTTATGCTGAAAGTCTTCTTTTCCAGGACGAATGCCG
* * * * *
10238138 GGGGCAAAT-CTTACTTGAACACTTTGGAGAGTCTTTTGACAGAAAAAGCCTGTAAATATTGTTC
65 GAGGCAAATGC-TACTTGAACACTTTGGAGAGTCTTTCGACAG-AAAAGACTGTAAACATGGTTC
* * * **
10238202 AAATCCTTGTGATAATTGTCTGAGGACTTCCTAATGAGCATATG-CATGTTTGTGTACATTGCAA
128 AAATCCTTGTGATAATTGTCTCAAGACTTCCTAATCAGCATA-GACATGTTTGTACACATTGCAA
*
10238266 GTAAGC
192 CTAAGC
10238272 TATATATTGA
Statistics
Matches: 177, Mismatches: 15, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
208 1 0.01
209 70 0.40
210 98 0.55
211 8 0.05
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (211 bp):
TGGGGGACGTTAATGTAAGAACTTATTCTTATGCTGAAAGTCTTCTTTTCCAGGACGAATGCCGG
AGGCAAATGCTACTTGAACACTTTGGAGAGTCTTTCGACAGAAAAGACTGTAAACATGGTTCAAA
TCCTTGTGATAATTGTCTCAAGACTTCCTAATCAGCATAGACATGTTTGTACACATTGCAACTAA
GCCTGGGGGTAAGGGG
Found at i:10238759 original size:37 final size:38
Alignment explanation
Indices: 10238718--10238794 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 38
10238708 TCAATTTGCC
10238718 AACCCTTTGTGAATCACATTGCCTTT-ACTATTGATCA
1 AACCCTTTGTGAATCACATTGCCTTTGACTATTGATCA
10238755 AACCCTTTGTGAATCACATTGCCTTTGACTATTGATCA
1 AACCCTTTGTGAATCACATTGCCTTTGACTATTGATCA
10238793 AA
1 AA
10238795 AATAAATCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
37 26 0.67
38 13 0.33
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (38 bp):
AACCCTTTGTGAATCACATTGCCTTTGACTATTGATCA
Found at i:10238975 original size:22 final size:21
Alignment explanation
Indices: 10238948--10238993 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
10238938 CAAGACATCT
10238948 AAAAA-TAAATATTTAAATTATA
1 AAAAATTAAA-ATTTAAA-TATA
*
10238970 AAAAATTAAAATTTTAATATA
1 AAAAATTAAAATTTAAATATA
10238991 AAA
1 AAA
10238994 TATATAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 11 0.50
23 4 0.18
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAATTAAAATTTAAATATA
Found at i:10243157 original size:3 final size:3
Alignment explanation
Indices: 10243149--10243178 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
10243139 CCTCAACCAA
*
10243149 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10243179 TGTACTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10260020 original size:2 final size:2
Alignment explanation
Indices: 10260013--10260037 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10260003 AAATTTAGCT
10260013 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10260038 TTTACAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10274770 original size:3 final size:3
Alignment explanation
Indices: 10274762--10274792 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10274752 AATTCAAAGT
10274762 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10274793 CTAAGTCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10288409 original size:26 final size:26
Alignment explanation
Indices: 10288380--10288429 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10288370 ACTTGAAATC
*
10288380 TATGACATTTTATCTCATTTAATTTT
1 TATGACATTTTATCTCATCTAATTTT
*
10288406 TATGATATTTTATCTCATCTAATT
1 TATGACATTTTATCTCATCTAATT
10288430 ATACAATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56
Consensus pattern (26 bp):
TATGACATTTTATCTCATCTAATTTT
Found at i:10294558 original size:2 final size:2
Alignment explanation
Indices: 10294551--10294581 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
10294541 AATGAACAAC
*
10294551 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10294582 GATTTAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:10295253 original size:3 final size:3
Alignment explanation
Indices: 10295245--10295274 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
10295235 TCTATATGTA
*
10295245 CAG CAG CAG CAG CAG CAG CAG CAG AAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
10295275 AAGAAGGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.30, G:0.33, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:10300688 original size:15 final size:15
Alignment explanation
Indices: 10300658--10300722 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
10300648 CGTTTGGTAC
*
10300658 ATTACAATGCAATGTG
1 ATTACAA-GTAATGTG
*
10300674 ATTACAGGTAATGTG
1 ATTACAAGTAATGTG
*
10300689 ATTGCAAGTAATGTG
1 ATTACAAGTAATGTG
* * *
10300704 ATTGCAAGCAATATG
1 ATTACAAGTAATGTG
10300719 ATTA
1 ATTA
10300723 TAGGGAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 36 0.86
16 6 0.14
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (15 bp):
ATTACAAGTAATGTG
Found at i:10300950 original size:15 final size:15
Alignment explanation
Indices: 10300929--10301346 Score: 133
Period size: 15 Copynumber: 25.9 Consensus size: 15
10300919 TTTTAATATC
10300929 ATATATTTTATTTTT
1 ATATATTTTATTTTT
*
10300944 ATTTATTATTATAATATTT
1 ATATATT-TTAT--T-TTT
10300963 -TATATTTTATTTTT
1 ATATATTTTATTTTT
*
10300977 A-ATATATTTATATTT
1 ATATAT-TTTATTTTT
*
10300992 ATAT-TATTAATTTTT
1 ATATAT-TTTATTTTT
* *
10301007 ATATAATATCATTTCTT
1 ATAT-ATTTTATTT-TT
* * *
10301024 AAATATATTTTTAATGTC
1 --ATATA-TTTTATTTTT
10301042 ATATATTTTATTTTT
1 ATATATTTTATTTTT
*
10301057 ATTTATTATTATAATATTT
1 ATATATT-TTAT--T-TTT
10301076 -TATATTTTATTTTT
1 ATATATTTTATTTTT
10301090 AATATATTTATATTTTT
1 -ATATATTT-TATTTTT
*
10301107 AT-TA-TTAATTTTT
1 ATATATTTTATTTTT
* *
10301120 ATATAATATCATTTCTT
1 ATAT-ATTTTATTT-TT
* * *
10301137 AAATATATTTTTAATGTC
1 --ATATA-TTTTATTTTT
10301155 ATATATTTTATTTTT
1 ATATATTTTATTTTT
* *
10301170 ATTTATTATAATAATATTT
1 ATATATT-T--T-ATTTTT
10301189 -TATA-TTTATTTTT
1 ATATATTTTATTTTT
*
10301202 A-ATATATTTATATTT
1 ATATAT-TTTATTTTT
*
10301217 ATAT-TATTAATTTTT
1 ATATAT-TTTATTTTT
* *
10301232 ATATAATATCATATTTTAA
1 ATAT-AT-T-TTATTTT-T
**
10301251 ATATATTTTAATGTCAT
1 ATATATTTT-AT-TTTT
*
10301268 ATTTATTTTTATTTATT
1 ATATA-TTTTATTT-TT
10301285 ATTATAATTTTATATATTT
1 A-TAT-ATTTTAT-T-TTT
*
10301304 -TAT-TTTCATTTTT
1 ATATATTTTATTTTT
*
10301317 AATATATTTT-TATATT
1 -ATATATTTTAT-TTTT
10301333 ATATATTTTATTTT
1 ATATATTTTATTTT
10301347 AATTTGTTTT
Statistics
Matches: 301, Mismatches: 50, Indels: 104
0.66 0.11 0.23
Matches are distributed among these distances:
13 19 0.06
14 15 0.05
15 101 0.34
16 52 0.17
17 38 0.13
18 40 0.13
19 35 0.12
20 1 0.00
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (15 bp):
ATATATTTTATTTTT
Found at i:10301035 original size:113 final size:113
Alignment explanation
Indices: 10300915--10301309 Score: 696
Period size: 113 Copynumber: 3.5 Consensus size: 113
10300905 ATATAATATC
*
10300915 ATATTTTTAATATCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAAT
1 ATATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAAT
10300980 ATATTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAAT
66 ATATTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAAT
10301028 ATATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAAT
1 ATATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAAT
*
10301093 ATATTTATATTTTTATTATTAATTTTTATATAATATCATTTCTTAAAT
66 ATATTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAAT
*
10301141 ATATTTTTAATGTCATATATTTTATTTTTATTTATTATAATAATATTTTATA-TTTATTTTTAAT
1 ATATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAAT
10301205 ATATTTATATTTATATTATTAATTTTTATATAATATCATATT-TTAAAT
66 ATATTTATATTTATATTATTAATTTTTATATAATATCAT-TTCTTAAAT
10301253 ATA-TTTTAATGTC--ATA-TTTATTTTTATTTATTATTATAAT-TTTATATATTTTATTTT
1 ATATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATATTT-TATATTTTATTTT
10301310 CATTTTTAAT
Statistics
Matches: 274, Mismatches: 5, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
107 3 0.01
108 27 0.10
109 11 0.04
111 10 0.04
112 59 0.22
113 164 0.60
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (113 bp):
ATATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTTAAT
ATATTTATATTTATATTATTAATTTTTATATAATATCATTTCTTAAAT
Found at i:10301058 original size:6 final size:6
Alignment explanation
Indices: 10301047--10301121 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
10301037 ATGTCATATA
* * * *
10301047 TTTTAT TTTTAT TTATTAT TATAAT ATTTTAT ATTTTAT TTTTA- ATATAT
1 TTTTAT TTTTAT TT-TTAT TTTTAT -TTTTAT -TTTTAT TTTTAT TTTTAT
* *
10301097 TTATAT TTTTAT TATTAAT TTTTAT
1 TTTTAT TTTTAT T-TTTAT TTTTAT
10301122 ATAATATCAT
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 3 0.05
6 31 0.56
7 21 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:10301234 original size:21 final size:21
Alignment explanation
Indices: 10300937--10301235 Score: 138
Period size: 21 Copynumber: 13.5 Consensus size: 21
10300927 TCATATATTT
10300937 TATTTT-TATTTA-TTATTATAA
1 TATTTTATATTTATTTA-T-TAA
10300958 TATTTTATATTTTATTT-TTAA
1 TATTTTATA-TTTATTTATTAA
10300979 TATATTTATATTTATATTATTAA
1 TAT-TTTATATTTAT-TTATTAA
*
10301002 T-TTTTATATAATATCATTTCTTAAA
1 TATTTTATAT--T-T-ATTTATT-AA
* * * *
10301027 TATATTTTTAATGTCATATATT-T
1 TAT-TTTAT-AT-TTATTTATTAA
10301050 TATTTT-TATTTA-TTATTATAA
1 TATTTTATATTTATTTA-T-TAA
10301071 TATTTTATATTTTATTT-TTAA
1 TATTTTATA-TTTATTTATTAA
*
10301092 TATATTTATATTTTTATTATTAA
1 TAT-TTTATATTTAT-TTATTAA
*
10301115 T-TTTTATATAATATCATTTCTTAAA
1 TATTTTATAT--T-T-ATTTATT-AA
* * * *
10301140 TATATTTTTAATGTCATATATT-T
1 TAT-TTTAT-AT-TTATTTATTAA
*
10301163 TATTTT-TATTTATTATAATAA
1 TATTTTATATTTATT-TATTAA
10301184 TATTTTATATTTATTT-TTAA
1 TATTTTATATTTATTTATTAA
10301204 TATATTTATATTTATATTATTAA
1 TAT-TTTATATTTAT-TTATTAA
10301227 T-TTTTATAT
1 TATTTTATAT
10301236 AATATCATAT
Statistics
Matches: 217, Mismatches: 24, Indels: 74
0.69 0.08 0.23
Matches are distributed among these distances:
18 2 0.01
19 6 0.03
20 14 0.06
21 74 0.34
22 41 0.19
23 31 0.14
24 14 0.06
25 19 0.09
26 2 0.01
27 10 0.05
28 4 0.02
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (21 bp):
TATTTTATATTTATTTATTAA
Found at i:10301303 original size:32 final size:29
Alignment explanation
Indices: 10301266--10301346 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 29
10301256 TTTTAATGTC
*
10301266 ATATTTATTTTTATTTATTATTATAATTTTAT
1 ATATTTATTTTTATTT-TTAATAT-ATTTT-T
*
10301298 ATATTTTATTTTCATTTTTAATATATTTTT
1 ATA-TTTATTTTTATTTTTAATATATTTTT
10301328 ATATTATATATTTTATTTT
1 ATATT-TAT-TTTTATTTT
10301347 AATTTGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 2 0.05
30 7 0.16
31 13 0.30
32 9 0.21
33 12 0.28
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (29 bp):
ATATTTATTTTTATTTTTAATATATTTTT
Found at i:10301341 original size:65 final size:64
Alignment explanation
Indices: 10301203--10301345 Score: 148
Period size: 65 Copynumber: 2.2 Consensus size: 64
10301193 TTTATTTTTA
* *
10301203 ATATATTTATATTTATATTATTAATTTTTATATAATATCATATTTTAAATATATTTTAATGTCAT
1 ATATATTTTTATTTATATTATTAATTTTTATATAATATCATATTTTAAATATATTTTAATAT-AT
* ** ** * *
10301268 ATTTATTTTTATTTATTATTA-TAATTTTATATATTTTATTTTCATTTTTAATATATTTTTATAT
1 ATATATTTTTATTTA-TATTATTAATTTT-TATATAATATCAT-ATTTTAAATATATTTTAATAT
10301332 -T
63 AT
10301333 ATATA-TTTTATTT
1 ATATATTTTTATTT
10301346 TAATTTGTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
64 8 0.12
65 25 0.38
66 14 0.22
67 18 0.28
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.64
Consensus pattern (64 bp):
ATATATTTTTATTTATATTATTAATTTTTATATAATATCATATTTTAAATATATTTTAATATAT
Found at i:10301387 original size:51 final size:47
Alignment explanation
Indices: 10301331--10301450 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 47
10301321 TATTTTTATA
10301331 TTATATATTTTATTTTAATTTGTT-TTACCTATATTATATAAATGTTAATTT
1 TTATATATTTTATTTTAATTT-TTATT-CCTATATTATAT--AT-TTAATTT
* *
10301382 TTATATTTGATTTTATTTTAATTTTTATTCTTATATTATATATTTTATTT
1 TTATA--T-ATTTTATTTTAATTTTTATTCCTATATTATATATTTAATTT
*
10301432 TAATAT-TTTTATTTTAATT
1 TTATATATTTTATTTTAATT
10301451 ATAATATTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
46 13 0.21
48 1 0.02
50 10 0.16
51 7 0.11
53 14 0.23
54 17 0.27
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (47 bp):
TTATATATTTTATTTTAATTTTTATTCCTATATTATATATTTAATTT
Found at i:10301397 original size:12 final size:12
Alignment explanation
Indices: 10301380--10301447 Score: 59
Period size: 14 Copynumber: 5.4 Consensus size: 12
10301370 AAATGTTAAT
*
10301380 TTTTATATTTGA
1 TTTTATATTTTA
*
10301392 TTTTAT-TTTAA
1 TTTTATATTTTA
10301403 TTTT-TATTCTTA
1 TTTTATATT-TTA
10301415 TATTATATATTTTA
1 T-TT-TATATTTTA
10301429 TTTTAATATTTTTA
1 TTTT-ATA-TTTTA
10301443 TTTTA
1 TTTTA
10301448 ATTATAATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
10 1 0.02
11 10 0.21
12 10 0.21
13 8 0.17
14 14 0.30
15 4 0.09
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (12 bp):
TTTTATATTTTA
Found at i:10301427 original size:20 final size:19
Alignment explanation
Indices: 10301383--10301461 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 19
10301373 TGTTAATTTT
* *
10301383 TATATTTGATTTTATTTTA
1 TATATTTTATTTTATATTA
10301402 -AT-TTTTATTCTTATATTA
1 TATATTTTATT-TTATATTA
10301420 TATATTTTATTTTAATATT-
1 TATATTTTATTTT-ATATTA
* *
10301439 TTTATTTTAATTATAATATTA
1 TATATTTT-ATT-TTATATTA
10301460 TA
1 TA
10301462 AAATATTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
17 6 0.12
18 9 0.19
19 11 0.23
20 20 0.42
21 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (19 bp):
TATATTTTATTTTATATTA
Found at i:10301429 original size:32 final size:33
Alignment explanation
Indices: 10301391--10301458 Score: 97
Period size: 32 Copynumber: 2.1 Consensus size: 33
10301381 TTTATATTTG
10301391 ATTTTATTTT-A-ATTTTTATTCTTATATTAT-AT
1 ATTTTATTTTAATATTTTTATT-TTA-ATTATAAT
10301423 ATTTTATTTTAATATTTTTATTTTAATTATAAT
1 ATTTTATTTTAATATTTTTATTTTAATTATAAT
10301456 ATT
1 ATT
10301459 ATAAAATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
32 15 0.45
33 9 0.27
34 9 0.27
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (33 bp):
ATTTTATTTTAATATTTTTATTTTAATTATAAT
Found at i:10301446 original size:6 final size:6
Alignment explanation
Indices: 10301378--10301446 Score: 50
Period size: 6 Copynumber: 10.8 Consensus size: 6
10301368 ATAAATGTTA
* * * *
10301378 ATTTTT ATATTTG A-TTTT ATTTTA ATTTTT ATTCTT ATATTAT ATATTTT
1 ATTTTT AT-TTTT ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT AT-TTTT
10301428 ATTTTAAT ATTTTT ATTTT
1 ATTTT--T ATTTTT ATTTT
10301447 AATTATAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 4 0.08
6 26 0.52
7 14 0.28
8 6 0.12
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (6 bp):
ATTTTT
Found at i:10307641 original size:2 final size:2
Alignment explanation
Indices: 10307634--10307683 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
10307624 GAGCAGCCAC
*
10307634 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10307676 AT AT AT AT
1 AT AT AT AT
10307684 TGCTCCACTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10312159 original size:7 final size:7
Alignment explanation
Indices: 10312149--10312173 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10312139 TGGGTTTTGG
10312149 GGAGGTT
1 GGAGGTT
10312156 GGAGGTT
1 GGAGGTT
10312163 GGAGGTT
1 GGAGGTT
10312170 GGAG
1 GGAG
10312174 CTACTAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24
Consensus pattern (7 bp):
GGAGGTT
Found at i:10324818 original size:2 final size:2
Alignment explanation
Indices: 10324811--10324836 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10324801 AAATAAATAA
10324811 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10324837 GTTAACATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10332322 original size:30 final size:30
Alignment explanation
Indices: 10332278--10332378 Score: 121
Period size: 30 Copynumber: 3.3 Consensus size: 30
10332268 GTTTGGTACT
* * * *
10332278 TTATAATATAATGTGATTACAGGTAATATAA
1 TTATAA-AAAATGTGATTGCAAGTAATGTAA
* *
10332309 TTATAAAAAATGTGATTGTAAGAAATGTAA
1 TTATAAAAAATGTGATTGCAAGTAATGTAA
* *
10332339 TTATAAAAAATATGATTGCAAGTAATGTGA
1 TTATAAAAAATGTGATTGCAAGTAATGTAA
10332369 TTATAAAAAA
1 TTATAAAAAA
10332379 AATAATATTA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
30 54 0.90
31 6 0.10
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.35
Consensus pattern (30 bp):
TTATAAAAAATGTGATTGCAAGTAATGTAA
Found at i:10332336 original size:15 final size:15
Alignment explanation
Indices: 10332316--10332370 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
10332306 TAATTATAAA
10332316 AAATGTGATTGTAAG
1 AAATGTGATTGTAAG
* * *
10332331 AAATGTAATTATAAA
1 AAATGTGATTGTAAG
* *
10332346 AAATATGATTGCAAG
1 AAATGTGATTGTAAG
*
10332361 TAATGTGATT
1 AAATGTGATT
10332371 ATAAAAAAAA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.45, C:0.02, G:0.18, T:0.35
Consensus pattern (15 bp):
AAATGTGATTGTAAG
Found at i:10332476 original size:96 final size:96
Alignment explanation
Indices: 10332362--10332546 Score: 226
Period size: 96 Copynumber: 1.9 Consensus size: 96
10332352 GATTGCAAGT
* * * * *
10332362 AATGTGATTATAAAAAAAATAATATTATAACGTTTGATATGTAAATAAAATAATAATTAAAATAT
1 AATGTGATTACAAAAAAAATAACATTACAACGTTTGATATGCAAATAAAATAATAATTAAAATAC
*
10332427 AGAAAAAATAACATTACAGCGTTTAATTTAA
66 AAAAAAAATAACATTACAGCGTTTAATTTAA
* * * * ** * *
10332458 AATGTGATTGCAAGAAAAATAACATTACAATGTTTGGTATGCAGGTAAAATAATGATTAAAATGC
1 AATGTGATTACAAAAAAAATAACATTACAACGTTTGATATGCAAATAAAATAATAATTAAAATAC
* *
10332523 AAAAAAAATAATATTGCAGCGTTT
66 AAAAAAAATAACATTACAGCGTTT
10332547 GGTTTACAAG
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (96 bp):
AATGTGATTACAAAAAAAATAACATTACAACGTTTGATATGCAAATAAAATAATAATTAAAATAC
AAAAAAAATAACATTACAGCGTTTAATTTAA
Found at i:10332701 original size:6 final size:6
Alignment explanation
Indices: 10332690--10332764 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
10332680 ATGTCATATA
* * * *
10332690 TTTTAT TTTTAT TTGTTAT TATAAT TTTATAT ATTTTAT TTTTA- ATATAT
1 TTTTAT TTTTAT TT-TTAT TTTTAT TTT-TAT -TTTTAT TTTTAT TTTTAT
* *
10332740 TTATAT TTTTAT TATTAAT TTTTAT
1 TTTTAT TTTTAT T-TTTAT TTTTAT
10332765 ATAATATCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
5 3 0.06
6 33 0.61
7 15 0.28
8 3 0.06
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:10332837 original size:50 final size:49
Alignment explanation
Indices: 10332782--10332950 Score: 146
Period size: 49 Copynumber: 3.2 Consensus size: 49
10332772 CATCTCTTAA
10332782 ATATATTTTTAATGTCATAATATTTATTTTTTATTTGTTATTATAATTTT
1 ATATATTTTTAATGTCATAATATTT-TTTTTTATTTGTTATTATAATTTT
* * *
10332832 ATATA-TTTTATTTTTATATATATATTTTTATTATTAATTT-TTATATAATATCATCTCTT
1 ATATATTTTTA-ATGT-CATA-ATATTTTT-TT-TT-ATTTGTTAT-T-ATA--AT-T-TT
10332891 AAATATATTTTTAATGTCAT-ATATTTTATTTTTATTTGTTATTATAATTTT
1 --ATATATTTTTAATGTCATAATATTTT-TTTTTATTTGTTATTATAATTTT
10332942 ATATATTTT
1 ATATATTTT
10332951 ATTTTTAATA
Statistics
Matches: 96, Mismatches: 6, Indels: 35
0.70 0.04 0.26
Matches are distributed among these distances:
49 14 0.15
50 7 0.07
51 7 0.07
52 9 0.09
53 8 0.08
54 5 0.05
55 6 0.06
56 5 0.05
57 8 0.08
58 10 0.10
59 3 0.03
60 2 0.02
61 7 0.07
62 5 0.05
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (49 bp):
ATATATTTTTAATGTCATAATATTTTTTTTTATTTGTTATTATAATTTT
Found at i:10332925 original size:6 final size:6
Alignment explanation
Indices: 10332914--10332988 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
10332904 ATGTCATATA
* * * *
10332914 TTTTAT TTTTAT TTGTTAT TATAAT TTTATAT ATTTTAT TTTTA- ATATAT
1 TTTTAT TTTTAT TT-TTAT TTTTAT TTT-TAT -TTTTAT TTTTAT TTTTAT
* *
10332964 TTATAT TTTTAT TATTAAT TTTTAT
1 TTTTAT TTTTAT T-TTTAT TTTTAT
10332989 ATAATATCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
5 3 0.06
6 33 0.61
7 15 0.28
8 3 0.06
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:10332940 original size:24 final size:23
Alignment explanation
Indices: 10332909--10332990 Score: 89
Period size: 23 Copynumber: 3.5 Consensus size: 23
10332899 TTTTAATGTC
10332909 ATATATTT-TATTTTTATTTGTTA
1 ATATATTTATATTTTTATTT-TTA
*
10332932 TTATAATTTTATATATTTTATTTTTA
1 ATAT-A-TTTATAT-TTTTATTTTTA
*
10332958 ATATATTTATATTTTTATTATTA
1 ATATATTTATATTTTTATTTTTA
10332981 AT-T-TTTATAT
1 ATATATTTATAT
10332991 AATATCATCT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
21 7 0.13
22 1 0.02
23 15 0.29
24 8 0.15
25 4 0.08
26 9 0.17
27 8 0.15
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.68
Consensus pattern (23 bp):
ATATATTTATATTTTTATTTTTA
Found at i:10333022 original size:224 final size:224
Alignment explanation
Indices: 10332621--10333082 Score: 833
Period size: 224 Copynumber: 2.1 Consensus size: 224
10332611 ATAAGTTTAA
*
10332621 TATATTTATATTTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCA
1 TATATATATA-TTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCA
10332686 TATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATTTTTAATATATTTATATTTTTA
65 TATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATTTTTAATATATTTATATTTTTA
10332751 TTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCATAATATTTATTTTTTAT
130 TTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCAT-ATATTTA-TTTTTAT
* *
10332816 TTGTTATTATAAT-TTTATATAT-TTTATTTT
193 TTATTATTATAATAATTATATATATTTATTTT
10332846 TATATATATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCAT
1 TATATATATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCAT
10332911 ATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATTTTTAATATATTTATATTTTTAT
66 ATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATTTTTAATATATTTATATTTTTAT
10332976 TATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCATATATTTATTTTTATTTA
131 TATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCATATATTTATTTTTATTTA
*
10333041 TTATTATAATAATTATATTTATTTATTTT
196 TTATTATAATAATTATATATATTTATTTT
10333070 T-TA-ATATATTTTT
1 TATATATATATTTTT
10333083 TATATTATAC
Statistics
Matches: 231, Mismatches: 4, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
222 29 0.13
223 16 0.07
224 177 0.77
225 9 0.04
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (224 bp):
TATATATATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCAT
ATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATTTTTAATATATTTATATTTTTAT
TATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAATGTCATATATTTATTTTTATTTA
TTATTATAATAATTATATATATTTATTTT
Found at i:10333088 original size:25 final size:25
Alignment explanation
Indices: 10333022--10333088 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
10333012 TTTTAATGTC
10333022 ATATATTTATTTTTATTTATTATTATA
1 ATATA-TT-TTTTTATTTATTATTATA
* *
10333049 ATA-ATTATATTTATTTATT-TTTTA
1 ATATATT-TTTTTATTTATTATTATA
10333073 ATATATTTTTTATATT
1 ATATATTTTTT-TATT
10333089 ATACATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 10 0.29
25 21 0.60
26 1 0.03
27 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
ATATATTTTTTTATTTATTATTATA
Found at i:10333124 original size:113 final size:113
Alignment explanation
Indices: 10332616--10333080 Score: 814
Period size: 113 Copynumber: 4.1 Consensus size: 113
10332606 AAAATATAAG
10332616 TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAA
1 TTTAATATATTTATA-TTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAA
10332681 TGTCATATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATT
65 TGTCATATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATT
10332730 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
1 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
10332795 GTCATA-ATATTTATTTTTTATTTGTTATTATAATTTTATATATTTTATT
66 GTCATATAT-TTTA-TTTTTATTTGTTATTATAATTTTATATATTTTATT
10332844 TTT-ATATA--TATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
1 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
10332906 GTCATATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATT
66 GTCATATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATT
10332954 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
1 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
* * *
10333019 GTCATATA-TTTATTTTTATTTATTATTATAATAATTATATTTATTTATTT
66 GTCATATATTTTATTTTTATTTGTTATTATAAT-TTTATATAT-TTTA-TT
10333069 TTTAATATATTT
1 TTTAATATATTT
10333081 TTTATATTAT
Statistics
Matches: 339, Mismatches: 3, Indels: 17
0.94 0.01 0.05
Matches are distributed among these distances:
110 38 0.11
111 69 0.20
112 27 0.08
113 134 0.40
114 57 0.17
115 14 0.04
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (113 bp):
TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAAT
GTCATATATTTTATTTTTATTTGTTATTATAATTTTATATATTTTATT
Found at i:10333138 original size:67 final size:67
Alignment explanation
Indices: 10333005--10333153 Score: 149
Period size: 67 Copynumber: 2.2 Consensus size: 67
10332995 TCATCTCTTA
* * * * ** *
10333005 AATATATTTTTAATGTCATATATTTATTTTTATTTATTATTATAATAATTATATTTATTTATTTT
1 AATATATTTTTTATATCATACATTTATTTTAATTTATTATTATAATAATTATATAAATTTAATTT
10333070 TT
66 TT
* * *
10333072 AATATATTTTTTATATTATACATTTATTTTAATTTGTT-TTACTTAT-ATTATATAAATTTTAAT
1 AATATATTTTTTATATCATACATTTATTTTAATTTATTATTA-TAATAATTATATAAA-TTTAAT
10333135 TTTT
64 TTTT
* *
10333139 TATATTTTATTTTAT
1 AATATATT-TTTTAT
10333154 TTTAATTTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
66 11 0.16
67 50 0.75
68 6 0.09
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (67 bp):
AATATATTTTTTATATCATACATTTATTTTAATTTATTATTATAATAATTATATAAATTTAATTT
TT
Found at i:10333141 original size:24 final size:25
Alignment explanation
Indices: 10333114--10333188 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 25
10333104 TTTGTTTTAC
10333114 TTATATTATA-TAAATTTTAATTTT
1 TTATATTATATTAAATTTTAATTTT
* **
10333138 TTATATTTTATTTTATTTTAATTTT
1 TTATATTATATTAAATTTTAATTTT
* *
10333163 TGATCTATATATTATATATTTTAATT
1 TTATAT-TATATTA-A-ATTTTAATT
10333189 AATATTTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 9 0.23
25 16 0.41
26 5 0.13
28 9 0.23
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (25 bp):
TTATATTATATTAAATTTTAATTTT
Found at i:10333174 original size:55 final size:54
Alignment explanation
Indices: 10333077--10333188 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
10333067 TTTTTAATAT
*
10333077 ATTTTTTATATTATACATTTATTTTAATTTGTTTTACTTATATTATATAAATTTTA
1 ATTTTTTATATTATACATTTATTTTAATTTGTTATACTTATATTATAT--ATTTTA
* *
10333133 ATTTTTTATATTTTA-TTTTATTTTAATTT-TTGAT-CTATATATTATATATTTTA
1 ATTTTTTATATTATACATTTATTTTAATTTGTT-ATACT-TATATTATATATTTTA
10333186 ATT
1 ATT
10333189 AATATTTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
53 9 0.18
54 4 0.08
55 24 0.47
56 14 0.27
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (54 bp):
ATTTTTTATATTATACATTTATTTTAATTTGTTATACTTATATTATATATTTTA
Found at i:10333245 original size:29 final size:31
Alignment explanation
Indices: 10333189--10333267 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 31
10333179 TATTTTAATT
* * * *
10333189 AATATTTTTTATTTAAATTATAACAATATAA
1 AATATTTTTTAATAAAATAATAACAATAAAA
10333220 AATA-TTTTTAATAAAATAATAA-AATAAAA
1 AATATTTTTTAATAAAATAATAACAATAAAA
* *
10333249 AAAATTATTTTTA-AAAATA
1 AATATT-TTTTAATAAAATA
10333268 TTACAGAGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 9 0.22
30 22 0.55
31 9 0.22
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (31 bp):
AATATTTTTTAATAAAATAATAACAATAAAA
Found at i:10344527 original size:2 final size:2
Alignment explanation
Indices: 10344491--10344542 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
10344481 AAAGAAACAT
* * * * *
10344491 GA GA GA GG GA GA CA GA -A CA GA GA AA GA GA GC GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10344532 GA GA GA GA GA G
1 GA GA GA GA GA G
10344543 TAAGCAAAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.48, C:0.06, G:0.46, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10345068 original size:54 final size:54
Alignment explanation
Indices: 10344976--10345088 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
10344966 TGAAAATTAC
* *
10344976 TGAATTTACTAAGCAATTGGAAATTCCTGTTTGCCAAAAACATCATATGTAACA
1 TGAATTTACTAAGCAATGGGAAATTCCTGTTTGCCAAAAACATCACATGTAACA
* *
10345030 TGAATTTACTAAGCAATGGGAAATTCCT-TGTTGTCAAAAACTTCACATGTAACA
1 TGAATTTACTAAGCAATGGGAAATTCCTGT-TTGCCAAAAACATCACATGTAACA
10345084 TGAAT
1 TGAAT
10345089 AGAAGAGCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 1 0.02
54 53 0.98
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (54 bp):
TGAATTTACTAAGCAATGGGAAATTCCTGTTTGCCAAAAACATCACATGTAACA
Found at i:10345296 original size:19 final size:21
Alignment explanation
Indices: 10345274--10345314 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
10345264 AAAATATTTT
10345274 TTATTA-A-TTTAAAAAATTA
1 TTATTATATTTTAAAAAATTA
10345293 TTATTATATTTTTAAAAAATTA
1 TTATTATA-TTTTAAAAAATTA
10345315 AAAAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
22 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTATTATATTTTAAAAAATTA
Found at i:10345299 original size:22 final size:21
Alignment explanation
Indices: 10345262--10345314 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
10345252 ATTAAAAAAA
*
10345262 TTAAAATATT-TTTTAT-TAAT
1 TTAAAAAATTATTTTATAT-AT
*
10345282 TTAAAAAATTATTATTATATTT
1 TTAAAAAATTATT-TTATATAT
10345304 TTAAAAAATTA
1 TTAAAAAATTA
10345315 AAAAAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.32
21 2 0.07
22 16 0.57
23 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAAAAAATTATTTTATATAT
Found at i:10345596 original size:18 final size:19
Alignment explanation
Indices: 10345565--10345601 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
10345555 ATGTCTAATG
10345565 AAAAATATTTTTTT-AAAT
1 AAAAATATTTTTTTGAAAT
10345583 AAAAA-ATTTATTTTGAAAT
1 AAAAATATTT-TTTTGAAAT
10345602 TTAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 9 0.53
19 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
AAAAATATTTTTTTGAAAT
Found at i:10353162 original size:23 final size:23
Alignment explanation
Indices: 10353125--10353172 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
10353115 AATATACTAA
*
10353125 TTCATATATCATTATCATTTATT
1 TTCATACATCATTATCATTTATT
*
10353148 TTCATACATCGTTATCATTTATT
1 TTCATACATCATTATCATTTATT
10353171 TT
1 TT
10353173 ATCATAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.02, T:0.56
Consensus pattern (23 bp):
TTCATACATCATTATCATTTATT
Found at i:10360957 original size:14 final size:15
Alignment explanation
Indices: 10360938--10360972 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
10360928 CATTTCCTAC
10360938 TGAAAAAT-AACAGT
1 TGAAAAATAAACAGT
10360952 TG-AAAATAAACAGT
1 TGAAAAATAAACAGT
10360966 TGAAAAA
1 TGAAAAA
10360973 GACCCCTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 10 0.53
15 4 0.21
ACGTcount: A:0.60, C:0.06, G:0.14, T:0.20
Consensus pattern (15 bp):
TGAAAAATAAACAGT
Found at i:10373596 original size:2 final size:2
Alignment explanation
Indices: 10373589--10373621 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
10373579 TTAAAATCTC
10373589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10373622 AATAACTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10384734 original size:2 final size:2
Alignment explanation
Indices: 10384727--10384752 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10384717 CATAGTAGGT
10384727 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
10384753 ACTCACTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:10393576 original size:19 final size:19
Alignment explanation
Indices: 10393540--10393577 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10393530 AAAAAGATAA
*
10393540 TTTTTATGATTTTTTTTAT
1 TTTTTATGATTTTATTTAT
10393559 TTTTTAT-ATTTATATTTAT
1 TTTTTATGATTT-TATTTAT
10393578 AAAAAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TTTTTATGATTTTATTTAT
Found at i:10393836 original size:7 final size:7
Alignment explanation
Indices: 10393819--10393853 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
10393809 CTCTCACTCT
*
10393819 CACCTCT
1 CACCTCC
10393826 CACCTCC
1 CACCTCC
10393833 CACCTCC
1 CACCTCC
10393840 CACCTCC
1 CACCTCC
10393847 CACCTCC
1 CACCTCC
10393854 GCCCCTCCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.14, C:0.69, G:0.00, T:0.17
Consensus pattern (7 bp):
CACCTCC
Found at i:10393838 original size:14 final size:14
Alignment explanation
Indices: 10393808--10393852 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
10393798 TCTCCTTGCT
*
10393808 CCTCTCA-CTCTCA
1 CCTCTCACCTCCCA
10393821 CCTCTCACCTCCCA
1 CCTCTCACCTCCCA
*
10393835 CCTCCCACCTCCCA
1 CCTCTCACCTCCCA
10393849 CCTC
1 CCTC
10393853 CGCCCCTCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 7 0.24
14 22 0.76
ACGTcount: A:0.13, C:0.64, G:0.00, T:0.22
Consensus pattern (14 bp):
CCTCTCACCTCCCA
Found at i:10411910 original size:25 final size:25
Alignment explanation
Indices: 10411882--10411932 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
10411872 TTTTTTACAA
10411882 TTTT-AAAAATCTAATT-AATTTAATT
1 TTTTAAAAAAT-TAATTGAA-TTAATT
10411907 TTTTAAAAAATTAATTGAATTAATT
1 TTTTAAAAAATTAATTGAATTAATT
10411932 T
1 T
10411933 AATTAATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TTTTAAAAAATTAATTGAATTAATT
Found at i:10412086 original size:21 final size:20
Alignment explanation
Indices: 10412032--10412098 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
10412022 TTTCAGAATA
10412032 ATTATTAATTTTATATATTA-T
1 ATTA-TAATTTTATAT-TTAGT
10412053 ATT-TAACTATTTATATTTATGT
1 ATTATAA-T-TTTATATTTA-GT
10412075 ATTATAATTTTATATTTAGT
1 ATTATAATTTTATATTTAGT
10412095 ATTA
1 ATTA
10412099 ATTTGAAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
19 3 0.07
20 10 0.24
21 20 0.49
22 5 0.12
23 3 0.07
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (20 bp):
ATTATAATTTTATATTTAGT
Found at i:10412532 original size:2 final size:2
Alignment explanation
Indices: 10412525--10412552 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10412515 ACAGGATGTA
10412525 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10412553 CATAATCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10420860 original size:26 final size:26
Alignment explanation
Indices: 10420822--10420888 Score: 125
Period size: 26 Copynumber: 2.5 Consensus size: 26
10420812 AAAGTCCAAA
10420822 CCCAGGCAAGGCAAGAAGACGGGACAG
1 CCCAGG-AAGGCAAGAAGACGGGACAG
10420849 CCCAGGAAGGCAAGAAGACGGGACAG
1 CCCAGGAAGGCAAGAAGACGGGACAG
10420875 CCCAGGAAGGCAAG
1 CCCAGGAAGGCAAG
10420889 GCCAGGCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 34 0.85
27 6 0.15
ACGTcount: A:0.37, C:0.25, G:0.37, T:0.00
Consensus pattern (26 bp):
CCCAGGAAGGCAAGAAGACGGGACAG
Found at i:10444264 original size:25 final size:24
Alignment explanation
Indices: 10444211--10444266 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
10444201 CTTTTAATTT
* *
10444211 ATTAAATACGAGGAAAAATAAATA
1 ATTAAATACAAGGAAAAACAAATA
10444235 ATTAAATACAAGGAAAAACAAATA
1 ATTAAATACAAGGAAAAACAAATA
10444259 ATTTAAAT
1 A-TTAAAT
10444267 CACACGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 23 0.79
25 6 0.21
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.23
Consensus pattern (24 bp):
ATTAAATACAAGGAAAAACAAATA
Found at i:10450933 original size:2 final size:2
Alignment explanation
Indices: 10450926--10450950 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10450916 CTCTATGATC
10450926 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
10450951 ACGGAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10453804 original size:27 final size:25
Alignment explanation
Indices: 10453774--10453836 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 25
10453764 ATTACATGGC
*
10453774 ATGTTAAAAAAAATATTATTACACGCT
1 ATGTT-AAAAAAATA-GATTACACGCT
*
10453801 ATG-TACAAAAATAGATTACACGCT
1 ATGTTAAAAAAATAGATTACACGCT
*
10453825 ATGATTTAAAAA
1 ATG-TTAAAAAA
10453837 TGTTATTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
24 13 0.43
25 8 0.27
26 6 0.20
27 3 0.10
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.30
Consensus pattern (25 bp):
ATGTTAAAAAAATAGATTACACGCT
Found at i:10453907 original size:33 final size:33
Alignment explanation
Indices: 10453855--10453922 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
10453845 TACGTAATGG
* * *
10453855 AAAAAAATATTGTTATTACATGCCATATTGAAA
1 AAAAAAAAATTATTATTACACGCCATATTGAAA
* * *
10453888 AAAAAAAAATTATTGTTACACGTCATATTTAAA
1 AAAAAAAAATTATTATTACACGCCATATTGAAA
10453921 AA
1 AA
10453923 CATTTTATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.32
Consensus pattern (33 bp):
AAAAAAAAATTATTATTACACGCCATATTGAAA
Found at i:10469508 original size:282 final size:282
Alignment explanation
Indices: 10469001--10469562 Score: 921
Period size: 282 Copynumber: 2.0 Consensus size: 282
10468991 ATGGATACAA
*
10469001 ACAAATACATGTATGCCACAATGCAGACAGCCTTCCTCCAATAGCCAGAGGAAAAACTTAAAAGA
1 ACAAATACATGTATGCCACAATGCAGACAGCCTTCCTCCAATAGCCAAAGGAAAAACTTAAAAGA
* * * *
10469066 CAAGGTAGCACTGGTCAATATAGCTTATGATTATGTTATGTGCTAATGGAGAACATCTAGTTAGC
66 CAAGGCAGCACTCGTAAATATAGCTTATGATTATGTTATGTGCTAATCGAGAACATCTAGTTAGC
* *
10469131 ACAAGACCGTCAATAAGCACTCAAATTCATCACCAGCAACTATAATGCACTGAGTAAACCTAAAA
131 ACAAGACCATCAATAAGCACTCAAATTCATCACCAGCAACTACAATGCACTGAGTAAACCTAAAA
* * * *
10469196 CCATTAATATCTGAATAAAGATAGGACTTAAAGC-TAACAGTTAGCCTACCACATATATTGATTA
196 CCATTAATATCTGAATAAAAATAAGACTT-AAGCAAAACAGTTAACCTACCACATATATTGATTA
10469260 AAAGGAAAAACCCTAGAATCAAT
260 AAAGGAAAAACCCTAGAATCAAT
* * *
10469283 ACAAATACATGTATGCCACAATGCAGATAGCCTTCCTCCAATAGCCAAAGGAAGAACTTGAAAGA
1 ACAAATACATGTATGCCACAATGCAGACAGCCTTCCTCCAATAGCCAAAGGAAAAACTTAAAAGA
*
10469348 CAAGGCAGCACTCGTAAATATAGCTTATGATTATGTTATGTGCTAATCGAGAGCATCTAGTTAGC
66 CAAGGCAGCACTCGTAAATATAGCTTATGATTATGTTATGTGCTAATCGAGAACATCTAGTTAGC
*
10469413 ACAAGACCATCAATAAGCACTCAAATTTATCACCAGCAACTACAATGCACT-AGGTAAACCTAAA
131 ACAAGACCATCAATAAGCACTCAAATTCATCACCAGCAACTACAATGCACTGA-GTAAACCTAAA
*
10469477 ACCATTAATATTTGAATAAAAATAAGACTTAAGCAAAACAGTTAACCTACCACATATATTGATTA
195 ACCATTAATATCTGAATAAAAATAAGACTTAAGCAAAACAGTTAACCTACCACATATATTGATTA
* *
10469542 AAAGGAGAAAGCCTAGAATCA
260 AAAGGAAAAACCCTAGAATCA
10469563 CATGTAACAT
Statistics
Matches: 259, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
281 5 0.02
282 254 0.98
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (282 bp):
ACAAATACATGTATGCCACAATGCAGACAGCCTTCCTCCAATAGCCAAAGGAAAAACTTAAAAGA
CAAGGCAGCACTCGTAAATATAGCTTATGATTATGTTATGTGCTAATCGAGAACATCTAGTTAGC
ACAAGACCATCAATAAGCACTCAAATTCATCACCAGCAACTACAATGCACTGAGTAAACCTAAAA
CCATTAATATCTGAATAAAAATAAGACTTAAGCAAAACAGTTAACCTACCACATATATTGATTAA
AAGGAAAAACCCTAGAATCAAT
Found at i:10473665 original size:2 final size:2
Alignment explanation
Indices: 10473656--10473695 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
10473646 GAAAAAAAAA
10473656 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10473696 CCCATACCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10504527 original size:2 final size:2
Alignment explanation
Indices: 10504520--10504545 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10504510 CTATCATTAT
10504520 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
10504546 ACAAATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10508820 original size:12 final size:12
Alignment explanation
Indices: 10508802--10508833 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10508792 AGATGATGAG
10508802 GAAGAAGACTCA
1 GAAGAAGACTCA
*
10508814 GATGAAGACTCA
1 GAAGAAGACTCA
10508826 GAAGAAGA
1 GAAGAAGA
10508834 TGAAGGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.28, T:0.09
Consensus pattern (12 bp):
GAAGAAGACTCA
Found at i:10518263 original size:3 final size:3
Alignment explanation
Indices: 10518255--10518279 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10518245 AATTCGTATA
10518255 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
10518280 GTGTAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10526163 original size:2 final size:2
Alignment explanation
Indices: 10526156--10526182 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10526146 CTTTGAGTGT
10526156 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10526183 GCAGAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10527267 original size:6 final size:6
Alignment explanation
Indices: 10527252--10527308 Score: 78
Period size: 6 Copynumber: 9.5 Consensus size: 6
10527242 CTGGTGGCAC
* * * *
10527252 CACCGG CACTGG CACTGG CACTGG CACCGG CACCGG CACCGG CACAGG
1 CACCGG CACCGG CACCGG CACCGG CACCGG CACCGG CACCGG CACCGG
10527300 CACCGG CAC
1 CACCGG CAC
10527309 ACCACCATGA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.19, C:0.44, G:0.32, T:0.05
Consensus pattern (6 bp):
CACCGG
Found at i:10527273 original size:12 final size:12
Alignment explanation
Indices: 10527252--10527308 Score: 87
Period size: 12 Copynumber: 4.8 Consensus size: 12
10527242 CTGGTGGCAC
10527252 CACCGGCACTGG
1 CACCGGCACTGG
*
10527264 CACTGGCACTGG
1 CACCGGCACTGG
*
10527276 CACCGGCACCGG
1 CACCGGCACTGG
*
10527288 CACCGGCACAGG
1 CACCGGCACTGG
10527300 CACCGGCAC
1 CACCGGCAC
10527309 ACCACCATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.19, C:0.44, G:0.32, T:0.05
Consensus pattern (12 bp):
CACCGGCACTGG
Found at i:10528505 original size:16 final size:17
Alignment explanation
Indices: 10528486--10528517 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10528476 ATATATTTTT
10528486 ATTTTA-AATTAATAAA
1 ATTTTATAATTAATAAA
10528502 ATTTTATAATTAATAA
1 ATTTTATAATTAATAA
10528518 TTAATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTTATAATTAATAAA
Found at i:10528734 original size:21 final size:21
Alignment explanation
Indices: 10528668--10528744 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
10528658 TATTAATTAT
* *
10528668 AAAAATTTATTTAATTTAAAATA
1 AAAAATTAATTTAA--TATAATA
*
10528691 AAAAATTAATTGAATATAATA
1 AAAAATTAATTTAATATAATA
* *
10528712 AAAAATTAATTTAATAT-TTT
1 AAAAATTAATTTAATATAATA
10528732 AAAAA-TAATTTAA
1 AAAAATTAATTTAA
10528745 AGTCTTTTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.17
20 6 0.12
21 22 0.46
23 12 0.25
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (21 bp):
AAAAATTAATTTAATATAATA
Found at i:10529208 original size:21 final size:20
Alignment explanation
Indices: 10529184--10529222 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10529174 AGATTATGAA
*
10529184 TTTTGATTTGTATTCTTTTTT
1 TTTTCATTTGTATT-TTTTTT
*
10529205 TTTTCATTTTTATTTTTT
1 TTTTCATTTGTATTTTTT
10529223 GATGATTCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTTCATTTGTATTTTTTTT
Found at i:10545180 original size:30 final size:30
Alignment explanation
Indices: 10545139--10545214 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 30
10545129 TTTTTAAACT
10545139 ATTTAAATAAATTTTT-TATTCTTT-TGTTA
1 ATTTAAATAAATTTTTATATT-TTTATGTTA
* *
10545168 GATTTAATTAAATTTTTATATTTTTATTTTA
1 -ATTTAAATAAATTTTTATATTTTTATGTTA
*
10545199 AATTAAATAAATTTTT
1 ATTTAAATAAATTTTT
10545215 GTGACTAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
30 32 0.80
31 8 0.20
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.61
Consensus pattern (30 bp):
ATTTAAATAAATTTTTATATTTTTATGTTA
Found at i:10550706 original size:12 final size:12
Alignment explanation
Indices: 10550686--10550724 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
10550676 GTAAATTTAA
*
10550686 CATGGTCATGGT
1 CATGCTCATGGT
*
10550698 CATGCTCATGCT
1 CATGCTCATGGT
10550710 CATGCTCATGG-
1 CATGCTCATGGT
10550721 CATG
1 CATG
10550725 GCAACACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.31
Consensus pattern (12 bp):
CATGCTCATGGT
Found at i:10558240 original size:17 final size:18
Alignment explanation
Indices: 10558213--10558252 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
10558203 ATTAAAGCAC
*
10558213 TAGATGAGAGGTAAGAAA
1 TAGATGAGAGGGAAGAAA
10558231 TAGA-GAGAGGGAAGAAA
1 TAGATGAGAGGGAAGAAA
10558248 TAGAT
1 TAGAT
10558253 ACACTTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15
Consensus pattern (18 bp):
TAGATGAGAGGGAAGAAA
Found at i:10570913 original size:20 final size:21
Alignment explanation
Indices: 10570884--10570929 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
10570874 AGCTTGACAA
* *
10570884 TTTTCGTTAAATCATTA-TCT
1 TTTTCATTAAACCATTACTCT
*
10570904 TTTTCATTAAACCCTTACTCT
1 TTTTCATTAAACCATTACTCT
10570925 TTTTC
1 TTTTC
10570930 TTGGTGTCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTTCATTAAACCATTACTCT
Found at i:10582828 original size:2 final size:2
Alignment explanation
Indices: 10582823--10582847 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10582813 CACACACATT
10582823 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10582848 GGTAATACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10605562 original size:89 final size:89
Alignment explanation
Indices: 10605411--10605588 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
10605401 GATTGATTCT
10605411 CTCATAACAGTTGAATTATAATGGTTGCAAAAGAAGAATACTTTGGATACATATGGTACATTGAT
1 CTCATAACAGTTGAATTATAATGGTTGCAAAAGAAGAATACTTTGGATACATATGGTACATTGAT
10605476 AATGGTTGCACAAACTATGAAAAG
66 AATGGTTGCACAAACTATGAAAAG
10605500 CTCATAACAGTTGAATTATAATGGTTGCAAAAGAAGAATACTTTGGATACATATGGTACATTGAT
1 CTCATAACAGTTGAATTATAATGGTTGCAAAAGAAGAATACTTTGGATACATATGGTACATTGAT
10605565 AATGGTTGCACAAACTATGAAAAG
66 AATGGTTGCACAAACTATGAAAAG
10605589 GGTAAAGGCT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.29
Consensus pattern (89 bp):
CTCATAACAGTTGAATTATAATGGTTGCAAAAGAAGAATACTTTGGATACATATGGTACATTGAT
AATGGTTGCACAAACTATGAAAAG
Found at i:10609494 original size:20 final size:21
Alignment explanation
Indices: 10609447--10609526 Score: 60
Period size: 20 Copynumber: 3.8 Consensus size: 21
10609437 AATTTAGTAT
10609447 AATTTATAAAAATTAATATTTA
1 AATTT-TAAAAATTAATATTTA
10609469 AA-TTTAAAAATTAA-A-TTA
1 AATTTTAAAAATTAATATTTA
** *
10609487 CAATTTTAATTA-TAAAATTTTA
1 -AATTTTAAAAATTAATA-TTTA
*
10609509 ATATTTTAATAATTAATA
1 A-ATTTTAAAAATTAATA
10609527 AAGAATAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
18 3 0.06
19 6 0.13
20 17 0.36
21 3 0.06
22 14 0.30
23 4 0.09
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTTTAAAAATTAATATTTA
Found at i:10609689 original size:20 final size:21
Alignment explanation
Indices: 10609664--10609704 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
10609654 TTAATAAATT
10609664 ATTAAAAAT-AAATATTATAA
1 ATTAAAAATCAAATATTATAA
10609684 ATTAAAAATCAAATATTATAA
1 ATTAAAAATCAAATATTATAA
10609705 CAAATGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTAAAAATCAAATATTATAA
Found at i:10610535 original size:21 final size:19
Alignment explanation
Indices: 10610511--10610566 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 19
10610501 TGGTACTCGA
*
10610511 AGGTTTTAAAAATGAACTTAG
1 AGGTTTTAAAAAT--ACTCAG
*
10610532 AGGTTTTGAAGAAATACTCGG
1 AGGTTTT-AA-AAATACTCAG
10610553 AGGTTTTAAAAATA
1 AGGTTTTAAAAATA
10610567 TTCCTATAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 18 0.58
22 2 0.06
23 4 0.13
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.32
Consensus pattern (19 bp):
AGGTTTTAAAAATACTCAG
Found at i:10611110 original size:44 final size:44
Alignment explanation
Indices: 10610991--10611114 Score: 119
Period size: 44 Copynumber: 2.8 Consensus size: 44
10610981 ATTGTTCCTA
* *
10610991 AAGGATATCAAGATTATAACCGGAGTATTTAGAAA-TCTTACTCG
1 AAGGATTTCAAGATTATAACCGGAGGATTT-GAAATTCTTACTCG
* * ** * *
10611035 GAGGATTTCAAGATTAT-GCTCAAAGGGTTTGAAATTGTTA-TCCG
1 AAGGATTTCAAGATTATAAC-CGGAGGATTTGAAATTCTTACT-CG
*
10611079 AAGGATTTCAATATTATAACCGGAGGATTTGAAATT
1 AAGGATTTCAAGATTATAACCGGAGGATTTGAAATT
10611115 ATCACCCAAA
Statistics
Matches: 62, Mismatches: 14, Indels: 8
0.74 0.17 0.10
Matches are distributed among these distances:
43 6 0.10
44 55 0.89
45 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (44 bp):
AAGGATTTCAAGATTATAACCGGAGGATTTGAAATTCTTACTCG
Found at i:10657844 original size:13 final size:13
Alignment explanation
Indices: 10657826--10657850 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10657816 CATTTCTTTT
10657826 GTGCATCTACTAG
1 GTGCATCTACTAG
10657839 GTGCATCTACTA
1 GTGCATCTACTA
10657851 AGATTGCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (13 bp):
GTGCATCTACTAG
Found at i:10671644 original size:35 final size:35
Alignment explanation
Indices: 10671591--10671663 Score: 83
Period size: 35 Copynumber: 2.1 Consensus size: 35
10671581 AACAACTTGT
* * * * *
10671591 ATTTTATAACAACGACTCACGCACTCTAACATTTG
1 ATTTAATAACAACAACTCACACACCCAAACATTTG
* *
10671626 ATTTAATAACCACAACTCATACACCCAAACATTTG
1 ATTTAATAACAACAACTCACACACCCAAACATTTG
10671661 ATT
1 ATT
10671664 CAAGTGTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.30
Consensus pattern (35 bp):
ATTTAATAACAACAACTCACACACCCAAACATTTG
Found at i:10683139 original size:16 final size:16
Alignment explanation
Indices: 10683127--10683158 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10683117 ATTAATAAAT
10683127 TATCGATTAAATAATA
1 TATCGATTAAATAATA
*
10683143 TATCGATTAATTAATA
1 TATCGATTAAATAATA
10683159 AATTTTCATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
TATCGATTAAATAATA
Found at i:10684885 original size:57 final size:55
Alignment explanation
Indices: 10684704--10684885 Score: 152
Period size: 57 Copynumber: 3.2 Consensus size: 55
10684694 ACGGTGAGGT
* * * *
10684704 AGAAATACCGCTGGCGTTTGGGTC-GAAGTACTTTATGTGCATTGCCATAGTGGGGC
1 AGAAATACCACTGGTG-TTGGGTCAG-AGTACTTTTTGTGCATTGCCTTAGTGGGGC
* ** **
10684760 AGAAATACCACTGGTGTATGGGTCAAAGTAC-CCTTGATGCATTGCCTGTAGTGAAGC
1 AGAAATACCACTGGTGT-TGGGTCAGAGTACTTTTTG-TGCATTGCCT-TAGTGGGGC
* * * * * *
10684817 GGATATGCCACTGGTGCTTGCGTCAGAGTACTTTTTGTGCATTGTCCTTAATGGGGT
1 AGAAATACCACTGGTG-TTGGGTCAGAGTACTTTTTGTGCATTG-CCTTAGTGGGGC
10684874 AGAAATACCACT
1 AGAAATACCACT
10684886 AATTGTCATG
Statistics
Matches: 96, Mismatches: 23, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
55 3 0.03
56 34 0.35
57 52 0.54
58 7 0.07
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (55 bp):
AGAAATACCACTGGTGTTGGGTCAGAGTACTTTTTGTGCATTGCCTTAGTGGGGC
Found at i:10686240 original size:14 final size:14
Alignment explanation
Indices: 10686192--10686242 Score: 68
Period size: 14 Copynumber: 3.5 Consensus size: 14
10686182 AAACAGAATA
10686192 AAAATA-AAAAAAT
1 AAAATATAAAAAAT
10686205 AAACATATAATAATAAT
1 AAA-ATATAA-AA-AAT
10686222 AAAATATAAAAAAT
1 AAAATATAAAAAAT
10686236 AAAATAT
1 AAAATAT
10686243 TATTTTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.09
14 13 0.38
15 4 0.12
16 8 0.24
17 6 0.18
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAATATAAAAAAT
Found at i:10686293 original size:29 final size:31
Alignment explanation
Indices: 10686220--10686294 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 31
10686210 TATAATAATA
* *
10686220 ATAAAATATAAAAAATAAAATATTATTTTAT
1 ATAAAATATTAAAAATAAAAAATTATTTTAT
* *
10686251 ATTAATTATT--AAATAAAAAATTATTTT-T
1 ATAAAATATTAAAAATAAAAAATTATTTTAT
10686279 A-AAAATATTAAAAATA
1 ATAAAATATTAAAAATA
10686295 TAGATAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
27 6 0.17
28 2 0.06
29 21 0.58
31 7 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (31 bp):
ATAAAATATTAAAAATAAAAAATTATTTTAT
Found at i:10688074 original size:2 final size:2
Alignment explanation
Indices: 10688067--10688097 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10688057 TATACGTGGC
10688067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10688098 CATCTTCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10688902 original size:30 final size:30
Alignment explanation
Indices: 10688868--10688927 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
10688858 ATTCAAAACG
10688868 TATGTTAATATCTTCAAAACCTTGGTGATA
1 TATGTTAATATCTTCAAAACCTTGGTGATA
10688898 TATGTTAATATCTTCAAAACCTTGGTGATA
1 TATGTTAATATCTTCAAAACCTTGGTGATA
10688928 AAGTATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (30 bp):
TATGTTAATATCTTCAAAACCTTGGTGATA
Found at i:10694924 original size:23 final size:24
Alignment explanation
Indices: 10694898--10694949 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
10694888 ACTTTTTACC
*
10694898 TACCAGAAATGGATGAATA-TTTT
1 TACCAGAAATGGATAAATACTTTT
*
10694921 TACCAGAAGTGGATAAATACTTTT
1 TACCAGAAATGGATAAATACTTTT
10694945 TACCA
1 TACCA
10694950 AGTGATTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (24 bp):
TACCAGAAATGGATAAATACTTTT
Found at i:10696073 original size:13 final size:13
Alignment explanation
Indices: 10696055--10696079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10696045 ACTGTTACTT
10696055 GAGATTTAAGCAG
1 GAGATTTAAGCAG
10696068 GAGATTTAAGCA
1 GAGATTTAAGCA
10696080 TGTAAAGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (13 bp):
GAGATTTAAGCAG
Found at i:10699785 original size:28 final size:28
Alignment explanation
Indices: 10699745--10699798 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
10699735 TTAAGGTGGC
*
10699745 GATGTGGGCAAATGCAGGATGACCATCT
1 GATGTGGGCAAATGCAAGATGACCATCT
10699773 GATGTGGGCAAATGCAAGATGACCAT
1 GATGTGGGCAAATGCAAGATGACCAT
10699799 GAGAACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (28 bp):
GATGTGGGCAAATGCAAGATGACCATCT
Found at i:10700885 original size:28 final size:28
Alignment explanation
Indices: 10700830--10700894 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
10700820 CATTAAAAAC
* *
10700830 GGATGGATACATTTAATCCATCAAAATT
1 GGATGAATACATTTAACCCATCAAAATT
* *
10700858 GGATTAATACATTTAACCCA-CTATAATT
1 GGATGAATACATTTAACCCATC-AAAATT
10700886 GGATGAATA
1 GGATGAATA
10700895 GTAAATAGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (28 bp):
GGATGAATACATTTAACCCATCAAAATT
Found at i:10700939 original size:15 final size:14
Alignment explanation
Indices: 10700905--10700939 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
10700895 GTAAATAGAT
10700905 ATAAAAAAATAAAA
1 ATAAAAAAATAAAA
10700919 ATTAAAAAAATAAATA
1 A-TAAAAAAATAAA-A
10700935 ATAAA
1 ATAAA
10700940 TGTGACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 16 0.84
16 2 0.11
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
ATAAAAAAATAAAA
Found at i:10708398 original size:43 final size:41
Alignment explanation
Indices: 10708351--10708491 Score: 99
Period size: 46 Copynumber: 3.1 Consensus size: 41
10708341 TCATTTCTTA
10708351 AATATATTTTTAATATCATATATTTATTTTTATTTATTATTAT
1 AATATATTTTTAATAT-ATATATTTATTTTTATTTATT-TTAT
* *
10708394 AATATTTATATTTTATTTTTAATATATTTATATTTTTATTATTAATTTTATAT
1 AATA--TAT-TTTTA-ATAT-ATATA-TT-TATTTTTA-T-TT-A-TTT-TAT
10708447 AATATCATTTCTTAA-ATATAT-TTTATTTTTATTTA-TTTAT
1 AATAT-ATTT-TTAATATATATATTTATTTTTATTTATTTTAT
10708487 AATAT
1 AATAT
10708492 TTTATATTTA
Statistics
Matches: 80, Mismatches: 5, Indels: 29
0.70 0.04 0.25
Matches are distributed among these distances:
40 8 0.10
41 2 0.03
43 5 0.06
44 2 0.03
45 4 0.05
46 13 0.16
47 9 0.11
48 2 0.03
49 12 0.15
50 2 0.03
51 5 0.06
52 7 0.09
53 9 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (41 bp):
AATATATTTTTAATATATATATTTATTTTTATTTATTTTAT
Found at i:10708408 original size:22 final size:22
Alignment explanation
Indices: 10708368--10708539 Score: 108
Period size: 23 Copynumber: 7.5 Consensus size: 22
10708358 TTTTAATATC
10708368 ATATATTTAT-TTTTATTTATTA
1 ATATATTTATATTTTA-TTATTA
*
10708390 TTATAATATTTATATTTTATTTTTA
1 --AT-ATATTTATATTTTATTATTA
10708415 ATATATTTATATTTTTATTATTA
1 ATATATTTATA-TTTTATTATTA
* * *
10708438 AT-T-TTATATAATATCATTTCTTAA
1 ATATATT-TAT-ATTTTA-TTATT-A
*
10708462 ATATATTT-TATTTTTATTTATTT
1 ATATATTTATA-TTTTA-TTATTA
*
10708485 ATAATATTT-TATATTTATTTTTA
1 AT-ATATTTATAT-TTTATTATTA
10708508 ATATATTTATA-TTTATATATTA
1 ATATATTTATATTTTAT-TATTA
10708530 AT-T-TTTATAT
1 ATATATTTATAT
10708540 AATATCATAT
Statistics
Matches: 121, Mismatches: 12, Indels: 33
0.73 0.07 0.20
Matches are distributed among these distances:
20 6 0.05
21 8 0.07
22 28 0.23
23 31 0.26
24 26 0.21
25 15 0.12
26 7 0.06
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (22 bp):
ATATATTTATATTTTATTATTA
Found at i:10708418 original size:14 final size:15
Alignment explanation
Indices: 10708368--10708617 Score: 97
Period size: 16 Copynumber: 15.9 Consensus size: 15
10708358 TTTTAATATC
10708368 ATATA-TTTATTTTT
1 ATATATTTTATTTTT
* *
10708382 ATTTATTATTATAATATT
1 ATATATT-TTAT--TTTT
10708400 -TATATTTTATTTTT
1 ATATATTTTATTTTT
10708414 AATATATTTATATTTTT
1 -ATATATTT-TATTTTT
*
10708431 AT-TA--TTAATTTT
1 ATATATTTTATTTTT
* *
10708443 ATATAATATCATTTCTT
1 ATAT-ATTTTATTT-TT
10708460 AAATATATTTTATTTTT
1 --ATATATTTTATTTTT
* *
10708477 ATTTATTTATAATATTT
1 ATATATTT-T-ATTTTT
10708494 -TATA-TTTATTTTT
1 ATATATTTTATTTTT
*
10708507 A-ATATATTTATATTT
1 ATATAT-TTTATTTTT
*
10708522 ATATA-TTAATTTTT
1 ATATATTTTATTTTT
* *
10708536 ATATAATATCATATTTTAA
1 ATAT-AT-T-TTATTTT-T
* * *
10708555 ATATATTTTTAATGTC
1 ATATA-TTTTATTTTT
10708571 ATATATTTTA-TTTT
1 ATATATTTTATTTTT
* *
10708585 ATTTTATTATTATAATTT
1 A-TATATT-TTAT-TTTT
10708603 ATTATATTTTATTTT
1 A-TATATTTTATTTT
10708618 CATTTCTTTA
Statistics
Matches: 177, Mismatches: 29, Indels: 58
0.67 0.11 0.22
Matches are distributed among these distances:
12 8 0.05
13 10 0.06
14 23 0.13
15 32 0.18
16 38 0.21
17 30 0.17
18 27 0.15
19 9 0.05
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
ATATATTTTATTTTT
Found at i:10708418 original size:63 final size:62
Alignment explanation
Indices: 10708305--10708657 Score: 177
Period size: 63 Copynumber: 5.7 Consensus size: 62
10708295 TAAGTTTAAC
* * *
10708305 ATATTTATATTTT-T-TATTA-TTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATAT
1 ATATTTAT-TTTTATATATTATTTAATATTTATAT-AT-TTATTT-TT--ATATATTTATAATAT
*
10708367 CAT
60 TAT
* * *
10708370 ATATTTATTTTTATTTATTATTATAATATTTATAT-TTTATTTTTAATATATTTATATTTTTAT
1 ATATTTATTTTTATATATTATT-TAATATTTATATATTTATTTTT-ATATATTTATAATATTAT
* * ** ** * *
10708433 -TATTAATTTTATATAATATCATTTCTTAAATATAT-TTTATTTTTATTTATTTATAATATTTT
1 ATATTTATTTT-TAT-ATATTATTTAATATTTATATATTTATTTTTATATATTTATAATATTAT
* * * *
10708495 ATATTTATTTTTA-ATA-TATTT-ATATTTATATATTAATTTTTATATA-ATATCATATTTT
1 ATATTTATTTTTATATATTATTTAATATTTATATATTTATTTTTATATATTTATAATATTAT
* * * * * *
10708553 AAATATATTTTTAATGTCATATATTT--TATTT-TAT-TTTATTATTATA-ATTTATTATATTTT
1 ATATTTATTTTT-ATAT-AT-TATTTAATATTTATATATTTATTTTTATATATTTATAATATTAT
10708613 AT-TTTCATTTCTTTAATATATT-TTT-ATA-TTATATTATTTTATTTT
1 ATATTT-A-TT-TTT-ATATATTATTTAATATTTATA-TA-TTTATTTT
10708658 AATTTGTTTT
Statistics
Matches: 229, Mismatches: 37, Indels: 46
0.73 0.12 0.15
Matches are distributed among these distances:
58 27 0.12
59 25 0.11
60 31 0.14
61 9 0.04
62 37 0.16
63 56 0.24
64 12 0.05
65 14 0.06
66 6 0.03
67 1 0.00
68 11 0.05
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (62 bp):
ATATTTATTTTTATATATTATTTAATATTTATATATTTATTTTTATATATTTATAATATTAT
Found at i:10708419 original size:47 final size:48
Alignment explanation
Indices: 10708368--10708529 Score: 180
Period size: 45 Copynumber: 3.5 Consensus size: 48
10708358 TTTTAATATC
10708368 ATATATTTATTTTTATTTATTATTATAATATTTATAT-TTTATTTTTA
1 ATATATTTATTTTTATTTATTATTATAATATTTATATATTTATTTTTA
* *
10708415 ATATATTTA-TATT-TTTATTA-T-TAAT-TTTATATAATATCATTTCTTAA
1 ATATATTTATTTTTATTTATTATTATAATATTTATAT-AT-TTATTT-TT-A
10708462 ATATATTTTATTTTTATTTA-T-TTATAATATTT-TATATTTATTTTTA
1 ATATA-TTTATTTTTATTTATTATTATAATATTTATATATTTATTTTTA
* *
10708508 ATATATTTATATTTATATATTA
1 ATATATTTATTTTTATTTATTA
10708530 ATTTTTATAT
Statistics
Matches: 96, Mismatches: 6, Indels: 26
0.75 0.05 0.20
Matches are distributed among these distances:
42 7 0.07
43 4 0.04
44 2 0.02
45 24 0.25
46 12 0.12
47 17 0.18
48 9 0.09
49 7 0.07
50 11 0.11
51 3 0.03
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (48 bp):
ATATATTTATTTTTATTTATTATTATAATATTTATATATTTATTTTTA
Found at i:10708552 original size:110 final size:110
Alignment explanation
Indices: 10708299--10708614 Score: 314
Period size: 110 Copynumber: 3.0 Consensus size: 110
10708289 AAAATATAAG
*
10708299 TTTAACATATTTATATTTTTTATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAA
1 TTTAATATATTTATA-TTTTTATTATTAA-TTTTATATAATATCATTTCTTAAATATATTTTTAA
* * *
10708364 TATCATATATTTATTTTTATTTATTATTATAATATTTATATTTTATT
64 TATCATATATTTATATATATTTATTATTATAATATTTATATTTTATA
10708411 TTTAATATATTTATATTTTTATTATTAATTTTATATAATATCATTTCTTAAATATA-TTTT-AT-
1 TTTAATATATTTATATTTTTATTATTAATTTTATATAATATCATTTCTTAAATATATTTTTAATA
* * *
10708473 T--TTTATTTAT-T-TA--TAATATT-TTATATTTAT-TTTTAATA
66 TCATATATTTATATATATTTATTATTATAATATTTATATTTT-ATA
*
10708511 TATT--TATATTTATA----TATTA--ATTTTTATATAATATCATATT-TTAAATATATTTTTAA
1 T-TTAATATATTTATATTTTTATTATTAATTTTATATAATATCAT-TTCTTAAATATATTTTTAA
* * *
10708567 TGTCATATATTT-TATTTTATTTTATTATTATAATTTATTATATTTTAT
64 TATCATATATTTATA-TATA-TTTATTATTATAATAT-TTATATTTTAT
10708615 TTTCATTTCT
Statistics
Matches: 177, Mismatches: 10, Indels: 41
0.78 0.04 0.18
Matches are distributed among these distances:
93 26 0.15
94 6 0.03
95 7 0.04
96 1 0.01
97 1 0.01
98 6 0.03
99 15 0.08
100 14 0.08
101 8 0.05
103 8 0.05
104 5 0.03
105 14 0.08
106 4 0.02
107 1 0.01
108 2 0.01
109 4 0.02
110 28 0.16
111 13 0.07
112 14 0.08
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (110 bp):
TTTAATATATTTATATTTTTATTATTAATTTTATATAATATCATTTCTTAAATATATTTTTAATA
TCATATATTTATATATATTTATTATTATAATATTTATATTTTATA
Found at i:10708558 original size:47 final size:46
Alignment explanation
Indices: 10708407--10708562 Score: 160
Period size: 47 Copynumber: 3.3 Consensus size: 46
10708397 ATTTATATTT
*
10708407 TATTTTTAATATATTTATATTTTTATTATTAA-TTTTATATAATATCA
1 TATTTTAAATATATTTATA-TTTTA-TATTAATTTTTATATAATATCA
* * * *
10708454 T-TTCTTAAATATATTT-TATTTT-TATTTATTTATAATATTTTATAT-T
1 TATT-TTAAATATATTTATATTTTATATTAATTT-T--TATATAATATCA
*
10708500 TATTTTTAATATATTTATATTTATATATTAATTTTTATATAATATCA
1 TATTTTAAATATATTTATATTT-TATATTAATTTTTATATAATATCA
10708547 TATTTTAAATATATTT
1 TATTTTAAATATATTT
10708563 TTAATGTCAT
Statistics
Matches: 88, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
43 5 0.06
44 2 0.02
45 5 0.06
46 24 0.27
47 42 0.48
48 2 0.02
49 8 0.09
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (46 bp):
TATTTTAAATATATTTATATTTTATATTAATTTTTATATAATATCA
Found at i:10708584 original size:5 final size:5
Alignment explanation
Indices: 10708574--10708739 Score: 63
Period size: 5 Copynumber: 32.4 Consensus size: 5
10708564 TAATGTCATA
*
10708574 TATTT TATTT TATTT TATTAT TATAATT TATTA TATTT TATTT TCA-TT
1 TATTT TATTT TATTT TATT-T TAT--TT TATTT TATTT TATTT T-ATTT
* * * * * * * *
10708622 T-CTT TAATA TATTTT TATAT TATAT TATTT TATTT TAATT TGTTT TA-TC
1 TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
* * * * * *
10708671 TATAT TATATA AATATT AATTT T-TTA TATTT TATTT TATTTT TATAT
1 TATTT TAT-TT TAT-TT TATTT TATTT TATTT TATTT TA-TTT TATTT
* *
10708718 TA-TA TGTTT TATTT TAATTT TA
1 TATTT TATTT TATTT T-ATTT TA
10708740 ATATTATAAA
Statistics
Matches: 120, Mismatches: 28, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
4 10 0.08
5 80 0.67
6 25 0.21
7 4 0.03
8 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (5 bp):
TATTT
Found at i:10708603 original size:23 final size:23
Alignment explanation
Indices: 10708572--10708737 Score: 71
Period size: 23 Copynumber: 7.3 Consensus size: 23
10708562 TTTAATGTCA
* *
10708572 TATATTTTATTTTATTTTATTAT
1 TATAATTTATTATATTTTATTAT
10708595 TATAATTTATTATATTTTATT-T
1 TATAATTTATTATATTTTATTAT
** *
10708617 TCATTTCTTTAATATATTTT-TATAT
1 T-A-TAATTTATTATATTTTAT-TAT
*
10708642 TAT-A-TTATTTTATTTTA--AT
1 TATAATTTATTATATTTTATTAT
** * * *
10708661 T-TGTTTTATCTATATTATATAAA
1 TATAATTTAT-TATATTTTATTAT
*
10708684 TATTAATTTTTTATATTTTATT-T
1 TA-TAATTTATTATATTTTATTAT
** *
10708707 TATTTTTATATTATATGTT-TTAT
1 TATAATT-TATTATATTTTATTAT
*
10708730 TTTAATTT
1 TATAATTT
10708738 TAATATTATA
Statistics
Matches: 104, Mismatches: 25, Indels: 29
0.66 0.16 0.18
Matches are distributed among these distances:
18 1 0.01
19 3 0.03
20 4 0.04
21 17 0.16
22 8 0.08
23 40 0.38
24 24 0.23
25 7 0.07
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (23 bp):
TATAATTTATTATATTTTATTAT
Found at i:10708657 original size:40 final size:39
Alignment explanation
Indices: 10708607--10708738 Score: 112
Period size: 40 Copynumber: 3.4 Consensus size: 39
10708597 TAATTTATTA
*
10708607 TATTTTATTTTCATTTCTTTAATATATTTTTATATTATAT
1 TATTTTATTTTAATTT-TTTAATATATTTTTATATTATAT
* * * *
10708647 TATTTTATTTTAATTTGTTTTATCTA-TATTATATAAATAT
1 TATTTTATTTTAATTT-TTTAATATATTTTTATAT-TATAT
* * * *
10708687 TA-ATT-TTTT-ATATTTTATTTTATTTTTATATTATA-
1 TATTTTATTTTAATTTTTTAATATATTTTTATATTATAT
*
10708722 TGTTTTATTTTAATTTT
1 TATTTTATTTTAATTTT
10708739 AATATTATAA
Statistics
Matches: 71, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
35 1 0.01
36 11 0.15
37 14 0.20
38 8 0.11
39 9 0.13
40 28 0.39
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (39 bp):
TATTTTATTTTAATTTTTTAATATATTTTTATATTATAT
Found at i:10708687 original size:45 final size:42
Alignment explanation
Indices: 10708638--10708722 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 42
10708628 ATATATTTTT
10708638 ATATTATATTATTTTAT-TTTAATTTGT-TTTATCTATATTATATAA
1 ATATTA-ATT-TTTTATATTTAATTT-TATTT-T-TATATTATATAA
*
10708683 ATATTAATTTTTTATATTTTATTTTATTTTTATATTATAT
1 ATATTAATTTTTTATATTTAATTTTATTTTTATATTATAT
10708723 GTTTTATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
42 10 0.27
43 8 0.22
44 13 0.35
45 6 0.16
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (42 bp):
ATATTAATTTTTTATATTTAATTTTATTTTTATATTATATAA
Found at i:10708712 original size:18 final size:20
Alignment explanation
Indices: 10708691--10708732 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
10708681 AAATATTAAT
10708691 TTTTTATATT-T-TATTTTA
1 TTTTTATATTATATATTTTA
*
10708709 TTTTTATATTATATGTTTTA
1 TTTTTATATTATATATTTTA
10708729 TTTT
1 TTTT
10708733 AATTTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
19 1 0.05
20 10 0.48
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTTATATTATATATTTTA
Found at i:10708735 original size:45 final size:45
Alignment explanation
Indices: 10708647--10708738 Score: 87
Period size: 50 Copynumber: 1.9 Consensus size: 45
10708637 TATATTATAT
* * *
10708647 TATTTTATTTTAATTTGTTTTATCTATATTATATAAATATTAATTTTTTA
1 TATTTTATTTT-ATTTATTATAT-TATATT-T-T-TATATTAATTTTTTA
*
10708697 TATTTTATTTTATTT-TTATATTATATGTTTTATTTTAATTTT
1 TATTTTATTTTATTTATTATATTATAT-TTTTATATTAATTTT
10708739 AATATTATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
45 10 0.26
46 1 0.03
47 6 0.16
48 6 0.16
49 4 0.11
50 11 0.29
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.68
Consensus pattern (45 bp):
TATTTTATTTTATTTATTATATTATATTTTTATATTAATTTTTTA
Found at i:10708744 original size:26 final size:25
Alignment explanation
Indices: 10708699--10708747 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
10708689 ATTTTTTATA
*
10708699 TTTTATTTTATTTTTATATTATATG
1 TTTTATTTTATTTTAATATTATATG
10708724 TTTTATTTTAATTTTAATATTATA
1 TTTTATTTT-ATTTTAATATTATA
10708748 AAATATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (25 bp):
TTTTATTTTATTTTAATATTATATG
Found at i:10708747 original size:31 final size:31
Alignment explanation
Indices: 10708683--10708747 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
10708673 TATTATATAA
* * * *
10708683 ATATTAATTTTTTATATTTTATTTTATTTTT
1 ATATTAATGTTTTATATTTAATTTTAATATT
10708714 ATATTATATGTTTTAT-TTTAATTTTAATATT
1 ATATTA-ATGTTTTATATTTAATTTTAATATT
10708745 ATA
1 ATA
10708748 AAATATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 21 0.72
32 8 0.28
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (31 bp):
ATATTAATGTTTTATATTTAATTTTAATATT
Found at i:10726996 original size:19 final size:20
Alignment explanation
Indices: 10726961--10726999 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
10726951 AAAAATGGAT
10726961 AAATTTAAATAAAAAATAAA
1 AAATTTAAATAAAAAATAAA
*
10726981 AAATTT-AATTAAAAATAAA
1 AAATTTAAATAAAAAATAAA
10727000 TATAAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAATTTAAATAAAAAATAAA
Found at i:10735344 original size:165 final size:163
Alignment explanation
Indices: 10734885--10735360 Score: 544
Period size: 165 Copynumber: 2.9 Consensus size: 163
10734875 GAAAATTAGA
* * * *
10734885 GGAAATGGACCAACGACAGGTGGGCAAGGTAGTTGTTCTCCTTTTGGTGGCATGCACACCTGAAA
1 GGAAA-GGACCAACGACAGGTGGGCAAGGTAGTAGTTCTCCCTTTGGCGGCATGCACACGTGAAA
* * *
10734950 AGATTCAAAATAAAGCTCCCATGCGATCGGTTGAGGAAGCAAAGGAAGGAAGACAGCCGACAATC
65 AGAATGAAAATAAAGCTCCCATGCGATCGG-TGAGGAAGCAAAGGAAGGAAGACAGCCGGCAATC
* * **
10735015 --CATGAGCACGTCGAATGGGGCGGAAAACCAGTG
129 AACATGACCACGTCGAACGGGGCGGAAAACCAACG
* ** * **
10735048 GAAAAGGACCAACGACAGGTGACCAAGGTAGTAGTTCTCCCCTTGGCGGCATATACACGTGAAAA
1 GGAAAGGACCAACGACAGGTGGGCAAGGTAGTAGTTCTCCCTTTGGCGGCATGCACACGTGAAAA
* * * * * * *
10735113 GAATGAAAACAAAGCTCCCATGCGATCTGGTGAGGAGGAAAAAGAAAGAAGAAAGCCGGTAATCA
66 GAATGAAAATAAAGCTCCCATGCGATC-GGTGAGGAAGCAAAGGAAGGAAGACAGCCGGCAATCA
* * * *
10735178 ACTTTGACCACG-CTGACCGGGGGGGAAAATCAACG
130 AC-ATGACCACGTC-GAACGGGGCGGAAAACCAACG
* * * *
10735213 GGAAAGGACCAACGACAGGTGGGCAAGGAAGTCGTCCTCCCTTTGGCGGCATGCACAGGTGAAAA
1 GGAAAGGACCAACGACAGGTGGGCAAGGTAGTAGTTCTCCCTTTGGCGGCATGCACACGTGAAAA
* *
10735278 GAATGAAAATAAAGCTCCCATGCGATCAGGTGAGGAAGCAATGGAAGGAAGGCAGCCGGCAATCA
66 GAATGAAAATAAAGCTCCCATGCGATC-GGTGAGGAAGCAAAGGAAGGAAGACAGCCGGCAATCA
* *
10735343 ACCTGGACCAAGTCGAAC
130 ACAT-GACCACGTCGAAC
10735361 TGAGTATGTG
Statistics
Matches: 255, Mismatches: 51, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
162 102 0.40
163 6 0.02
164 3 0.01
165 143 0.56
166 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.30, T:0.15
Consensus pattern (163 bp):
GGAAAGGACCAACGACAGGTGGGCAAGGTAGTAGTTCTCCCTTTGGCGGCATGCACACGTGAAAA
GAATGAAAATAAAGCTCCCATGCGATCGGTGAGGAAGCAAAGGAAGGAAGACAGCCGGCAATCAA
CATGACCACGTCGAACGGGGCGGAAAACCAACG
Done.