Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403273.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_948.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2429
ACGTcount: A:0.28, C:0.08, G:0.09, T:0.24

Warning! 769 characters in sequence are not A, C, G, or T


Found at i:2390 original size:172 final size:163

Alignment explanation


    Indices: 2096--2418  Score: 321
    Period size: 172  Copynumber: 1.9  Consensus size: 163

       2086 NNNNNNNNNN

                  *                 *   *                        *          *
       2096 AGGAATTGGAGACTATAAATAGACTTTTTTTACCAATGATGCCTTTTTTTCTTTATGTTTATCAT
          1 AGGAATAGGAGACTATAAATAGACATTTCTTACCAATGATGCCTTTTTTTCTTCATGTTTATCAA

                         *           *   *         *   *  *  *          *    
       2161 GGTAAACATTCAATTATAGTCTGTTTTAACCAAAAATATTAAAGAAGCTGAACATAAAATTAATT
         66 GGTAAACATTCAAGTATAGTCTGTTCTAAACAAAAATATAAAAAAAACTAAACATAAAATCAATT

                                             
       2226 TTGAGATAATAAAACTATTTACAGTCAGTAATA
        131 TTGAGATAATAAAACTATTTACAGTCAGTAATA

                                          *          **                      
       2259 NNNNNNNNNNAGGAATAGGAGACTATAAATGGACATTTCTTGTCAATGAATG-C-TTTTTTCTTC
          1 ----------AGGAATAGGAGACTATAAATAGACATTTCTTACCAATG-ATGCCTTTTTTTCTTC

                  *        *                                 *          *    
       2322 ATGTTTCTCAAGGTAGACATTCAAGTATAGT-T-TTCCTAAACAAAAATGTAAAACAAAATTAAA
         55 ATGTTTATCAAGGTAAACATTCAAGTATAGTCTGTT-CTAAACAAAAATATAAAA-AAAACTAAA

                                              
       2385 CATAAAATCAATTTTGAGATAATAAAACTATTTA
        118 CATAAAATCAATTTTGAGATAATAAAACTATTTA

       2419 AAGTGAGCAA


Statistics
Matches: 127,  Mismatches: 20, Indels: 7
        0.82            0.13        0.05

Matches are distributed among these distances:
 170    2  0.02
 171   15  0.12
 172   74  0.58
 173   33  0.26
 174    3  0.02

ACGTcount: A:0.39, C:0.11, G:0.12, T:0.35


Consensus pattern (163 bp):   
AGGAATAGGAGACTATAAATAGACATTTCTTACCAATGATGCCTTTTTTTCTTCATGTTTATCAA
GGTAAACATTCAAGTATAGTCTGTTCTAAACAAAAATATAAAAAAAACTAAACATAAAATCAATT
TTGAGATAATAAAACTATTTACAGTCAGTAATA
Done.