Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403280.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_955.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.27, C:0.08, G:0.09, T:0.26

Warning! 415 characters in sequence are not A, C, G, or T


Found at i:618 original size:170 final size:157

Alignment explanation


    Indices: 379--686  Score: 289
    Period size: 170  Copynumber: 1.9  Consensus size: 157

        369 AGGAATGAGG

                      *  *        *                *  *   *      *   *    *  
        379 GACTATAAATGAACTTTTCTTGTCAATGAATGCTTTTTTGTTTAAGTTTCCTAGGCTGGACATTT
          1 GACTATAAATCAAATTTTCTTGCCAATGAATGCTTTTTTCTTCAAGGTTCCTAAGCTAGACAATT

                  *    *      *                           *                  
        444 AATTATTATCTGTTTTAATC-AAAAATATAAAAAAA-TCAACTTAATATCAATTATTAGATTATA
         66 AATTATAATCTATTTT-AGCAAAAAATATAAAAAAATTCAACTTAAAATCAATTATTAGATTATA

                                                      
        507 AAACCATTTAAAGTGAGTAATAAGGCNNNNNNNNNNNNNNGC
        130 AAACCATTTAAAGTGAGTAATAAGGC--------------GC

                                       *                *           *        
        549 GACTATAAATCAAATTTTCTTGCCAATTAATGCTTTTTTCTTCACGGTT-CTCAAGTTAGACAAT
          1 GACTATAAATCAAATTTTCTTGCCAATGAATGCTTTTTTCTTCAAGGTTCCT-AAGCTAGACAAT

                                       *                          *          
        613 TAATTATAATCTATTTTAGCAAAAAATGTAAAAAAATTCAACTTAAAATCAATTGTTAGATTATA
         65 TAATTATAATCTATTTTAGCAAAAAATATAAAAAAATTCAACTTAAAATCAATTATTAGATTATA

                     
        678 AAACCATTT
        130 AAACCATTT

        687 NNNNNNNNNN


Statistics
Matches: 117,  Mismatches: 18, Indels: 5
        0.84            0.13        0.04

Matches are distributed among these distances:
 169    4  0.03
 170   78  0.67
 171   35  0.30

ACGTcount: A:0.37, C:0.12, G:0.10, T:0.37


Consensus pattern (157 bp):   
GACTATAAATCAAATTTTCTTGCCAATGAATGCTTTTTTCTTCAAGGTTCCTAAGCTAGACAATT
AATTATAATCTATTTTAGCAAAAAATATAAAAAAATTCAACTTAAAATCAATTATTAGATTATAA
AACCATTTAAAGTGAGTAATAAGGCGC
Done.