Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018403290.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_964.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2857
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.33
Warning! 223 characters in sequence are not A, C, G, or T
Found at i:902 original size:172 final size:168
Alignment explanation
Indices: 134--1520 Score: 883
Period size: 173 Copynumber: 8.1 Consensus size: 168
124 NNNNNNNNNN
* * * * * * *
134 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGCAATAAGGCTTTCGAAAGAATGAGAGACT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAT-AGGGACT
* * * * * *
199 CTAA-ATGGACATTTCCTACCAATGAATG-TTTTTCTCTTGATGTTTCT-AGAGGTAGACATTCA
65 ATAAGA--GACTTTTCTTGCCAATGAATGCTTTTT-TCTTCAAGTTTCTCA-A-GTAGACATTCA
* **
261 ATTATAGTCTGTTCTAACAAAAAAT-TTTAAAAAATTGAACTTAA
125 ATTATAGTCTGTTTTAAC-AAAAATGTAAAAAAAATTGAACTTAA
* * ********** * * * *
305 AATTAATTATGAGATTANNNNNNNNNNTAAAGCGAGTAATAAGGCTTTTGAAGG-ATTGGAAAAT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGG--GAC
* *** * * * * * ** *
369 TATAA-ATGAACTTTTGTTAATAACGAATACCTTTTTCTTCATGTTTGTTGAGATAGACATTCAG
64 TATAAGA-G-ACTTTTCTTGCCAATGAATGCTTTTTTCTTCAAGTTTCTCAAG-TAGACATTCAA
* *
433 TTATAGTTTGTTTTCACTAAAAATGTAAAAAAAAATTGAACTTAA
126 TTATAGTCTGTTTTAAC-AAAAATGT-AAAAAAAATTGAACTTAA
* * * * **
478 AATCAATTATGAGTTTATAAAACCATTTAAAGCGATTAGTAAGGCTTTTGAAGGAATGAAAGACT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAT-AGGGACT
* * * * * * * *
543 ATACATAGACTTTTCTTCCCAATGAATGCTTTTTTCATCTATTTTTTGAAGTAGACATTGAATTA
65 ATA-AGAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCAAGTTTCTCAAGTAGACATTCAATTA
* * * * *
608 TAGTTTGTTTTGACCAAAATATAAAAAAAAATTGAACTTGA
129 TAGTCTGTTTTAACAAAAATGT-AAAAAAAATTGAACTTAA
* ********** * * *
649 AATCAATTATGAGATNNNNNNNNNNTTTAAAGCAAGTAATAAGACTTTTAAAGGAATAAGAGACT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAT-AGGGACT
* * * * *
714 ATCAATGA-AGTTTTCTTGACAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAGACATTTAGT
65 AT-AA-GAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCAAGTTTCTCAA-GTAGACATTCAAT
*
778 TATAGTCTGTTTTAACTGAAAATGTAAAAAAAATTGAACTTAA
127 TATAGTCTGTTTTAAC-AAAAATGTAAAAAAAATTGAACTTAA
* * * * * *
821 AATCAATTTTGAGGGTATAAAACCATTAAAAGCAAGCAATAAGGCTTTCGAAGGAATAGGTTACT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGG-GACT
* *
886 ATAAGAGGATTTTTCTTGCCAATGAATGCTATTTTT-TTCAAGTTTCTTGAAGTAGACATTCAAT
65 ATAAGA-GACTTTTCTTGCCAATGAATGCT-TTTTTCTTCAAGTTTC-TCAAGTAGACATTCAAT
** *
950 TATAACCTGTTTTTAACCAAAAATGTAAAAAAACTTGAACTTAA
127 TATAGTCTG-TTTTAA-CAAAAATGTAAAAAAAATTGAACTTAA
* * * *
994 AATCAATTTTGAGGTTAAAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAAGAATGAGAGACT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAT-AGGGACT
********* * * * * *
1059 ANNNNNNNNNNTTTCTTGTCAATGAATGCCTTTTTCTTTATA-TTTCTCGAGGTAGACATTCAAG
65 A-TAAGAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCA-AGTTTCTC-AAGTAGACATTCAAT
* * *
1123 TATAGTCTATTTTAAGCAAAAATGTGAAAAAGAATTGAACATAA
127 TATAGTCTGTTTTAA-CAAAAATGT-AAAAAAAATTGAACTTAA
* * * * * * * *** * *
1167 AATTATTTTTTAGATAATAAAACTATTTAAAGTGGGTACTAAGGCTTTTGAAGGAATGGGTGACT
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGG-GACT
* * * * * *
1232 ATTAATAGACTTTTCTTGTCAATGAATGCCTTTTTCTTCAAGTTTCTTGACA-TAGGCATTGAAT
65 A-TAAGAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCAAGTTTC-TCA-AGTAGACATTCAAT
* * * *
1296 TATAATCTGTTTTAACCAAAATTGTAAAAAAACTTGAAATTAA
127 TATAGTCTGTTTTAA-CAAAAATGTAAAAAAAATTGAACTTAA
* * * * * ** * * *
1339 AATTAATTATAAGATTATCAAACTATTTATGGCAAGTAATAAAGCTTTCGAAGAAAT-GGAAGAC
1 AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGG--GAC
* *
1403 TATAA-ATGGACTTTTCTTGCCCATGAATGCTTTTTTCTTCAAGTTTCTCAATGTAGACTTTCAA
64 TATAAGA--GACTTTTCTTGCCAATGAATGCTTTTTTCTTCAAGTTTCTCAA-GTAGACATTCAA
* * * *
1467 TTATTGTCTATTTTAACCAAAAAAGT-AAAAAAATTTAACTTAA
126 TTATAGTCTGTTTTAA-CAAAAATGTAAAAAAAATTGAACTTAA
1510 AATCAATTATG
1 AATCAATTATG
1521 NNNNNNNNNN
Statistics
Matches: 936, Mismatches: 242, Indels: 76
0.75 0.19 0.06
Matches are distributed among these distances:
169 1 0.00
170 8 0.01
171 242 0.26
172 315 0.34
173 360 0.38
174 9 0.01
175 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.35
Consensus pattern (168 bp):
AATCAATTATGAGGTTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGGGACTA
TAAGAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCAAGTTTCTCAAGTAGACATTCAATTATA
GTCTGTTTTAACAAAAATGTAAAAAAAATTGAACTTAA
Found at i:1084 original size:345 final size:342
Alignment explanation
Indices: 134--1517 Score: 1080
Period size: 345 Copynumber: 4.0 Consensus size: 342
124 NNNNNNNNNN
* * * * *
134 AATCAATTATGA-GATTATAAAACTATTTAAAGCGAGCAATAAGGCTTTCGAAAGAATGAGAG-A
1 AATCAATTTTGAGGA-TATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT-AG-GTA
* * * * * * * * * *
197 CTCTAAATGGACATTTCCTACCAATGAATG-TTTTTCTCTTGATGTTTCTAGAGGTAGACATTCA
63 CTAT-AATAGACTTTTCTTGCCAATGAATGCTTTTT-T-TTCAAGTTTCTTGAAGTAGACATTGA
* * * * * * ***
261 ATTATAGTCTGTTCTAACAAAAAATTTTAAAAAA-TTGAACTTAAAATTAATTATGAGATTANNN
125 ATTATAATCTGTTTTAACCAAAAATGTAAAAAAACTTGAACTTAAAATCAATTATGAGATTAAAA
******* * * * * * * *
325 NNNNNNNTAAAGCGAGTAATAAGGCTTTTGAAGGATTG-GAAAATTATAAATGAACTTTTGTTAA
190 AACCATTTAAAGCAAGTAATAAGGCTTTTGAAAGAATGAG-AGACTATAAATGAACTTTTCTTGA
* * * * * * ** * * * * *
389 TAACGAATACCTTTTTCTTCATGTTTGTTGAGATAGACATTCAGTTATAGTTTGTTTTCACTAAA
254 CAATGAATGCTTTTTTCTTCAAGTTTCTCAAGGTAGACATTTAGTTATAGTCTATTTTAACTAAA
454 AATGTAAAAAAAAATTGAACTTAA
319 AATGTAAAAAAAAATTGAACTTAA
* ** * * *
478 AATCAATTATGAGTTTATAAAACCATTTAAAGCGATTAGTAAGGCTTTTGAAGGAATGAAAG-AC
1 AATCAATTTTGAGGATATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT--AGGTAC
* * * *
542 TATACATAGACTTTTCTTCCCAATGAATGCTTTTTTCATCTA-TTTTTTGAAGTAGACATTGAAT
64 TATA-ATAGACTTTTCTTGCCAATGAATGCTTTTTT-TTCAAGTTTCTTGAAGTAGACATTGAAT
* * * * * * ******
606 TATAGTTTGTTTTGACCAAAATAT-AAAAAAAAATTGAACTTGAAATCAATTATGAGATNNNNNN
127 TATAATCTGTTTTAACCAAAA-ATGTAAAAAAACTTGAACTTAAAATCAATTATGAGATTAAAAA
**** * * * *
670 NNNNTTTAAAGCAAGTAATAAGACTTTT-AAAGGAATAAGAGACTATCAATGAAGTTTTCTTGAC
191 ACCATTTAAAGCAAGTAATAAGGCTTTTGAAA-GAATGAGAGACTATAAATGAACTTTTCTTGAC
* * *
734 AATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAGACATTTAGTTATAGTCTGTTTTAACTGAAA
255 AATGAATGCTTTTTTCTTCAAGTTTCTCAAGGTAGACATTTAGTTATAGTCTATTTTAACTAAAA
799 ATGT-AAAAAAAATTGAACTTAA
320 ATGTAAAAAAAAATTGAACTTAA
* * * * *
821 AATCAATTTTGAGGGTATAAAACCATTAAAAGCAAGCAATAAGGCTTTCGAAGGAATAGGTTACT
1 AATCAATTTTGAGGATATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGG-TACT
* * *
886 ATAAGAGGATTTTTCTTGCCAATGAATGCTATTTTTTTCAAGTTTCTTGAAGTAGACATTCAATT
65 ATAATA-GACTTTTCTTGCCAATGAATGCT-TTTTTTTCAAGTTTCTTGAAGTAGACATTGAATT
* * *
951 ATAACCTGTTTTTAACCAAAAATGTAAAAAAACTTGAACTTAAAATCAATTTTGAGGTTAAAAAA
128 ATAATCTG-TTTTAACCAAAAATGTAAAAAAACTTGAACTTAAAATCAATTATGAGATTAAAAAA
********** *
1016 CCATTTAAAGCAAGTAATAAGGCTTTTGAAAGAATGAGAGACTANNNNNNNNNNTTTCTTGTCAA
192 CCATTTAAAGCAAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAATGAACTTTTCTTGACAA
* * * *
1081 TGAATGCCTTTTTCTTTATA-TTTCTCGAGGTAGACATTCAAG-TATAGTCTATTTTAAGC-AAA
257 TGAATGCTTTTTTCTTCA-AGTTTCTCAAGGTAGACATT-TAGTTATAGTCTATTTTAA-CTAAA
* * *
1143 AATGTGAAAAAGAATTGAACATAA
319 AATGTAAAAAAAAATTGAACTTAA
* * * * * * * *
1167 AATTATTTTTTA-GATAATAAAACTATTTAAAGTGGGTACTAAGGCTTTTGAAGGAATGGGTGAC
1 AATCAATTTTGAGGAT-ATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGT-AC
* * *
1231 TATTAATAGACTTTTCTTGTCAATGAATGCCTTTTTCTTCAAGTTTCTTGACA-TAGGCATTGAA
64 TA-TAATAGACTTTTCTTGCCAATGAATG-CTTTTTTTTCAAGTTTCTTGA-AGTAGACATTGAA
* * * * **
1295 TTATAATCTGTTTTAACCAAAATTGTAAAAAAACTTGAAATTAAAATTAATTATAAGATTATCAA
126 TTATAATCTGTTTTAACCAAAAATGTAAAAAAACTTGAACTTAAAATCAATTATGAGATTAAAAA
* ** * * * *
1360 ACTATTTATGGCAAGTAATAAAGCTTTCG-AAGAAATG-GAAGACTATAAATGGACTTTTCTTGC
191 ACCATTTAAAGCAAGTAATAAGGCTTTTGAAAG-AATGAG-AGACTATAAATGAACTTTTCTTGA
* * * * *
1423 CCATGAATGCTTTTTTCTTCAAGTTTCTCAATGTAGAC-TTTCAATTATTGTCTATTTTAACCAA
254 CAATGAATGCTTTTTTCTTCAAGTTTCTCAAGGTAGACATTT-AGTTATAGTCTATTTTAACTAA
* *
1487 AAAAGT--AAAAAAATTTAACTTAA
318 AAATGTAAAAAAAAATTGAACTTAA
1510 AATCAATT
1 AATCAATT
1518 ATGNNNNNNN
Statistics
Matches: 834, Mismatches: 175, Indels: 63
0.78 0.16 0.06
Matches are distributed among these distances:
341 2 0.00
342 2 0.00
343 160 0.19
344 249 0.30
345 289 0.35
346 125 0.15
347 7 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.35
Consensus pattern (342 bp):
AATCAATTTTGAGGATATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGTACTA
TAATAGACTTTTCTTGCCAATGAATGCTTTTTTTTCAAGTTTCTTGAAGTAGACATTGAATTATA
ATCTGTTTTAACCAAAAATGTAAAAAAACTTGAACTTAAAATCAATTATGAGATTAAAAAACCAT
TTAAAGCAAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAATGAACTTTTCTTGACAATGAA
TGCTTTTTTCTTCAAGTTTCTCAAGGTAGACATTTAGTTATAGTCTATTTTAACTAAAAATGTAA
AAAAAAATTGAACTTAA
Found at i:1769 original size:171 final size:170
Alignment explanation
Indices: 1--1864 Score: 1224
Period size: 171 Copynumber: 10.9 Consensus size: 170
* * *
1 AATAAGGCATTTGAAGAAATGAGAGGCTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTCTT
1 AATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTCTT
* * * ************
66 CAAGTTTCTTGATGTAGACATTCAATTATTGTCTGTTTTAACCAAAAATACAANNNNNNNNNNNN
66 CAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTGAACT
*** * *
131 NNNAATCAATTATGAGATTATAAAACTATTTAAAGCGAGC
131 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * *
171 AATAAGGCTTTCGAA-AGAATGAGAGACTCTAAATGGACATTTCCTACCAATGAATGTTTTTCTC
1 AATAAGGCTTTTGAAGA-AATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTT-TC
* * * * * * *
235 TTGATGTTTCTAGAGGTAGACATTCAATTATAGTCTGTTCTAACAAAAAATTTTAAAAAATTGAA
64 TTCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTGAA
* **********
300 CTTAAAATTAATTATGAGATTANNNNNNNNNNTAAAGCGAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * *** * *
342 AATAAGGCTTTTGAAGGATTG-GAAAATTATAAATGAACTTTTGTTAATAACGAATACCTTTTTC
1 AATAAGGCTTTTGAAGAAATGAG-AGACTATAAATGGACTTTTCTTGCCAATGAAT-GCTTTTTC
* * * * * * * *
406 TTCATGTTTGTTGAGATAGACATTCAGTTATAGTTTGTTTTCACTAAAAATGTAAAAAAAAATTG
64 TTCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA--TATAAAAAAATTG
* *
471 AACTTAAAATCAATTATGAGTTTATAAAACCATTTAAAGCGATT
127 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * *
515 AGTAAGGCTTTTGAAGGAATGAAAGACTATACATAGACTTTTCTTCCCAATGAATGCTTTTTTCA
1 AATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGC-TTTTTCT
* * * * * * *
580 TCTA-TTTTTTGAAGTAGACATTGAATTATAGTTTGTTTTGACCAAAATATAAAAAAAAATTGAA
65 TCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAA-ATATAAAAAAATTGAA
* ********** *
644 CTTGAAATCAATTATGAGATNNNNNNNNNNTTTAAAGCAAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * *
686 AATAAGACTTTTAAAGGAATAAGAGACTATCAATGAAGTTTTCTTGACAATGAATGCTTTTTTCT
1 AATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGC-TTTTTCT
* ** * * ** *
751 TCACGTTTCTCAAGGTAGACATTTAGTTATAGTCTGTTTTAACTGAAAATGTAAAAAAAATTGAA
65 TCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAAATTGAA
* ** * * *
816 CTTAAAATCAATTTTGAGGGTATAAAACCATTAAAAGCAAGC
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
858 AATAAGGCTTTCGAAGGAAT-AG-GTTACTATAAGA-GGATTTTTCTTGCCAATGAATGCTATTT
1 AATAAGGCTTTTGAAGAAATGAGAG--ACTATAA-ATGGACTTTTCTTGCCAATGAATGCT-TTT
* * ** *
920 TTTTCAAGTTTCTTGAAGTAGACATTCAATTATAACCTGTTTTTAACCAAAAATGTAAAAAAACT
62 TCTTCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTG-TTTTAACCAAAAATATAAAAAAA-T
* * * *
985 TGAACTTAAAATCAATTTTGAGGTTAAAAAACCATTTAAAGCAAGT
125 TGAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
********** *
1031 AATAAGGCTTTTGAA-AGAATGAGAGACTANNNNNNNNNNTTTCTTGTCAATGAATGCCTTTTTC
1 AATAAGGCTTTTGAAGA-AATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTTTTC
* * * * * *
1095 TTTATA-TTTCTCGAGGTAGACATTCAAGTATAGTCTATTTTAAGCAAAAATGTGAAAAAGAATT
64 TTCA-AGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAA-AATT
* * * * * * * * *
1159 GAACATAAAATTATTTTTTAGATAATAAAACTATTTAAAGTGGGT
126 GAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * *
1204 ACTAAGGCTTTTGAAGGAATGGGTGACTATTAATAGACTTTTCTTGTCAATGAATGCCTTTTTCT
1 AATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTTTTCT
** * * * * *
1269 TCAAGTTTCTTGACATAGGCATTGAATTATAATCTGTTTTAACCAAAATTGTAAAAAAACTTGAA
65 TCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAA-TTGAA
* * * * * ** *
1334 ATTAAAATTAATTATAAGATTATCAAACTATTTATGGCAAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * *
1376 AATAAAGCTTTCGAAGAAATG-GAAGACTATAAATGGACTTTTCTTGCCCATGAATGCTTTTTTC
1 AATAAGGCTTTTGAAGAAATGAG-AGACTATAAATGGACTTTTCTTGCCAATGAATGC-TTTTTC
** * * * * *
1440 TTCAAGTTTCTCAATGTAGACTTTCAATTATTGTCTATTTTAACCAAAAA-AGTAAAAAAATTTA
64 TTCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAAAAAAATTGA
*********************
1504 ACTTAAAATCAATTAT--G---NNNNNNNNNNNNNNNNNNNNN
128 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
*******
1542 NNNNNNNCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTCTCT
1 AATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTT-TCT
* * * * *
1607 TCAAGTTTCTTGATGTATACATTTAATTATTA-TCTGTTTTAACCAAAAATATAAATAAATTCAA
65 TCAAGTTTCTTGAGGTAGACATTCAATTA-TAGTCTGTTTTAACCAAAAATATAAAAAAATTGAA
* * * * *
1671 CTTGAAATCAATTATGACATTATAAAACCGTTAAAAGTGAGT
129 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
** *
1713 AATAAGGCTTTTGAAGAAATTG-GAGACTATAAATAAACTTTTCTTACCAATGAATGCTTTTCTC
1 AATAAGGCTTTTGAAGAAA-TGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTT-TC
* * * * ** * *
1777 TTTATGTTTCTGGAGGTAGACATTCAATTATAGTCTGTTCTAATAAAAAATTTGAAAAAATTGAA
64 TTCAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTGAA
1842 CTTAAAATCAATTATGAGATTAT
129 CTTAAAATCAATTATGAGATTAT
1865 NNNNNNNNNN
Statistics
Matches: 1282, Mismatches: 369, Indels: 85
0.74 0.21 0.05
Matches are distributed among these distances:
165 4 0.00
166 114 0.09
167 3 0.00
169 2 0.00
170 54 0.04
171 398 0.31
172 351 0.27
173 348 0.27
174 7 0.01
175 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.35
Consensus pattern (170 bp):
AATAAGGCTTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTCTT
CAAGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTGAACT
TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
Done.