Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403306.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_979.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 950

Length: 1584
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.27

Warning! 350 characters in sequence are not A, C, G, or T


Found at i:1192 original size:172 final size:161

Alignment explanation


    Indices: 1004--1328  Score: 350
    Period size: 172  Copynumber: 2.0  Consensus size: 161

        994 NNNNNNNNNN

                                          *    *                            *
       1004 AAGCGAGTAATAAGGCTTTTGAAAAAATACGTGACTATAAATAGACTTTTCTTGCC-AATGAATG
          1 AAGCGAGTAATAAGGCTTTTGAAAAAATACATGACAATAAATAGACTTTTCTT-CCAAATGAATA

                           *        **       *                  *            
       1068 CC-TTTTCTCTCATGTTTCTTGAGGTAGACATTTAATTATAATATATTTTAATCAAAAATACAAA
         65 CCTTTTTCT-TCATGGTTCTTGAGACAGACATTCAATTATAATATATTTTAACCAAAAAT--AAA

                                               
       1132 AAAAAATT-AACTTAAAATCAATTATGAGTCTATA
        127 AAAAAATTCAACTTAAAATCAATTATGAGTCTATA

                                             **    *        *                
       1166 NNNNNNNNNNAAGCGAGTAATAAGGCTTTTGAAGGAATATATGACAATGAATAGACTTTTCTTCC
          1 ----------AAGCGAGTAATAAGGCTTTTGAAAAAATACATGACAATAAATAGACTTTTCTTCC

                                                 *           * *             
       1231 AAATGAATACCTTTTTCTTCATGGTTCTTGAGACAGATATTCAATTATAGTCTATTTTAACCAAA
         56 AAATGAATACCTTTTTCTTCATGGTTCTTGAGACAGACATTCAATTATAATATATTTTAACCAAA

                *      *                     
       1296 AATATAAAAAAGTTCAACTTAAAATCAATTATG
        121 AATAAAAAAAAATTCAACTTAAAATCAATTATG

       1329 GGATTATAAA


Statistics
Matches: 133,  Mismatches: 17, Indels: 7
        0.85            0.11        0.04

Matches are distributed among these distances:
 170    9  0.07
 171   20  0.15
 172   98  0.74
 173    6  0.05

ACGTcount: A:0.39, C:0.12, G:0.12, T:0.34


Consensus pattern (161 bp):   
AAGCGAGTAATAAGGCTTTTGAAAAAATACATGACAATAAATAGACTTTTCTTCCAAATGAATAC
CTTTTTCTTCATGGTTCTTGAGACAGACATTCAATTATAATATATTTTAACCAAAAATAAAAAAA
AATTCAACTTAAAATCAATTATGAGTCTATA
Done.