Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403307.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_98.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21876

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
484--1841
171
8.0
171
73
2
852
36
11
12
35
1.80
2228--2267
21
2.0
21
90
5
64
25
15
12
47
1.80
2305--3066
171
4.5
171
74
4
655
37
10
14
33
1.80
3325--3699
172
2.2
172
82
3
450
37
14
12
35
1.84
4111--6060
171
11.4
170
76
6
1400
37
10
13
34
1.80
4111--5913
683
2.6
679
80
5
1703
37
11
13
35
1.80
6953--7579
170
3.7
169
75
5
548
35
10
13
36
1.80
8718--9048
171
1.9
171
87
3
488
38
12
14
34
1.83
9218--9827
171
3.6
171
78
4
568
35
12
13
35
1.82
10500--11152
171
3.8
171
75
5
563
34
14
12
35
1.83
10500--11152
342
1.9
331
85
2
817
34
14
12
35
1.83
12511--14192
170
9.9
168
73
7
918
34
14
11
35
1.82
12628--14192
341
4.6
339
74
6
950
34
14
11
35
1.82
14782--15328
171
3.2
170
70
6
458
34
12
10
38
1.79
15742--16245
167
3.0
166
77
7
460
37
12
12
35
1.80
15527--16271
170
4.4
171
74
7
590
36
11
13
35
1.82
16570--17148
170
3.4
169
75
5
501
36
11
14
33
1.82
17358--18388
170
6.1
170
75
3
813
35
12
13
35
1.82
17358--18388
341
3.0
335
74
6
921
35
12
13
35
1.82
19084--19757
171
4.0
169
78
7
702
36
12
14
34
1.84

Tables:   1

The End!