Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403317.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_99.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6619
ACGTcount: A:0.22, C:0.09, G:0.08, T:0.22

Warning! 2551 characters in sequence are not A, C, G, or T


Found at i:3097 original size:172 final size:171

Alignment explanation


    Indices: 2184--3097  Score: 586
    Period size: 171  Copynumber: 5.3  Consensus size: 171

       2174 NNNNNNNAAA

                *                *       *     *     *   *   *               
       2184 TCAAGTTAAAATCAATTATGATATTATAATACCATATAAAGTGAGTAATTAGGCTTTT-GAAGGC
          1 TCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTCGAAGGC

                      *        *                  *      *                  *
       2248 ATGGGTGACTCTAAATAGGTTTTTCTTGCCAATGAATGCCTTTTTTTTCACGTTTCTCAAGGTAG
         66 ATGGGTGACTATAAATAGGCTTTTCTTG-CAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAA

             *  **********   *      *       *          
       2313 ACATNNNNNNNNNNTCTGTTTTAATCAAAAATGTAAAACAAAT
        130 ATATTTAATTATTATCTATTTTAACCAAAAATATAAAA-AAAT

             *  * *               *            ***********                   
       2356 TTAACTCAAAATCAATTATGAGGTTATAAAACCATNNNNNNNNNNTAATAAGGCTTTT-GAAGGC
          1 TCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTCGAAGGC

            *                 *      *               *        * *           *
       2420 TTGGGTGACTATAAATAGTCTTTTCGTGTCAATGAATGGCTCTTTCTTCATGCTTCTCAAGGTAG
         66 ATGGGTGACTATAAATAGGCTTTTCTTG-CAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAA

             * *        *             *      *         
       2485 ACAATTAATTATAATCTATTTTAA-CTAAAATAAAAATAAAAT
        130 ATATTTAATTATTATCTATTTTAACCAAAAATATAAA-AAAAT

                *     *          *                       *    ***************
       2527 TCAACTTAAAGTCAATTATGAAATTATAAAACCATTTAAAGCGAGTAAT-NNNNNNNNNNNNNNN
          1 TCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTCGAAGGC

             *                     *                               *         
       2591 ACGGGTGACTATAAAT-GGACTTGTCTTGCAAATGAATGGCTTTTTCTTCACGTTACTCAAGGTA
         66 ATGGGTGACTATAAATAGG-CTTTTCTTGC-AATGAATGGCTTTTTCTTCACGTTTCTCAAGGTA

              *          *                   *         
       2655 AACATTTAATTATAATCTATTTTAACCAAAAATGTAAAAAAAT
        129 AATATTTAATTATTATCTATTTTAACCAAAAATATAAAAAAAT

                         *        *                                          
       2698 TCAAGA-TAAAATTAATTATGACATTATAAAACCATTTAAAGCGAGAAATAAGGC-TTTCGAAGG
          1 TCAA-ATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTCGAAGG

            *           *      *    *       *                  *      **     
       2761 TATGGGTGACTACAAATAGACTTTACTTGCCAGTGAATGGCTTTTTCTTCATGTTTCTTGAGGTA
         65 CATGGGTGACTATAAATAGGCTTTTCTTG-CAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTA

            *               *         **     *           
       2826 GATATTTAATTA-TATTTGATTTTAAATAAAAACA-AAAAATAAT
        129 AATATTTAATTATTATCT-ATTTTAACCAAAAATATAAAAA-AAT

              * *     *   *   *                     **********        *      
       2869 TCCACTTAAAGTCAGTTACGAGATTATAAAACCATTTAAANNNNNNNNNNAGGCTTTTGGAAGGC
          1 TCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTCGAAGGC

                                                     *  *      *             
       2934 ATGGGTGACTATAAATAGGCTTTTCTTGACAATGAATGGCTCTTCCTTCACATTTCTCAAGGTAA
         66 ATGGGTGACTATAAATAGGCTTTTCTTG-CAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAA

                 *                                *   
       2999 ATATTCAATTATTATCTATTTTAACCAAAAATATAAAACAAT
        130 ATATTTAATTATTATCTATTTTAACCAAAAATATAAAAAAAT

                                  *    **  *           * *           
       3041 TCAAATTAAAATCAATTATGAGGTTATGCAATCATTTAAAGCGGGTAATAAGGCTTT
          1 TCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTT

       3098 CGNNNNNNNN


Statistics
Matches: 548,  Mismatches: 179, Indels: 30
        0.72            0.24        0.04

Matches are distributed among these distances:
 170   10  0.02
 171  280  0.51
 172  250  0.46
 173    8  0.01

ACGTcount: A:0.36, C:0.12, G:0.14, T:0.33


Consensus pattern (171 bp):   
TCAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTCGAAGGC
ATGGGTGACTATAAATAGGCTTTTCTTGCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAA
TATTTAATTATTATCTATTTTAACCAAAAATATAAAAAAAT
Done.