Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403319.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_991.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1595
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.30

Warning! 283 characters in sequence are not A, C, G, or T


Found at i:858 original size:171 final size:170

Alignment explanation


    Indices: 434--898  Score: 477
    Period size: 171  Copynumber: 2.7  Consensus size: 170

        424 NNNNNNNNNN

                *       *  *     *                               *           
        434 CAAGAAAAGCCCGTTCATAGTTACCCAAGCCTTCAAAAGCCTTATTACTCTCTGTAAATAGTTTT
          1 CAAGGAAAGCCCATTTATAGTCACCCAAGCCTTCAAAAGCCTTATTACTCTCTTTAAATAGTTTT

                                                 *         *                 
        499 ATACCCTCAAAATTGATTTTAAGTTGAA-TTTTTTATTTTTTTGTTTCAAACAGATTATAATTGA
         66 ATACCCTC-AAATTGATTTTAAGTTGAATTTTTTTATATTTTTG-TTAAAACAGATTATAATTGA

                  *             *         *           
        563 ATGTTTTCCTTGGCAAAACTTAATAAAAAAGCCATTCATTGG
        129 ATGTTTGCCTTGGCAAAACTGAATAAAAAACCCATTCATTGG

                      **          *                      *             *     
        605 CAAGGAAAGCTTATTTATAGTCCCCCAAGCCTTCAAAAGCCTTATCACTCTCTTTAAATGGTTTT
          1 CAAGGAAAGCCCATTTATAGTCACCCAAGCCTTCAAAAGCCTTATTACTCTCTTTAAATAGTTTT

             *********                                         *             
        670 NNNNNNNNNNAATTGATTTTAAGTTGAATTTTTTTATATTCTTTGTTAAAATAGATTATAATTGA
         66 -ATACCCTCAAATTGATTTTAAGTTGAATTTTTTTATATT-TTTGTTAAAACAGATTATAATTGA

            *             *          *             ****
        735 GTGTTTGCCTTGG-GAAACATGAA-GAAAAACCCATTCANNNN
        129 ATGTTTGCCTTGGCAAAAC-TGAATAAAAAACCCATTCATTGG

            ******                           *         *                     
        776 NNNNNNAAGCCCATTTATAGTCACCCAAGCCTTTAAAAGCCTTTTTACTCTCTTTAAATAGTTTT
          1 CAAGGAAAGCCCATTTATAGTCACCCAAGCCTTCAAAAGCCTTATTACTCTCTTTAAATAGTTTT

                                     *                                
        841 ATACCCTCAACATTGATTTTAAGTTAAATTTTTTTATATTTTTAGTTAAAACAGATTA
         66 ATACCCTCAA-ATTGATTTTAAGTTGAATTTTTTTATATTTTT-GTTAAAACAGATTA

        899 NNNNNNNNNN


Statistics
Matches: 232,  Mismatches: 56, Indels: 12
        0.77            0.19        0.04

Matches are distributed among these distances:
 170    4  0.02
 171  182  0.78
 172   42  0.18
 173    4  0.02

ACGTcount: A:0.31, C:0.16, G:0.11, T:0.38


Consensus pattern (170 bp):   
CAAGGAAAGCCCATTTATAGTCACCCAAGCCTTCAAAAGCCTTATTACTCTCTTTAAATAGTTTT
ATACCCTCAAATTGATTTTAAGTTGAATTTTTTTATATTTTTGTTAAAACAGATTATAATTGAAT
GTTTGCCTTGGCAAAACTGAATAAAAAACCCATTCATTGG
Done.