Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403322.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_994.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1812
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.21

Warning! 869 characters in sequence are not A, C, G, or T


Found at i:1466 original size:20 final size:21

Alignment explanation


    Indices: 1441--1479  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1431 AGAAACGTGT

                      *          
       1441 AAAAAAAGT-TATTTATTGAG
          1 AAAAAAAGTCCATTTATTGAG

                               
       1461 AAAAAAAGTCCATTTATTG
          1 AAAAAAAGTCCATTTATTG

       1480 TCACTCATTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    9  0.53
  21    8  0.47

ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33


Consensus pattern (21 bp):   
AAAAAAAGTCCATTTATTGAG

Done.