Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397870.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1174.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6296
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:3377 original size:22 final size:22

Alignment explanation


    Indices: 3336--3391  Score: 60
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       3326 TATTCTTCTT

                                *  
       3336 TAAATTTTACAAAAAATATATTA
          1 TAAATTTTA-AAAAAATATAATA

                           *       
       3359 -AAATTTTAAAAAAGTTATAATA
          1 TAAATTTTAAAAAA-ATATAATA

                       
       3381 TAAATGTTTAA
          1 TAAAT-TTTAA

       3392 TGCTTTACAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 5
        0.80            0.06        0.14

Matches are distributed among these distances:
  21    5  0.18
  22   14  0.50
  23    4  0.14
  24    5  0.18

ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39


Consensus pattern (22 bp):   
TAAATTTTAAAAAAATATAATA
Done.