Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397315.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_515.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75742
ACGTcount: A:0.25, C:0.08, G:0.09, T:0.24
Warning! 25810 characters in sequence are not A, C, G, or T
Found at i:5648 original size:15 final size:15
Alignment explanation
Indices: 5628--5667 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
5618 TTTTAACCAA
5628 AAACTTAAAAATTTT
1 AAACTTAAAAATTTT
5643 AAACTTAAAAATTTT
1 AAACTTAAAAATTTT
5658 AAACTTAAAA
1 AAACTTAAAA
5668 TCAATTATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (15 bp):
AAACTTAAAAATTTT
Found at i:12713 original size:170 final size:170
Alignment explanation
Indices: 12369--12814 Score: 418
Period size: 170 Copynumber: 2.6 Consensus size: 170
12359 TCTTACCTAT
* * * * * *
12369 AATTGTGAGATTATAAAACCATTTAAAGCGAGCAATAAGACTTCCTG-AATGAATGAGAGACTAT
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTT--TGAAAGGAATGAGAGACAAT
* * * ** * *
12433 AAATGGATTTTTCTTTCAAATAAATAGGTTTTTGTACACGTTCCTTGAGGCAAGCGTTCAATTAT
64 AAATAGATTTTTCTTTCAAATAAATAGATTTTTCTACACGTTCCTCAAGGCAAGCATTCAACTAT
* **********
12498 AGTCTGTTTTAAGAAAAAATGTAAAAAATNNNNNNNNNNATC
129 AGTCTGTTTTAAGAAAAAATATAAAAAATATAACTTAAAATC
* * * *
12540 AATTATGAGATTATAAAACCATTTTAAGCGAGTAAAAAGGCTTTGAAAGGAATGGGTGAGAATAA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTTTGAAAGGAATGAGAGACAATAA
*
12605 ATAGATTTTT-TTTCAAAATAAATAGATTTTTCTACACGTTTCTCAAGGC-AGACATTCAACTAT
66 ATAGATTTTTCTTTC-AAATAAATAGATTTTTCTACACGTTCCTCAAGGCAAG-CATTCAACTAT
*
12668 AGTCTGTTTTAATAAAAAATATAAAAAA-ATTAACTTAAAATC
129 AGTCTGTTTTAAGAAAAAATATAAAAAATA-TAACTTAAAATC
* * * * *
12710 AATTATGATATTATAAAACCATTGAAAGCGAGTAATAAA-GCTTTTAAAGGAACGAGAGACTATA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAA-AAAGGCTTTGAAAGGAATGAGAGACAATA
** * * * *
12774 AATTTACTTTTCTTGCCAATAAAT-GCATTTTTCTTCACGTT
65 AATAGATTTTTCTTTCAAATAAATAG-ATTTTTCTACACGTT
12815 TCTTGAGGTA
Statistics
Matches: 223, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
169 9 0.04
170 170 0.76
171 44 0.20
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.33
Consensus pattern (170 bp):
AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTTTGAAAGGAATGAGAGACAATAA
ATAGATTTTTCTTTCAAATAAATAGATTTTTCTACACGTTCCTCAAGGCAAGCATTCAACTATAG
TCTGTTTTAAGAAAAAATATAAAAAATATAACTTAAAATC
Found at i:19106 original size:171 final size:170
Alignment explanation
Indices: 18712--19131 Score: 492
Period size: 171 Copynumber: 2.5 Consensus size: 170
18702 ATTTATTGGT
* *
18712 AAGAAAAGTAAATTTATAGTCTCCCGTTCCTTCAAAAGCTTTATTACTCGCTTTAAATGGTTTTA
1 AAGAAAAGTCAATTTATAGTCTCCCATTCCTTCAAAAGC-TTATTACTCGCTTTAAATGGTTTTA
* * * *
18777 TAATATCATAATTGATTTTAAGTTAATTTTTTTTATATTTTTTATTAAAATAGACTATAGTTGAA
65 TAATCTCATAATTCATTTTAAGTTAA-TTTTTTTATATTTTTTATTAAAACAGACTATAATTGAA
* * * * * *
18842 CGTCTGCCTCGAGAAACGTATAGAAAAATCTATTTATTTTGA
129 CCTCTGCCGCGAGAAACGTATACAAAAACCTATCTAATTTGA
* * ** * * *
18884 AA-AAAAATCTATTTATTCTCACCCATTCCTTCCAAAGCCTTATTACTCGCTTAAAATGGTTTTA
1 AAGAAAAGTCAATTTATAGTCTCCCATTCCTTCAAAAG-CTTATTACTCGCTTTAAATGGTTTTA
*
18948 TAATCTCATAATTCATTTTAAGTTGAA-TTTTTTATATTTTTTCTTAAAACAGACTATAATTGAA
65 TAATCTCATAATTCATTTTAAGTT-AATTTTTTTATATTTTTTATTAAAACAGACTATAATTGAA
* *
19012 CACT-TGCCGC-A-AAGAGTGTGTACAAAAACCTA-CTAATTTGA
129 C-CTCTGCCGCGAGAA-A-CGTATACAAAAACCTATCTAATTTGA
* * *
19053 AAGAAAAGTCCATTTATAGTCTCCCATTCCTTCAGAAAGTCATATTGCTCGCTTTAAATGGTTTT
1 AAGAAAAGTCAATTTATAGTCTCCCATTCCTTCA-AAAG-CTTATTACTCGCTTTAAATGGTTTT
19118 ATAATCTCATAATT
64 ATAATCTCATAATT
19132 TTAGGTAAGA
Statistics
Matches: 209, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
168 2 0.01
169 11 0.05
170 77 0.37
171 114 0.55
172 5 0.02
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.40
Consensus pattern (170 bp):
AAGAAAAGTCAATTTATAGTCTCCCATTCCTTCAAAAGCTTATTACTCGCTTTAAATGGTTTTAT
AATCTCATAATTCATTTTAAGTTAATTTTTTTATATTTTTTATTAAAACAGACTATAATTGAACC
TCTGCCGCGAGAAACGTATACAAAAACCTATCTAATTTGA
Found at i:19688 original size:172 final size:169
Alignment explanation
Indices: 19342--19676 Score: 420
Period size: 172 Copynumber: 2.0 Consensus size: 169
19332 NNNNNNNNNN
* ** *
19342 TTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAGTTTGTTTAACCCAAATGGAAAAAAATTC
1 TTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTAACAAAAAAGGAAAAAAATTC
* * * *
19407 AATGTAAAATCAATTATGAGATTTTAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAGGAATG
66 AATGTAAAATCAATTATAAGATTATAAAACTATTTAAAACGAGTAATAAGACTTTTGAAGAAATG
** *
19472 GGAGACTATAAATGGACTTTTCTTGTCAATGAACGCATT
131 GGAGACTATAAATAAACTTTTCTTGCCAATGAACGCATT
* * * *
19511 TTTCTTCACGTTTCTCAATGTAGACATTCATTTATAGTCTGTTTCCATCAAAAAAGTAAAAACAA
1 TTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTT--AACAAAAAAGGAAAAA-AA
* * * * ** *
19576 TTGAACT-TAAAATTAATTTTAAGATTATAAAGCTATTTAAAGTGAGTAATATGACTTTTGAAGA
63 TTCAA-TGTAAAATCAATTATAAGATTATAAAACTATTTAAAACGAGTAATAAGACTTTTGAAGA
*
19640 AATGGGTGACTATAAATAAACTTTTCTTGCCAATGAA
127 AATGGGAGACTATAAATAAACTTTTCTTGCCAATGAA
19677 TGTCTTTTTC
Statistics
Matches: 139, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
169 41 0.29
171 11 0.08
172 86 0.62
173 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (169 bp):
TTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTAACAAAAAAGGAAAAAAATTC
AATGTAAAATCAATTATAAGATTATAAAACTATTTAAAACGAGTAATAAGACTTTTGAAGAAATG
GGAGACTATAAATAAACTTTTCTTGCCAATGAACGCATT
Found at i:20243 original size:173 final size:171
Alignment explanation
Indices: 19695--20379 Score: 751
Period size: 170 Copynumber: 4.0 Consensus size: 171
19685 TCTTACCTAT
* *
19695 AATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGACTTTCTGAAGGAATGGGAGACTATA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTT-TGAAGGAATGAGAGACTATA
* * * * * *
19760 AATTGACTTTTCTTTCAAATAAATAGGTTTTTGTATACATTCCTTGAGGCAAGCGTTCAATTATA
65 AATTGACTTTTCTTTCAAATAAATAGATTTTTCTATACGTTTCTTGAGGCAAACATTCAATTATA
* * * *
19825 GTCTGTTTTAAGAAAAAAT-ATAAAAAATTCAACTTAAAATG
130 GTCTATTTTAACAAAAAATAAAAAAAAATTCAACTTAAAATC
* * * * *
19866 AAATATGAGATTATAAAACCATTTTAAGCGAGTAATAAGGCTTTGGAAGGAATGGATGGGA--AT
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAAGGAAT-GA-GAGACTAT
* * * * * * *
19929 AAATAGA-TTTTTTTTCAAAATAAATAGATTTTTCTACACGTTTCTCGAGGTAGACATTCAACTA
64 AAATTGACTTTTCTTTC-AAATAAATAGATTTTTCTATACGTTTCTTGAGGCAAACATTCAATTA
*
19993 TAGTCTATTTTAATAAAAAATAAAAAAAAATT-AACTTAAAATC
128 TAGTCTATTTTAACAAAAAATAAAAAAAAATTCAACTTAAAATC
* * * *
20036 AATTATGATATTATAAAACCATTTAAAGCGAGTAATAA-AGCTTTTGAAAGAACGAGAGACTACA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGA-CTTTTGAAGGAATGAGAGACTATA
* * * *
20100 AATTTACTTTTCTTGCCAATAAAT-GCATTTTTCT-TCACGTTTCTTGAGGTAAACATTCAATTA
65 AATTGACTTTTCTTTCAAATAAATAG-ATTTTTCTAT-ACGTTTCTTGAGGCAAACATTCAATTA
* * *
20163 TTGTCCATTTTAACCAAAAATGTAAAAAAAAATTCAACTTAAAATC
128 TAGTCTATTTTAA-CAAAAA-ATAAAAAAAAATTCAACTTAAAATC
* * * * *
20209 AATTATGAGATTTTAAAACCATTTAAAACGAGTAATAAGACTTTTGAAGGAATGGGTGTCTATAA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGAGAGACTATAA
* * * * *
20274 ATGGGCTTTTCTTTCAAATAAAT-GAATATTTCTATACGTCTCTTGAGGCAAGCATTCAATTATA
66 ATTGACTTTTCTTTCAAATAAATAG-ATTTTTCTATACGTTTCTTGAGGCAAACATTCAATTATA
* * * * *
20338 GCCTGTTTTAATAAAAAAT-ATAAAAAATTTAACTTAAAATC
130 GTCTATTTTAACAAAAAATAAAAAAAAATTCAACTTAAAATC
20379 A
1 A
20380 NNNNNNNNNN
Statistics
Matches: 426, Mismatches: 73, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
168 3 0.01
169 11 0.03
170 203 0.48
171 63 0.15
172 20 0.05
173 124 0.29
174 2 0.00
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (171 bp):
AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGAGAGACTATAA
ATTGACTTTTCTTTCAAATAAATAGATTTTTCTATACGTTTCTTGAGGCAAACATTCAATTATAG
TCTATTTTAACAAAAAATAAAAAAAAATTCAACTTAAAATC
Found at i:20332 original size:343 final size:341
Alignment explanation
Indices: 19695--20379 Score: 826
Period size: 343 Copynumber: 2.0 Consensus size: 341
19685 TCTTACCTAT
* * * *
19695 AATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGACTTTCTGAAGGAATGGGAGACTATA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGACTTTCTGAAAGAACGAGAGACTACA
* * * * *
19760 AATTGACTTTTCTTTCAAATAAATAGGTTTTTGTATACATTCCTTGAGGCAAGCGTTCAATTATA
66 AATTGACTTTTCTTGCAAATAAATAGATTTTTCTATACATTCCTTGAGGCAAACATTCAATTATA
** * * *
19825 GTCTGTTTTAAGAAAAAATATAAAAAATTCAACTTAAAATGAAATATGAGATTATAAAACCATTT
131 GTCCATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCAAATATGAGATTATAAAACCATTT
* * * * *
19890 TAAGCGAGTAATAAGGCTTTGGAAGGAATGGATGGGAATAAATAGATTTTTTTTCAAAATAAATA
196 AAAACGAGTAATAAGACTTTGGAAGGAATGGATGGCAATAAATAGATTTTCTTTCAAAATAAATA
* * * *
19955 GATTTTTCTACACGTTTCTCGAGGTAGACATTCAACTATAGTCTATTTTAATAAAAAATAAAAAA
261 GATATTTCTACACGTCTCTCGAGGAAGACATTCAACTATAGCCTATTTTAATAAAAAATAAAAAA
20020 AAATTAACTTAAAATC
326 AAATTAACTTAAAATC
* *
20036 AATTATGATATTATAAAACCATTTAAAGCGAGTAATAA-AGCTTT-TGAAAGAACGAGAGACTAC
1 AATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGA-CTTTCTGAAAGAACGAGAGACTAC
* * * * *
20099 AAATTTACTTTTCTTGCCAATAAAT-GCATTTTTCT-TCACGTTTCTTGAGGTAAACATTCAATT
65 AAATTGACTTTTCTTGCAAATAAATAG-ATTTTTCTAT-ACATTCCTTGAGGCAAACATTCAATT
* * * *
20162 ATTGTCCATTTTAACCAAAAATGTAAAAAAAAATTCAACTTAAAATCAATTATGAGATTTTAAAA
128 ATAGTCCATTTTAA-CAAAAA-AT-AAAAAAAATTCAACTTAAAATCAAATATGAGATTATAAAA
* * * * * *
20227 CCATTTAAAACGAGTAATAAGACTTTTGAAGGAATGGGTGTCTATAAATGGGCTTTTCTTTC-AA
190 CCATTTAAAACGAGTAATAAGACTTTGGAAGGAATGGATGGCAATAAAT-AGATTTTCTTTCAAA
* * * *
20291 ATAAAT-GAATATTTCTATACGTCTCTTGAGGCAAG-CATTCAATTATAGCCTGTTTTAATAAAA
254 ATAAATAG-ATATTTCTACACGTCTCTCGAGG-AAGACATTCAACTATAGCCTATTTTAATAAAA
* *
20354 AATATAAAAAATTTAACTTAAAATC
317 AATAAAAAAAAATTAACTTAAAATC
20379 A
1 A
20380 NNNNNNNNNN
Statistics
Matches: 289, Mismatches: 46, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
339 2 0.01
340 76 0.26
341 45 0.16
342 2 0.01
343 153 0.53
344 11 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (341 bp):
AATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGACTTTCTGAAAGAACGAGAGACTACA
AATTGACTTTTCTTGCAAATAAATAGATTTTTCTATACATTCCTTGAGGCAAACATTCAATTATA
GTCCATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCAAATATGAGATTATAAAACCATTT
AAAACGAGTAATAAGACTTTGGAAGGAATGGATGGCAATAAATAGATTTTCTTTCAAAATAAATA
GATATTTCTACACGTCTCTCGAGGAAGACATTCAACTATAGCCTATTTTAATAAAAAATAAAAAA
AAATTAACTTAAAATC
Found at i:21767 original size:172 final size:170
Alignment explanation
Indices: 21459--22008 Score: 540
Period size: 171 Copynumber: 3.2 Consensus size: 170
21449 NNNNNNATTC
* * * *
21459 AACTTAAAATCAATTATAAGATTATAAAACATTTTAAAGCGAGTAATAAGTCTTTTGAAGGAACG
1 AACTTCAAATCAATTATGAGATTATAAAACA-TTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * * *
21524 GGAGACAATAACTAGTCTTTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCAT-ACGGTAAAC
65 GGAGACTATAAATAGACTTTTCTTCCTAATGAATGCCTTTTTCTTCATGTTTCTTCA-GGTAAAC
* * *
21588 TTTCAATTATAATATGTTTTAACTAAAAATGTAGAAACAATTG
129 ATTCAATTATAATCTGTTTTAACTAAAAATGTA-AAAAAATTG
*********** * *
21631 AGNNNNNNNNNNATGT-TGAGATTATAAAACCATTTAAACCGAGTAATAAGGCTTTTGAAAGAAT
1 AACTTCAAATCAAT-TATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT
* * * *
21695 GGGCGACTATAAATAGACTTCTCTTCCTAATGAATGCCTTTTTCTTTATGTTTCTTCAGGTAGAC
64 GGGAGACTATAAATAGACTTTTCTTCCTAATGAATGCCTTTTTCTTCATGTTTCTTCAGGTAAAC
* * * *
21760 ATTCAATTATAGTCTATTTTAA-TGAGAAATGTAAAAAAATTT
129 ATTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTG
* * * *
21802 AACTTCAAATCAATTATGAAATTATAAAATCATTTAAAGCAAGTAATAAGGCATTTGATGGAATG
1 AACTTCAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * *
21867 GGTGACTATCAATAGACTTTTCTTGCC-AATGAATGCTTTTTTCTTCATGTTT-TTCTAGGTAAA
65 GGAGACTATAAATAGACTTTTCTT-CCTAATGAATGCCTTTTTCTTCATGTTTCTTC-AGGTAAA
*
21930 CATTCAATTATAATCTGTTTTAAAC-AAAAA-ATAAAAATAATTG
128 CATTCAATTATAATCTGTTTT-AACTAAAAATGTAAAAA-AATTG
* *
21973 ATCTTAAAATCAATGT-TGAGATTATAAAACCATTTA
1 AACTTCAAATCAAT-TATGAGATTATAAAA-CATTTA
22009 NNNNNNNNNN
Statistics
Matches: 302, Mismatches: 65, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
170 10 0.03
171 160 0.53
172 128 0.42
173 4 0.01
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.36
Consensus pattern (170 bp):
AACTTCAAATCAATTATGAGATTATAAAACATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGG
GAGACTATAAATAGACTTTTCTTCCTAATGAATGCCTTTTTCTTCATGTTTCTTCAGGTAAACAT
TCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTG
Found at i:29718 original size:16 final size:16
Alignment explanation
Indices: 29697--29728 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
29687 GTTTTAACTG
29697 AAAAATAAAAACAATT
1 AAAAATAAAAACAATT
*
29713 AAAAATAAAATCAATT
1 AAAAATAAAAACAATT
29729 CTGAGATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAATAAAAACAATT
Found at i:34594 original size:22 final size:22
Alignment explanation
Indices: 34566--34607 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34556 TAATTTTGAG
34566 ATAATAAAATTGTTT-AAAGAGT
1 ATAATAAAATT-TTTGAAAGAGT
*
34588 ATAATAAGATTTTTGAAAGA
1 ATAATAAAATTTTTGAAAGA
34608 ATGAGAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (22 bp):
ATAATAAAATTTTTGAAAGAGT
Found at i:38400 original size:171 final size:172
Alignment explanation
Indices: 38095--38891 Score: 865
Period size: 172 Copynumber: 4.7 Consensus size: 172
38085 NNNNNNAAAG
* *
38095 CGAGTAATAAGGCTTTTGAAGGAATGAGACACTATAAATGGACTTTTCTTGCCAATGAATG-TAT
1 CGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCT-T
* ** * * * *
38159 TTTTATTCATGTTTCTTGATGTAGACATTCATTTATAGTATGTTTCAACCAAAAA-AGTAAAAAC
65 TTTTCTTCATGTTTCTCAATGTAGACATTCAATTATAGTTTGTTTTAACCAAAAATATTAAAAA-
* * *
38223 AATTGAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAA
129 AATTGAACTTAAAATAAATTTTGAGATAATAAAACTATTTAAAA
* * ** *
38267 TGAGTAATAAGGCTTTT-ATAGGAATGGGTGACTAT-AATAAACTTTTCTTACCAATGAATG-TG
1 CGAGTAATAAGGCTTTTGA-AGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCT-
* * * * *
38329 TTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATTTATTTTAACAAAAAATATTGAAAA
64 TTTTTCTTCATGTTTCTCAATGTAGACATTCAATTATAGTTTGTTTTAACCAAAAATATTAAAAA
*
38394 AATTGAACTTAAAATAAATTTTGAGATTATAAAACTATTTAAAGA
129 AATTGAACTTAAAATAAATTTTGAGATAATAAAACTATTTAAA-A
* * * *
38439 -GAGTAATAAGGCTTTTGAAGGAGTAGAAGACTATAAATGGACTTTTCTTGCTAATGAATGCTTT
1 CGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTT
* * **
38503 TTTCTTCATGTTTCTCAAGGTAGACATTAAATTATAGTTTGTTTTAGTCAAAAATA-TAAGAAAA
66 TTTCTTCATGTTTCTCAATGTAGACATTCAATTATAGTTTGTTTTAACCAAAAATATTAA-AAAA
* * * *
38567 ACTGAACGTAAAATAAATTTTCAGATAATAAAACTATTTAAAG
130 ATTGAACTTAAAATAAATTTTGAGATAATAAAACTATTTAAAA
* * ** * *
38610 CGGGTAATAAGGCTTTTGAAGGAGT-TAAGGACTATAAATGGACTTCTCTTGCCAATAAATGCTT
1 CGAGTAATAAGGCTTTTGAAGGAATGGGA-GACTATAAATGGACTTTTCTTGCCAATGAATGCTT
* * * * *
38674 TTTTCTTCTTGCTTCTCGATGTAGACATTCAAATATAGTTTGTTTTAACCAAAAATATAAAAAAA
65 TTTTCTTCATGTTTCTCAATGTAGACATTCAATTATAGTTTGTTTTAACCAAAAATAT-TAAAAA
* * * * *
38739 AATTGAGCATAAAATCAATTTTGAGATAATAAAACTGTTTAAAG
129 AATTGAACTTAAAATAAATTTTGAGATAATAAAACTATTTAAAA
* * * * *
38783 CGGGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGAC-TTT-TT-----T---TGCCTT
1 CGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTT
* * *
38838 TCTCTTTATGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAACCAAAAA
66 TTTCTTCATGTTTCTCAATGTAGACATTCAATTATAGTTTGTTTTAACCAAAAA
38892 AGNNNNNNNN
Statistics
Matches: 534, Mismatches: 79, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
163 52 0.10
166 1 0.00
171 145 0.27
172 256 0.48
173 78 0.15
174 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (172 bp):
CGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTT
TTTCTTCATGTTTCTCAATGTAGACATTCAATTATAGTTTGTTTTAACCAAAAATATTAAAAAAA
TTGAACTTAAAATAAATTTTGAGATAATAAAACTATTTAAAA
Found at i:42116 original size:106 final size:104
Alignment explanation
Indices: 41912--42106 Score: 248
Period size: 106 Copynumber: 1.8 Consensus size: 104
41902 AACTTAAAAT
* * * *
41912 TAATTTTGAGATTATAAAACCATTTAAAGTAAGTAGTATAACTTTTGAAAGAATGGGTCACTATA
1 TAATTATGAGATTATAAAACCATTTAAAGCAAGCAG-ATAACTTTTGAAAGAATGGGACACTATA
* *
41977 AATAAACTTTTCTTGCCAATGAATGTCTTTTTCTTGCCTA
65 AATAAACTTTTCTTGCAAATAAATGTCTTTTTCTTGCCTA
* * *
42017 TAATTATGAGATTATAAAATCATTTAAAGCAAGCA-ATAAGGCTTTTTGAATGAATGGGAGACTA
1 TAATTATGAGATTATAAAACCATTTAAAGCAAGCAGATAA--C-TTTTGAAAGAATGGGACACTA
* *
42081 TAAATAGACTTTTCTTTCAAATAAAT
63 TAAATAAACTTTTCTTGCAAATAAAT
42107 AGGTTTTTCT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
103 4 0.05
105 32 0.42
106 40 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (104 bp):
TAATTATGAGATTATAAAACCATTTAAAGCAAGCAGATAACTTTTGAAAGAATGGGACACTATAA
ATAAACTTTTCTTGCAAATAAATGTCTTTTTCTTGCCTA
Found at i:43813 original size:171 final size:161
Alignment explanation
Indices: 43588--44055 Score: 406
Period size: 171 Copynumber: 2.8 Consensus size: 161
43578 TATAAAATCG
* * *
43588 TTTAAAGCGAGTAAAAAAGCTTTTTAAGGAATTGGTGAA-TATAAATGGACTTTTCTTGCTAATG
1 TTTAAAGCGAGTAATAAGGC-TTTTAAGGAA-TGG-GAACTATAAATGGACTTTTCTTGCCAATG
* *
43652 AATACTTTTTTCTTCACGTTTCTCAACATAGACATTCAATTATAGTTTGTTTTAACCAAAAATGT
63 AAT-CTTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTTTGTTTTAACCAAAAAAGT
* * **
43717 -AAAACTATTTAACTTAAAATCNNNNNNNNNNTTATAAAACTA
127 AAAAACAATTGAACTTAAAATC--------AATTATAAAACTA
*
43759 TTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGACACTATAAATGGACTTTTCTTGCCAATGA
1 TTTAAAGCGAGTAATAAGGCTTTT-AAGGAATGGGA-ACTATAAATGGACTTTTCTTGCCAATGA
* * * ** * *
43824 ATGCATTTTTATTCATGTTTCTTGATATAGACATTCATTTATAGTTTGTTTCAACCAAAAAAGTA
64 AT-CTTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTTTGTTTTAACCAAAAAAGTA
**
43889 AAAACAATTGAACTTAAAATCAANNNNNNNNNNATAAAACTA
128 AAAACAATTGAACTTAAAATCAA--------TTATAAAACTA
** * *
43931 TTTAAAATGAGTAATAAGGCTTTTATAGGAATAGGTG-ACTAT-AATAGACTTTTCTTACCAATG
1 TTTAAAGCGAGTAATAAGGCTTTTA-AGGAAT-GG-GAACTATAAATGGACTTTTCTTGCCAATG
* * * * *
43994 AATGTGTTTTTCTGCACGTTTCTCAATGTAGACATTCAATTATAATTTATTTTAA-CAAAAAA
63 AATCT-TTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTTTGTTTTAACCAAAAAA
44056 NNNNNNNNNN
Statistics
Matches: 244, Mismatches: 37, Indels: 33
0.78 0.12 0.11
Matches are distributed among these distances:
169 2 0.01
170 15 0.06
171 164 0.67
172 60 0.25
173 2 0.01
174 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.36
Consensus pattern (161 bp):
TTTAAAGCGAGTAATAAGGCTTTTAAGGAATGGGAACTATAAATGGACTTTTCTTGCCAATGAAT
CTTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTTTGTTTTAACCAAAAAAGTAAAA
ACAATTGAACTTAAAATCAATTATAAAACTA
Found at i:44972 original size:171 final size:171
Alignment explanation
Indices: 44790--45108 Score: 374
Period size: 171 Copynumber: 1.9 Consensus size: 171
44780 TTCAATTACA
*
44790 GTCTATTTTAACCAAAAA-AGTAAAAAAATTGAACATAAAATAAATTTTGAGATAATAAAACTAT
1 GTCTATTTTAACCAAAAATA-TAAAAAAATTCAACATAAAATAAATTTTGAGATAATAAAACTAT
* ** *
44854 TTAAAATGGCTAATAAGGCTTTTGAAGGAATAGGTAACTATAAATAGACTTTTCTTGA-CAATGA
65 TTAAAACGAATAATAAGGCTTTTGAAGGAATAGGAAACTATAAATAGACTTTTCTT-ACCAATGA
44918 ATGCATT-TTTCTTCATGTTTTACGAGGCGTACATGTAATTAGT
129 ATGC-TTGTTTCTTCATGTTTTACGAGGCGTACATGTAATTAGT
* * * * **********
44961 GTCTGTTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAANNNNNNNNNNATAAAACTATT
1 GTCTATTTTAACCAAAAATATAAAAAAATTCAACATAAAATAAATTTTGAGATAATAAAACTATT
** * * *
45026 TAAGGCGAATAATAAGGCTTTTGAAGGAATGGGAAACTCTAAATAGACTTTTGTTACCAATGAAT
66 TAAAACGAATAATAAGGCTTTTGAAGGAATAGGAAACTATAAATAGACTTTTCTTACCAATGAAT
45091 GCTTGTTTCTTCATGTTT
131 GCTTGTTTCTTCATGTTT
45109 CTCCAGGTAG
Statistics
Matches: 121, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
170 3 0.02
171 117 0.97
172 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.34
Consensus pattern (171 bp):
GTCTATTTTAACCAAAAATATAAAAAAATTCAACATAAAATAAATTTTGAGATAATAAAACTATT
TAAAACGAATAATAAGGCTTTTGAAGGAATAGGAAACTATAAATAGACTTTTCTTACCAATGAAT
GCTTGTTTCTTCATGTTTTACGAGGCGTACATGTAATTAGT
Found at i:46219 original size:21 final size:20
Alignment explanation
Indices: 46193--46231 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
46183 GAATGGGTGA
46193 AAATAAATGGACTTTTTTTCT
1 AAATAAATGGA-TTTTTTTCT
*
46214 AAATAAATGTATTTTTTT
1 AAATAAATGGATTTTTTT
46232 ACACATTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (20 bp):
AAATAAATGGATTTTTTTCT
Found at i:46380 original size:171 final size:168
Alignment explanation
Indices: 45963--46721 Score: 509
Period size: 170 Copynumber: 4.5 Consensus size: 168
45953 TTCTTACTTA
* * *
45963 TAATTATGAGATTATAAAATCATTTAAA-CAAGCAATAAGGCTTTTTGAAGGAATGAGAGACTAT
1 TAATTATGAGATTATAAAACCATTTAAAGGAA-TAATAAGGC-TTTTGAAGGAATGAGAGACTAT
* * * * * *
46027 AAATGGATTTTTCTTTCAAATAAATAGGTTTTTCTACACGTTTCCTGAGGCAAGCATTCAATTAT
64 AAATGGACTTTT-TTTCAAATAAATAGATTTTTCTACACATTGCCTGAGACAAGCATTCAACTAT
*
46092 AGTCTATTTTAAGATAAAATATAAAAAATTCAACTTAAAAT
128 AGTCTATTTTAAGAAAAAATATAAAAAATTCAACTTAAAAT
* * * * * * * **
46133 CAATTACGAGATTATAAAACCATTTTAAGCGAGTAATAAGGGTTTTGAAGGAATGGGTGAAAATA
1 TAATTATGAGATTATAAAACCATTTAAAG-GAATAATAAGGCTTTTGAAGGAATGAGAGACTATA
* *
46198 AATGGACTTTTTTTCTAAATAAAT-GTATTTTTTTACACATTG-CTCGAGACAGGCATTCAACTA
65 AATGGACTTTTTTTC-AAATAAATAG-ATTTTTCTACACATTGCCT-GAGACAAGCATTCAACTA
* * *
46261 TAGTCTATTTTAATAAAAAATATAAACGAATTTAACTTAAAAT
127 TAGTCTATTTTAAGAAAAAATATAAA-AAATTCAACTTAAAAT
* * *
46304 TAATTATGACATTATAAAACCATTTAAAGTGAATAATAAAGCTTTTGAAGGAACGAGAGACTATA
1 TAATTATGAGATTATAAAACCATTTAAAG-GAATAATAAGGCTTTTGAAGGAATGAGAGACTATA
** * * * * ** * ** * * *
46369 AATTTACTTTTTTTTACCATTGAAT-GTATTTTTCTTCATGTT-TCTCGAGGTAAACATACAATT
65 AATGGAC-TTTTTTT-CAAATAAATAG-ATTTTTCTACACATTGCCT-GAGACAAGCATTCAACT
* * *
46432 ATTATTCGT-TTTAAATAAAAAAGTA-AAAAAATTCAACTTAAAAT
126 A-TAGTC-TATTTTAAGAAAAAA-TATAAAAAATTCAACTTAAAAT
* ********** * *
46476 CAATTATGAGNNNNNNNNNNCATTTAAAGCGAATAATAAGACTTTTGAAGGAATGAGAGGCTATA
1 TAATTATGAGATTATAAAACCATTTAAAG-GAATAATAAGGCTTTTGAAGGAATGAGAGACTATA
* * * * *
46541 AATGGGCTTTTCTTTCAAATAAATCGGTTTTTCTACATC-TCT-CCTAAGGCAAGCATTCAA-TA
65 AATGGACTTTT-TTTCAAATAAATAGATTTTTCTACA-CAT-TGCCTGAGACAAGCATTCAACT-
* * * **********
46603 ATAGCCTGTTTTAATG-AAAAATGTAAAANNNNNNNNNNAAAAT
126 ATAGTCTATTTTAA-GAAAAAATATAAAAAATTCAACTTAAAAT
* **
46646 TAATTATGAGATTAT-AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAAAATG-GAAGACTAT
1 TAATTATGAGATTATAAAACCATTTAAAG-GAATAATAAGGCTTTTGAAGGAATGAG-AGACTAT
46709 AAATGGACTTTTT
64 AAATGGACTTTTT
46722 CTGCCAATGA
Statistics
Matches: 449, Mismatches: 119, Indels: 44
0.73 0.19 0.07
Matches are distributed among these distances:
168 2 0.00
169 56 0.12
170 144 0.32
171 110 0.24
172 114 0.25
173 20 0.04
174 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.34
Consensus pattern (168 bp):
TAATTATGAGATTATAAAACCATTTAAAGGAATAATAAGGCTTTTGAAGGAATGAGAGACTATAA
ATGGACTTTTTTTCAAATAAATAGATTTTTCTACACATTGCCTGAGACAAGCATTCAACTATAGT
CTATTTTAAGAAAAAATATAAAAAATTCAACTTAAAAT
Found at i:47565 original size:171 final size:171
Alignment explanation
Indices: 47350--47785 Score: 473
Period size: 171 Copynumber: 2.5 Consensus size: 171
47340 NNNNNNNNNN
*
47350 CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGCGACTATAAATAGACTTCTT-TTCCTAA
1 CATTTAAAGCGAGTAATAAGGCTTTTGAA-GAATGGGTGACTATAAATAGACTT-TTCTTCCTAA
* * * * * *
47414 TGAATGCCTTTTTCTTCAAGTTTCTCGAGGTAGACAATCAATTATAGTGTATTTTAATGAGAAAT
64 TGAATACCTTTTTCTTCAAGTTTCTCGAGGTAGACAATCAATTATAATCTATTTTAATCAAAAAA
**********
47479 GTAAAAA-AATTCAACTTAAAATNNNNNNNNNNATTATAAAAC
129 GTAAAAACAATTCAACTTAAAATCAATGTTGAGATTATAAAAC
* * * * * *
47521 CATTTAAAGCGAGCAACAAGGCTTTTGATAGAACGGGTGACTATAAATGGACTTTTCTTGCGAAT
1 CATTTAAAGCGAGTAATAAGGCTTTTGA-AGAATGGGTGACTATAAATAGACTTTTCTTCCTAAT
* * * * * *
47586 GAATACTTTTTTTTTCATGTTTCTAC-AGGTAGACATTGAATTATAATCTGTTTTAATCAAAAAA
65 GAATACCTTTTTCTTCAAGTTTCT-CGAGGTAGACAATCAATTATAATCTATTTTAATCAAAAAA
* *
47650 GTAAAAACAATTGAATTTAAAATCAATGTTGAGATTATAAAAC
129 GTAAAAACAATTCAACTTAAAATCAATGTTGAGATTATAAAAC
* * * *
47693 TATTTAAAGCGAGTAATAAGGCTGTTGAAGAAATGGGTGGCTATAAATAGACTTTTCTTCTTAAT
1 CATTTAAAGCGAGTAATAAGGCTTTTGAAG-AATGGGTGACTATAAATAGACTTTTCTTCCTAAT
* *
47758 GAATACCTTTCTCTTCACGTTTCTCGAG
65 GAATACCTTTTTCTTCAAGTTTCTCGAG
47786 TTAGNNNNNN
Statistics
Matches: 214, Mismatches: 45, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
170 2 0.01
171 113 0.53
172 99 0.46
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.34
Consensus pattern (171 bp):
CATTTAAAGCGAGTAATAAGGCTTTTGAAGAATGGGTGACTATAAATAGACTTTTCTTCCTAATG
AATACCTTTTTCTTCAAGTTTCTCGAGGTAGACAATCAATTATAATCTATTTTAATCAAAAAAGT
AAAAACAATTCAACTTAAAATCAATGTTGAGATTATAAAAC
Found at i:48799 original size:340 final size:336
Alignment explanation
Indices: 48453--49539 Score: 882
Period size: 340 Copynumber: 3.2 Consensus size: 336
48443 NNNNNNNNNC
* * * ** *
48453 TTCAATTGTAGTCTGCTTTAACAAAAAATACAAAAAATTCAACTTAATATCACA-TATGAGATTA
1 TTCAATTATAGTCTGTTTTAACAAAAAATA-AAAAAATTAAAAATAAAATCA-ATTATGAGATTA
*
48517 TAAAACTATTTAAAGTGAGTAATAACACTTTGAAGGAATGCG-TGACTATAAATGGACTTTTTTT
64 TAAAACTATTTAAAGTGAGTAATAACACTTTGAAGGAATG-GATGACTATAAATGGACTTTTCTT
* * * * *
48581 ACCAATAAATACCTTTCTCTTCACGTTTATTAACATAGACATTCAATTATAGTCTGTTTCAACTA
128 -CCAATGAATACCTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTCTGTTTCAACTA
48646 AAAATGTAAAAACATTGAACTTAAAATCAATTATGAGATTATAAAACAACTTAAAGTGAGCAATA
192 AAAATGTAAAAA-ATTGAACTTAAAATCAATTATGAGATTATAAAACAACTTAAAGTGAGCAATA
* * * * *
48711 GGGCTTTTG-AAGAAATGAGAGACTATAAATGGACT-TTT-TTTCTAAGTAAATGGGTTTTTCTA
256 AGGCTTTTGAAAG-AATAAGAGACTAT-AATGGA-TATTTCTTGCCAA-TAAATGGATTTTTCTA
* * *
48773 TATATTTCCTAG-GGTGGGCA
317 CACATTT-CTAGAGGTGGACA
* * **********
48793 TTCAATTATAGTCTGTTTTAAGAAAAAATGTAAANNNNNNNNNNTAAAATCAATTATGAGATTAT
1 TTCAATTATAGTCTGTTTTAACAAAAAAT-AAAAAAATTAAAAATAAAATCAATTATGAGATTAT
* * * * *
48858 AAAACTGTTTAAAGAGAGTAAAAATACCTTTGAAGGAATGGATGAATATAAATGGACTTTTCTTC
65 AAAACTATTTAAAGTGAGTAATAACA-CTTTGAAGGAATGGATGACTATAAATGGACTTTTCTTC
* * * * * * * * **
48923 CTAATGAATGCCTTTTTCTACACATTTCTCAATATAAATAATCAATTATAGTTTGTTTTAACCGA
129 C-AATGAATACCTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTCTGTTTCAACTAA
* * * * * * *
48988 AAATGTAAAAAAAATCAACTTAAAATCAATTATGAGGTTGTAAAACCATTTAAAGTGAGGAATAA
193 AAATGT-AAAAAATTGAACTTAAAATCAATTATGAGATTATAAAACAACTTAAAGTGAGCAATAA
* * ** *
49053 GGCTTTTGAAAGAATAAGTGACTATAATGGATATTTCTTGCCAATGAATTTATTTTTCTACACGT
257 GGCTTTTGAAAGAATAAGAGACTATAATGGATATTTCTTGCCAATAAATGGATTTTTCTACACAT
*
49118 TTCTTGAGGTGGACA
322 TTCTAGAGGTGGACA
* ** * * *
49133 TTCAATTATAGTTTGTTTTAACCCAAACTGAAAAAAATTAAAAATAAAATCAATTTTGAGATAAT
1 TTCAATTATAGTCTGTTTTAACAAAAAAT-AAAAAAATTAAAAATAAAATCAATTATGAGATTAT
* * * ** *
49198 TAAACCATTTAAAGT-AGGCAATAAGGCTTTTGAACGAATGGATGACTATAAATGGACTTTTCTT
65 AAAACTATTTAAAGTGA-GTAATAACAC-TTTGAAGGAATGGATGACTATAAATGGACTTTTCTT
* * * *
49262 GCCAATGAATACCTTTTTCTTCACGGTTCTCAATGTAGACATTCAATAATAATCTG-TTCTAA-T
128 -CCAATGAATACCTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTCTGTTTC-AACT
* * *********** *
49325 CAAAAAAGTAAAAGTAATTGAATTTAAAATCAATTATGAGATTATAAAACCNNNNNNNNNNAGTA
191 -AAAAATGTAAAA--AATTGAACTTAAAATCAATTATGAGATTATAAAACAACTTAAAGTGAGCA
* * * * * * **
49390 ATAAGGCATTTGAAGGAATGAGAGACTATAAACGGACT-TCTCTTGCCAATGAATGCTTTTTTCT
253 ATAAGGCTTTTGAAAGAATAAGAGACTAT-AATGGA-TATTTCTTGCCAATAAATGGATTTTTCT
* ** * * **
49454 TCATGTTTCTCGAAGTACACA
316 ACACATTTCTAGAGGTGGACA
* **
49475 TTCAATTATAGTCTGTTTTAA-ATAAAAATATAAAAATATTCAACTTAAAATCAATTATGAGATT
1 TTCAATTATAGTCTGTTTTAACA-AAAAATA-AAAAA-ATTAAAAATAAAATCAATTATGAGATT
49539 A
63 A
49540 NNNNNNNNNN
Statistics
Matches: 585, Mismatches: 140, Indels: 41
0.76 0.18 0.05
Matches are distributed among these distances:
339 13 0.02
340 251 0.43
341 218 0.37
342 79 0.14
343 24 0.04
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34
Consensus pattern (336 bp):
TTCAATTATAGTCTGTTTTAACAAAAAATAAAAAAATTAAAAATAAAATCAATTATGAGATTATA
AAACTATTTAAAGTGAGTAATAACACTTTGAAGGAATGGATGACTATAAATGGACTTTTCTTCCA
ATGAATACCTTTTTCTTCACGTTTCTCAATATAGACATTCAATTATAGTCTGTTTCAACTAAAAA
TGTAAAAAATTGAACTTAAAATCAATTATGAGATTATAAAACAACTTAAAGTGAGCAATAAGGCT
TTTGAAAGAATAAGAGACTATAATGGATATTTCTTGCCAATAAATGGATTTTTCTACACATTTCT
AGAGGTGGACA
Found at i:49101 original size:170 final size:170
Alignment explanation
Indices: 48507--49539 Score: 537
Period size: 170 Copynumber: 6.1 Consensus size: 170
48497 TAATATCACA
* * ** *
48507 TATGAGATTATAAAACTATTTAAAGTGAGTAATAACAC-TTTGAAGGAATGCG-TGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAGAATG-GATGACTATAAAT
* * * * * * * * * * *
48570 GGACTTTTTTTACCAATAAATACCTTTCTCTTCACGTTTATTAACATAGACATTCAATTATAGTC
65 GGACTTTTCTTGCCAATGAATACCTTTTTCTACACGTTTCTCAATATAAACAATCAATTATAGTT
* ** * * * **
48635 TGTTTCAACTAAAAATGTAAAAACATTGAACTTAAAATCAAT
130 TGTTTTAACCCAAAATG-AAAAAAAATAAAAATAAAATCAAT
* * * *
48677 TATGAGATTATAAAACAACTTAAAGTGAGCAATAGGGCTTTTG-AAGAAATGAGA-GACTATAAA
1 TATGAGATTATAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAG-AATG-GATGACTATAAA
* * * *** * ** *** *** *
48740 TGGACTTTT-TTTCTAAGTAAATGGGTTTTTCTATATATTTC-CTAGGGTGGGCATTCAATTATA
64 TGGACTTTTCTTGCCAA-TGAATACCTTTTTCTACACGTTTCTC-AATATAAACAATCAATTATA
* *** * **********
48803 GTCTGTTTTAAGAAAAAATGTAAANNNNNNNNNNTAAAATCAAT
127 GTTTGTTTTAACCCAAAATGAAAAAAAATAAAAATAAAATCAAT
** * * * ** * * *
48847 TATGAGATTATAAAACTGTTTAAAGAGAGTAAAAATACCTTTGAAGGAATGGATGAATATAAATG
1 TATGAGATTATAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAGAATGGATGACTATAAATG
* * *
48912 GACTTTTCTT-CCTAATGAATGCCTTTTTCTACACATTTCTCAATATAAATAATCAATTATAGTT
66 GACTTTTCTTGCC-AATGAATACCTTTTTCTACACGTTTCTCAATATAAACAATCAATTATAGTT
* * **
48976 TGTTTTAACCGAAAATGTAAAAAAAATCAACTTAAAATCAAT
130 TGTTTTAACCCAAAATG-AAAAAAAATAAAAATAAAATCAAT
* * *
49018 TATGAGGTTGTAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAGAAT-AAGTGACTAT-AAT
1 TATGAGATTATAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAGAATGGA-TGACTATAAAT
*** ** ** ** *
49081 GGA-TATTTCTTGCCAATGAATTTATTTTTCTACACGTTTCTTGAGGTGGACATTCAATTATAGT
65 GGACT-TTTCTTGCCAATGAATACCTTTTTCTACACGTTTCTCAATATAAACAATCAATTATAGT
* *
49145 TTGTTTTAACCCAAACTGAAAAAAATTAAAAATAAAATCAAT
129 TTGTTTTAACCCAAAATGAAAAAAAATAAAAATAAAATCAAT
* * * *
49187 TTTGAGATAATTAAACCATTTAAAGT-AGGCAATAAGGCTTTTGAACGAATGGATGACTATAAAT
1 TATGAGATTATAAAACCATTTAAAGTGAGG-AATAAGGCTTTTGAAAGAATGGATGACTATAAAT
* * * * * * * *
49251 GGACTTTTCTTGCCAATGAATACCTTTTTCTTCACGGTTCTCAATGTAGACATTCAATAATAATC
65 GGACTTTTCTTGCCAATGAATACCTTTTTCTACACGTTTCTCAATATAAACAATCAATTATAGTT
* * * * * * * **
49316 TGTTCTAATCAAAAAAGTAAAAGTAATTGAATTTAAAATCAAT
130 TGTTTTAACCCAAAATG-AAAA-AAAATAAAAATAAAATCAAT
********** * * * *
49359 TATGAGATTATAAAACCNNNNNNNNNNAGTAATAAGGCATTTGAAGGAATGAGA-GACTATAAAC
1 TATGAGATTATAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAGAATG-GATGACTATAAAT
* * * * * * * *
49423 GGACTTCTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTCGAA-GTACACATTCAATTATAGT
65 GGACTTTTCTTGCCAATGAATACCTTTTTCTACACGTTTCTC-AATATAAACAATCAATTATAGT
* *** * * **
49487 CTGTTTTAAATAAAAAT-ATAAAAATATTCAACTTAAAATCAAT
129 TTGTTTTAACCCAAAATGA-AAAAA-AATAAAAATAAAATCAAT
49530 TATGAGATTA
1 TATGAGATTA
49540 NNNNNNNNNN
Statistics
Matches: 668, Mismatches: 170, Indels: 49
0.75 0.19 0.06
Matches are distributed among these distances:
168 3 0.00
169 70 0.10
170 290 0.43
171 175 0.26
172 124 0.19
173 6 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (170 bp):
TATGAGATTATAAAACCATTTAAAGTGAGGAATAAGGCTTTTGAAAGAATGGATGACTATAAATG
GACTTTTCTTGCCAATGAATACCTTTTTCTACACGTTTCTCAATATAAACAATCAATTATAGTTT
GTTTTAACCCAAAATGAAAAAAAATAAAAATAAAATCAAT
Found at i:49436 original size:172 final size:161
Alignment explanation
Indices: 49217--49539 Score: 348
Period size: 172 Copynumber: 1.9 Consensus size: 161
49207 TAAAGTAGGC
* * *
49217 AATAAGGCTTTTGAACGAATGGATGACTATAAATGGACTTTTCTTGCCAATGAATACCTTTTTCT
1 AATAAGGCATTTGAACGAATGGATGACTATAAACGGACTTCTCTTGCCAATGAATACCTTTTTCT
* *
49282 TCACGGTTCTC-AATGTAGACATTCAATAATAATCTGTTCT-AATCAAAAA-AGTAAAAGTAATT
66 TCACGGTTCTCGAA-GTACACATTCAATAATAATCTGTTCTAAAT-AAAAATA-TAAAAAT-ATT
* *
49344 GAATTTAAAATCAATTATGAGATTATAAAACCNNNNNNNNNNAGT
127 CAACTTAAAATCAATTATGAGATTATAAAACC----------AGT
* * *
49389 AATAAGGCATTTGAAGGAATGAGA-GACTATAAACGGACTTCTCTTGCCAATGAATGCTTTTTTC
1 AATAAGGCATTTGAACGAATG-GATGACTATAAACGGACTTCTCTTGCCAATGAATACCTTTTTC
* * * * *
49453 TTCATGTTTCTCGAAGTACACATTCAATTATAGTCTGTTTTAAATAAAAATATAAAAATATTCAA
65 TTCACGGTTCTCGAAGTACACATTCAATAATAATCTGTTCTAAATAAAAATATAAAAATATTCAA
49518 CTTAAAATCAATTATGAGATTA
130 CTTAAAATCAATTATGAGATTA
49540 NNNNNNNNNN
Statistics
Matches: 132, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
171 26 0.20
172 98 0.74
173 8 0.06
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.33
Consensus pattern (161 bp):
AATAAGGCATTTGAACGAATGGATGACTATAAACGGACTTCTCTTGCCAATGAATACCTTTTTCT
TCACGGTTCTCGAAGTACACATTCAATAATAATCTGTTCTAAATAAAAATATAAAAATATTCAAC
TTAAAATCAATTATGAGATTATAAAACCAGT
Found at i:50419 original size:172 final size:169
Alignment explanation
Indices: 50044--50568 Score: 462
Period size: 172 Copynumber: 3.1 Consensus size: 169
50034 NNNNNNNNNT
** **
50044 TTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAAAGAGTAATAAGAATTTTGAAGGAA
1 TTAACTTAAAATCAATT-TGAGATTATAAAACCATTTAAAGCGAGTAATAAG-GCTTTGAAGGAA
* * *
50109 TGGGTGACTATAATTAGTCTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCACCAGGTAGA
64 TGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCACCAAGTAGA
* *
50174 CATTCAATTAAAATATGTTTTAACCAAAAATGTAGAAACAA
129 CAATCAATTAAAATATGTTTTAACAAAAAATGTAGAAACAA
********* *
50215 TTGAACTTANNNNNNNNNNTGAGATCATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGA
1 TT-AACTTA-AAATCAATTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-GAAGGA
* * ********** * ***
50280 ATGGGTGAATATAAATGGACTTNNNNNNNNNNTGAATGCCTTTTTCTTCATGTTTTTTCAAGTAG
63 ATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCACCAAGTAG
* *
50345 ACAATCAATTATAATATGTTTTAATAAAAAATGTAGAAACAA
128 ACAATCAATTAAAATATGTTTTAACAAAAAATGTAGAAACAA
* *
50387 GTTAACTTAAAATCAATGTTGAGATTATAAAACTATTTAAAGCGAGTAATAAAGCTTTGAAAGGA
1 -TTAACTTAAAATCAAT-TTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTG-AAGGA
* *** * *
50452 ATAGGTGACTATAAATAGACTTTTCTT-CCTAATGAATGTATTTTTCTTCACGTTTC-TCAAGGT
63 ATGGGTGACTATAAATAGACTTTTCTTGCC-AATGAATACCTTTTTCTTCATGTTTCACCAA-GT
* ** * * * *
50515 TGACGTTCAATTATAGTTTGTTTTAACAAAAAATGTA-AAAAAA
126 AGACAATCAATTAAAATATGTTTTAACAAAAAATGTAGAAACAA
50558 TTCAACTTAAA
1 TT-AACTTAAA
50569 NNNNNNNNNN
Statistics
Matches: 273, Mismatches: 72, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
170 2 0.01
171 23 0.08
172 246 0.90
173 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.34
Consensus pattern (169 bp):
TTAACTTAAAATCAATTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTGAAGGAATG
GGTGACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCACCAAGTAGACA
ATCAATTAAAATATGTTTTAACAAAAAATGTAGAAACAA
Found at i:51914 original size:172 final size:171
Alignment explanation
Indices: 51539--51932 Score: 424
Period size: 172 Copynumber: 2.3 Consensus size: 171
51529 NNNNNNNNNN
51539 AATGGTTTTATAATCTCAACATTGATTTTAAGTTAAATTGTTTCTACA-TTTTTGATTAAAACAT
1 AATGGTTTTATAATCTCAA-ATTGATTTTAAGTTAAATTGTTTCTACATTTTTTGATTAAAACAT
* * * *
51603 ATTATAATTGATTGGCTATTGAAAAAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGTCCAT
65 ATTATAATTAAATGGCTATTGAAAAAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGACCAA
* *
51668 TTATATTCACCAATTCCTTCGAAAGTCTTATTACTCGCTTTA
130 TTATAGTCACCAATTCCTTCAAAAGTCTTATTACTCGCTTTA
* ********* *
51710 AATGGTTTTATGATCTNNNNNNNNNNTTTAAGTTCAATTGTTTCTACATTTTTTG-TTAAAACAT
1 AATGGTTTTATAATCT-CAAATTGATTTTAAGTTAAATTGTTTCTACATTTTTTGATTAAAACAT
* * ** * * * *
51774 ATTTTAATTAAATGTCTACCTTG-TGAAACATGAAGAAAACGGTATTCATTGGCAAGAAAAGACT
65 ATTATAATTAAATGGCTA--TTGAAAAAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGACC
* *
51838 AATTATAGTCACTC-ATTCCTTCAAAATTCTTATTACTC-TTTCTA
128 AATTATAGTCAC-CAATTCCTTCAAAAGTCTTATTACTCGCTT-TA
*
51882 AATGGTTTTATAATCTCGTAATTGATTTTAAGTTAAATT-TTT-TACATTTTT
1 AATGGTTTTATAATCTC-AAATTGATTTTAAGTTAAATTGTTTCTACATTTTT
51933 CNNNNNNNNN
Statistics
Matches: 178, Mismatches: 38, Indels: 15
0.77 0.16 0.06
Matches are distributed among these distances:
170 9 0.05
171 64 0.36
172 101 0.57
173 4 0.02
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.41
Consensus pattern (171 bp):
AATGGTTTTATAATCTCAAATTGATTTTAAGTTAAATTGTTTCTACATTTTTTGATTAAAACATA
TTATAATTAAATGGCTATTGAAAAAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGACCAAT
TATAGTCACCAATTCCTTCAAAAGTCTTATTACTCGCTTTA
Found at i:54177 original size:172 final size:172
Alignment explanation
Indices: 53783--54623 Score: 743
Period size: 172 Copynumber: 4.9 Consensus size: 172
53773 AAAGGTATTC
* **
53783 ATTGGTAAAAAAAGTCCATTTATAGTCACCCATTCCTTC-AAAGTGTTATTACTCACTTTAAATG
1 ATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATG
* * ** * *
53847 GTTTTATAATCTCATAAGTGATATTAAGTTGAATTTTT-TGTATTTTTTGTTAAAGCAGACTACA
66 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTATACATTTTTTGTTAAAACAGACTATA
* * * *
53911 ATTGAAGGCCTACCAT-GAGAAAGGTGTAG-AAAAACCCATTT
131 ATTGAATGTCTACC-TCGAGAAACGTGTAGAAAAAAGCCATTT
* ** * * * * *
53952 CTTTTTTAAAAAAAGTCCATTTATAGTCACCTATTCCTTTAAAAGCTTTATTACACACTTTAAAT
1 -ATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
* * * * * * *
54017 GGTTTTATAATATCAAAATTGATTTTAAGTTCAATTATTTATACATTTTTTATTAAAATATATTA
65 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTATACATTTTTTGTTAAAACAGACTA
* * * **
54082 TAATTGAATATTTACCTCGTGAAACGTG-AGAAAAAAGGTATTT
129 TAATTGAATGTCTACCTCGAGAAACGTGTAGAAAAAAGCCATTT
* ** *
54125 ATTGGTAAGAAAAG-CCTAGTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTTGCTTTCAAT
1 ATTGGTAAGAAAAGTCC-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
* **
54189 GGTTTTATAATCTTATAATTGATTTT-AGATTGAATTTTTA-ACATTTTTCATTAAAACAGACTA
65 GGTTTTATAATCTCATAATTGATTTTAAG-TTGAATTTTTATACATTTTTTGTTAAAACAGACTA
* * * *** * *
54252 TAATTGAATTTCTATCTCGGGATGTGTGTAGAAAAAATCCAATT
129 TAATTGAATGTCTACCTCGAGAAACGTGTAGAAAAAAGCCATTT
* * * ** * * * * *
54296 ATTTGG-AGGAAAAGTCCATTTATAGCCTCTTATTCTTTCAAAATCCTTATTACCCTCTTTAAAC
1 A-TTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
* * * * ** * * *
54360 GATTTTACT-ATCTCAAAATTAATTTTATGCTCAAATTTTTTTTACATTTTTGGTTAAAATAGAC
65 GGTTTTA-TAATCTCATAATTGATTTTAAG-TTGAA-TTTTTATACATTTTTTGTTAAAACAGAC
* ** * * * * * *
54424 TATAATTAAACCTATACCTTGAGAAACCTGAAGAAAAAA-ACATTC
127 TATAATTGAATGTCTACCTCGAGAAACGTGTAGAAAAAAGCCATTT
* ** * **
54469 ATTGGTACGAAAAGTCCATTTATAGTGTCTCATTCCTTC-AAAGCCTTATTACTTGCTTTAAATG
1 ATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATG
* * *
54533 GTTTTATAATCTCATAATTGATGTCAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGACTATA
66 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTATACATTTTTTGTTAAAACAGACTATA
*
54598 ATTGAATGTCTAACTCGAGAAACGTG
131 ATTGAATGTCTACCTCGAGAAACGTG
54624 AAGAGAAAGG
Statistics
Matches: 527, Mismatches: 128, Indels: 32
0.77 0.19 0.05
Matches are distributed among these distances:
170 123 0.23
171 138 0.26
172 139 0.26
173 82 0.16
174 45 0.09
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (172 bp):
ATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATG
GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTATACATTTTTTGTTAAAACAGACTATA
ATTGAATGTCTACCTCGAGAAACGTGTAGAAAAAAGCCATTT
Found at i:54514 original size:343 final size:342
Alignment explanation
Indices: 53779--54619 Score: 933
Period size: 343 Copynumber: 2.5 Consensus size: 342
53769 AGAGAAAGGT
* ** **
53779 ATTCATTGGTAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAGTGTTATTACTCACTTTAA
1 ATTCATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAGCCTTATTACTTGCTTTAA
* ** *
53844 ATGGTTTTATAATCTCATAAGTGATATTAAGTTGAATTTTTTGTATTTTTTGTTAAAGCAGACTA
66 ATGGTTTTATAATCTCATAATTGATATTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGACTA
* * * * * * **
53909 CAATTGAAGGCCTACCAT-GAGAAAGGTGTAGAAAAACCCATTTCTTTTTTAAAAAAAGTCCATT
131 TAATTGAATGTCTAAC-TCGAGAAAGGTGTAGAAAAACCCAATTCATTTGGAAAAAAAGTCCATT
* * * * *
53973 TATAGTCACCTATTCCTTTAAAAGCTTTATTACACACTTTAAATGGTTTTATAATATCAAAATTG
195 TATAGCCACCTATTCCTTTAAAAGCCTTATTACACACTTTAAACGATTTTATAATATCAAAATTA
* * * * * * * *
54038 ATTTTAAGTTCAATTATTTATACATTTTTTATTAAAATATATTATAATTGAATATTTACCTCGTG
260 ATTTTAAGCTCAATTATTTATACATTTTTGATTAAAATAGACTATAATTAAACATATACCTCGAG
* **
54103 AAACGTGAGAAAAAAGGT
325 AAACCTGAGAAAAAAGAC
* *
54121 ATTTATTGGTAAGAAAAG-CCTAGTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTTGCTTT
1 ATTCATTGGTAAGAAAAGTCC-ATTTATAGTCACCCATTCCTTC-AAAGCCTTATTACTTGCTTT
* * * * **
54185 CAATGGTTTTATAATCTTATAATTGAT-TTTAGATTGAATTTTTAACATTTTTCATTAAAACAGA
64 AAATGGTTTTATAATCTCATAATTGATATTAAG-TTGAATTTTTTACATTTTTTGTTAAAACAGA
* * * * * **
54249 CTATAATTGAATTTCTATCTCG-GGATGTGTGTAGAAAAAATCCAATT-ATTTGGAGGAAAAGTC
128 CTATAATTGAATGTCTAACTCGAGAAAG-GTGTAG-AAAAACCCAATTCATTTGGAAAAAAAGTC
* * * * * *
54312 CATTTATAGCCTCTTATT-CTTTCAAAATCCTTATTACCCTCTTTAAACGATTTTACT-ATCTCA
191 CATTTATAGCCACCTATTCCTTT-AAAAGCCTTATTACACACTTTAAACGATTTTA-TAATATCA
* * * * *
54375 AAATTAATTTTATGCTCAAATTTTTTTTACATTTTTGGTTAAAATAGACTATAATTAAACCTATA
254 AAATTAATTTTAAGCTC-AATTATTTATACATTTTTGATTAAAATAGACTATAATTAAACATATA
*
54440 CCTTGAGAAACCTGAAGAAAAAA-AC
318 CCTCGAGAAACCTG-AGAAAAAAGAC
* ** *
54465 ATTCATTGGTACGAAAAGTCCATTTATAGTGTCTCATTCCTTCAAAGCCTTATTACTTGCTTTAA
1 ATTCATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAGCCTTATTACTTGCTTTAA
* *
54530 ATGGTTTTATAATCTCATAATTGATGTCAAGTTGAATTTTTTTACATTTTTTGTTAAAACAGACT
66 ATGGTTTTATAATCTCATAATTGATATTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGACT
54595 ATAATTGAATGTCTAACTCGAGAAA
130 ATAATTGAATGTCTAACTCGAGAAA
54620 CGTGAAGAGA
Statistics
Matches: 409, Mismatches: 76, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
341 2 0.00
342 49 0.12
343 207 0.51
344 139 0.34
345 12 0.03
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (342 bp):
ATTCATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAGCCTTATTACTTGCTTTAA
ATGGTTTTATAATCTCATAATTGATATTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGACTA
TAATTGAATGTCTAACTCGAGAAAGGTGTAGAAAAACCCAATTCATTTGGAAAAAAAGTCCATTT
ATAGCCACCTATTCCTTTAAAAGCCTTATTACACACTTTAAACGATTTTATAATATCAAAATTAA
TTTTAAGCTCAATTATTTATACATTTTTGATTAAAATAGACTATAATTAAACATATACCTCGAGA
AACCTGAGAAAAAAGAC
Found at i:55446 original size:341 final size:332
Alignment explanation
Indices: 55062--55723 Score: 749
Period size: 341 Copynumber: 2.0 Consensus size: 332
55052 CATTTAAAGT
* * * *
55062 GAGTAATAAGGCTTTTGAAGGAATGGATGAATATAAGTGGACTTTTTTTACCAATGAATACCTTT
1 GAGTAATAAAGCTTTTGAAAGAATCGATGAATATAAATGGACTTTTTTTACCAATGAATACCTTT
* * *
55127 TTCTTTATGTT-TTTTCAGGTAGACAATCAATTATAATATGTTTTAACTAAAAATGTAGAAACAA
66 TTCTTCATGTTCTTTT-AGGTAGACAATCAATTATAATATGTTTTAACTAAAAATG-AAAAAAAA
* * * ********** **
55191 TTTAACTTAAAATCAATGTTGAGNNNNNNNNNNCATTTAAAGCGAGTAATAAG-GCTTTAGAAGG
129 ATGAACTTAAAACCAATGTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGAG-TTTAGAAAA
* ** *
55255 AATGGGTAACTATAAATAGACTTTCTTCCT-AATGAATGTTTTTTTCTTCATGTTTCTCAAGGTT
193 AATGGGTAACTATAAATAGACTTTCTTCCTCAATAAATGACTTTTTCTTCATGTTTCTCAAGGTA
* * * * *
55319 GACATTCAATAATAGTCTGTTTTAACGAGAAATGT-AAAAAATTAAATTTAAAATCAATTATGAG
258 GACATTCAATAATAGTATGTTTTAACAAAAAATATAAAAAAATTAAACTTAAAATCAATTATGAG
55383 ATTATAAAAC
323 ATTATAAAAC
* * *
55393 NNNNNNNNNNGAGTAATAAAGCTTTTGAAATAATACG-TGACTATAAATGGACTTTTTTTGCCAA
1 ----------GAGTAATAAAGCTTTTGAAAGAAT-CGATGAATATAAATGGACTTTTTTTACCAA
*
55457 TGAATACCTTTTTCTTCATGTTCTTTTAGGTAGACAATCAATTATAATTTGTTTTAACTAAAAAT
55 TGAATACCTTTTTCTTCATGTTCTTTTAGGTAGACAATCAATTATAATATGTTTTAACTAAAAAT
* *
55522 GAAAAAAAAATGAACTTAAAACCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGAGT
120 GAAAAAAAAATGAACTTAAAACCAATGTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGAGT
* * * *
55587 TTTGAAAAAATGGGTGACTATAAATAGACTTTTTTTCTCAATAAATGACTTTTTCTTCATGTTTC
185 TTAGAAAAAATGGGTAACTATAAATAGACTTTCTTCCTCAATAAATGACTTTTTCTTCATGTTTC
* * * * *
55652 TCGAGGTAGACATTCAATTATAGTATGTTTTCACAAAAAATATAAAAAAATTTAACTTAAAATCG
250 TCAAGGTAGACATTCAATAATAGTATGTTTTAACAAAAAATATAAAAAAATTAAACTTAAAATCA
55717 ATTATGA
315 ATTATGA
55724 NNNNNNNNNN
Statistics
Matches: 270, Mismatches: 46, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
340 77 0.29
341 163 0.60
342 30 0.11
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.36
Consensus pattern (332 bp):
GAGTAATAAAGCTTTTGAAAGAATCGATGAATATAAATGGACTTTTTTTACCAATGAATACCTTT
TTCTTCATGTTCTTTTAGGTAGACAATCAATTATAATATGTTTTAACTAAAAATGAAAAAAAAAT
GAACTTAAAACCAATGTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGAGTTTAGAAAAAAT
GGGTAACTATAAATAGACTTTCTTCCTCAATAAATGACTTTTTCTTCATGTTTCTCAAGGTAGAC
ATTCAATAATAGTATGTTTTAACAAAAAATATAAAAAAATTAAACTTAAAATCAATTATGAGATT
ATAAAAC
Found at i:55592 original size:171 final size:170
Alignment explanation
Indices: 54914--55929 Score: 614
Period size: 171 Copynumber: 5.9 Consensus size: 170
54904 TTGAAGGAGC
* * * * * * **
54914 GGGTGACTATAATTAGTCTTTTCTTACCAATGAATGCCGTTTTT-TGCATGTTTCACGCGGTAGA
1 GGGTGACTATAAATAGACTTTT-TTTCCAATGAATACC-TTTTTCTTCATGTTTCTCTAGGTAGA
* * * * * * * ***
54978 CATTCAATTATAATATGTATTAACAAAAAATGTAGAAACAATTGAACTTAAAATCAATGTTGNNN
64 CAATCAATTATAATATGTTTTAACTAAAAATG-AAAAAAAATTTAACTTAAAATCAATTTTGAGA
******* *
55043 NNNNNNNACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAAT
128 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAAT
* * * * * *
55086 GGATGAATATAAGTGGACTTTTTTTACCAATGAATACCTTTTTCTTTATGTTT-TTTCAGGTAGA
1 GGGTGACTATAAATAGACTTTTTTT-CCAATGAATACCTTTTTCTTCATGTTTCTCT-AGGTAGA
* * * *
55150 CAATCAATTATAATATGTTTTAACTAAAAATGTAGAAACAATTTAACTTAAAATCAATGTTGAGN
64 CAATCAATTATAATATGTTTTAACTAAAAATG-AAAAAAAATTTAACTTAAAATCAATTTTGAGA
********* * * *
55215 NNNNNNNNNCATTTAAAGCGAGTAATAAGGCTTTAGAAGGAAT
128 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAAT
* * *** * *
55258 GGGTAACTATAAATAGAC-TTTCTTCCTAATGAATGTTTTTTTCTTCATGTTTCTCAAGGTTGAC
1 GGGTGACTATAAATAGACTTTTTTTCC-AATGAATACCTTTTTCTTCATGTTTCTCTAGGTAGAC
* * * * * * * * * *
55322 ATTCAATAATAGTCTGTTTTAACGAGAAATG-TAAAAAATTAAATTTAAAATCAATTATGAGATT
65 AATCAATTATAATATGTTTTAACTAAAAATGAAAAAAAATTTAACTTAAAATCAATTTTGAGATT
********** * *
55386 ATAAAACNNNNNNNNNNGAGTAATAAAGCTTTTGAAATAAT
130 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAAT
** * *
55427 ACGTGACTATAAATGGACTTTTTTTGCCAATGAATACCTTTTTCTTCATG-TTCTTTTAGGTAGA
1 GGGTGACTATAAATAGACTTTTTTT-CCAATGAATACCTTTTTCTTCATGTTTC-TCTAGGTAGA
* * * *
55491 CAATCAATTATAATTTGTTTTAACTAAAAATGAAAAAAAAATGAACTTAAAACCAATTTTGAGAT
64 CAATCAATTATAATATGTTTTAACTAAAAATGAAAAAAAATTTAACTTAAAATCAATTTTGAGAT
*
55556 TATAAAACCATTTAAAGTGAGTAATAAGAG-TTTTGAAAAAAT
129 TATAAAACCATTTAAAGTGAGTAATAAG-GCTTTTGAAAGAAT
* *
55598 GGGTGACTATAAATAGACTTTTTTTCTCAATAAATGA-CTTTTTCTTCATGTTTCTCGAGGTAGA
1 GGGTGACTATAAATAGACTTTTTTTC-CAATGAAT-ACCTTTTTCTTCATGTTTCTCTAGGTAGA
* * * * * * **
55662 CATTCAATTATAGTATGTTTTCACAAAAAAT-ATAAAAAAATTTAACTTAAAATCGATTATGANN
64 CAATCAATTATAATATGTTTTAACTAAAAATGA-AAAAAAATTTAACTTAAAATCAATTTTGAGA
******** * *
55726 NNNNNNNNCCATTTAAAGCGAGTAATATGGCTTTTG-AAGAAAT
128 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAG-AAT
* * * * * * * * * * *
55769 GAGAGAGTATAGATGGACTTTTCTTCTCAATGAATA-GTTTTTGTTATATATTTCT-TGGGGTAG
1 GGGTGACTATAAATAGACTTTTTTTC-CAATGAATACCTTTTTCTT-CATGTTTCTCT-AGGTAG
* * * ** ** * * *
55832 ACATTCAATTATAGTCTGTTTTAACTAAAAATGTCAAAAAATCCAACTTTAAATGAATTATGAGA
63 ACAATCAATTATAATATGTTTTAACTAAAAATGAAAAAAAATTTAACTTAAAATCAATTTTGAGA
* * * * *
55897 TTATAAAATCACTTAGAGTGAGCAATAACGCTT
128 TTATAAAACCATTTAAAGTGAGTAATAAGGCTT
55930 ATGGGAGACT
Statistics
Matches: 649, Mismatches: 176, Indels: 39
0.75 0.20 0.05
Matches are distributed among these distances:
169 61 0.09
170 72 0.11
171 358 0.55
172 158 0.24
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (170 bp):
GGGTGACTATAAATAGACTTTTTTTCCAATGAATACCTTTTTCTTCATGTTTCTCTAGGTAGACA
ATCAATTATAATATGTTTTAACTAAAAATGAAAAAAAATTTAACTTAAAATCAATTTTGAGATTA
TAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAAT
Found at i:62964 original size:170 final size:159
Alignment explanation
Indices: 62731--63054 Score: 271
Period size: 170 Copynumber: 2.0 Consensus size: 159
62721 AAAGTGTGTA
* * * * * *
62731 ATAAGGCTTTTGAAGGAATGAGTGATTATAAATAGATTTTTCTTTCAAATAAATAGGTTTTTC-T
1 ATAAAGCTTTTGAAGGAATGAGTAATTATAAATACACTTTTCTTGCAAATAAATAGCTTTTTCTT
* * *
62795 ACACGTTTCCTAGGGC-AGGCATTCAATTATAGTCTGTTTT-AATAAAA-GATATAAAAAAGTCA
66 AC-CATTT-CT-GGACAAGACATTCAATTATAGTCTGTTTTGAATAAAACG-TA-AAAAAAGTCA
* *
62857 ACTTAATATCACTTATGAGATTATAAAACCATTT
126 ACTTAAAATCAATTATGAGATTATAAAACCATTT
* * * *
62891 NNNNNNNNNNATAAAGCTTTTGAAGGAATGGGTAATTATAAATTCACTTTTCTTGCCAATGAAT-
1 ----------ATAAAGCTTTTGAAGGAATGAGTAATTATAAATACACTTTTCTTGCAAATAAATA
* * * *
62955 GCCTTTTTCTTTCCATTTCTTGACATAGACATTCAATTATAGTTTGTTTTGACTAAAACTGTAAA
56 G-CTTTTTCTTACCATTTCTGGACA-AGACATTCAATTATAGTCTGTTTTGAATAAAAC-GTAAA
*
63020 AAAATTCAACTTAAAATCAATTATGAGATTATAAA
118 AAAAGTCAACTTAAAATCAATTATGAGATTATAAA
63055 NNNNNNNNNN
Statistics
Matches: 127, Mismatches: 20, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
168 2 0.02
169 3 0.02
170 77 0.61
171 42 0.33
172 2 0.02
173 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.37
Consensus pattern (159 bp):
ATAAAGCTTTTGAAGGAATGAGTAATTATAAATACACTTTTCTTGCAAATAAATAGCTTTTTCTT
ACCATTTCTGGACAAGACATTCAATTATAGTCTGTTTTGAATAAAACGTAAAAAAAGTCAACTTA
AAATCAATTATGAGATTATAAAACCATTT
Found at i:63810 original size:171 final size:171
Alignment explanation
Indices: 63253--64081 Score: 513
Period size: 171 Copynumber: 4.9 Consensus size: 171
63243 NNNNNNNNNN
* * * **
63253 TTTAAGTTGAATTGTTTTACATTTTTTATCAAAACAAACTATAATTGAATGTCTATGTCAAGAAA
1 TTTAAGTTGAATTGTTTTACA-TTTTTATTAAAACAGACTATAATTGAATATCTACCTCAAGAAA
* * * * *
63318 CGT-AAAGAAAAAGGCATTCATTGGTAAGAAAAGTCCATTTATAATTACCTATTCCTTCAAAAGC
65 CATGAAAGAAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCAATTCCTTCAAAAGC
* * * *
63382 TTTATTACTCTCTTTAAATGGTTTTAGAATCTCATAAGTGAT
130 CTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGAT
* ********** * * **
63424 ATTAAGTNNNNNNNNNNATA-TTTTTTATTAAAACAGACTATAATTGAATGA-CTGCCTTGAGAA
1 TTTAAGT-TGAATTGTTTTACATTTTTATTAAAACAGACTATAATTGAAT-ATCTACCTCAAGAA
* ** * * * * * *
63487 ACATGTAA-AAAAACCCATTTATTTGAAAGAAAAATCTATTTATAGCCACCAATTCCTTCAAAAG
64 ACATGAAAGAAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCAATTCCTTCAAAAG
* * *
63551 -CTTATTACACACTTTAAATGATTTTATAATCTCAAAATTGAT
129 CCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGAT
* ********* * * * **
63593 TTTAAGTTCAATNNNNNNNNNNTTTTTGATTGAAATAGATTATAATTGAATATCTATGTCAAGAA
1 TTTAAGTTGAAT-TGTTTTACATTTTT-ATTAAAACAGACTATAATTGAATATCTACCTCAAGAA
* * * *
63658 ACATG-AAGAAAAAGTCATTCAATGGTAAGAAAAGTCTACTTATAGTCACCCATTCC-TCTAAAA
64 ACATGAAAGAAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCAATTCCTTC-AAAA
* * * *
63721 GCCTTATTACTCGCTTTAAATGGCTTTATAATGTCATAATTTAT
128 GCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGAT
* * *
63765 TTTAAGTAGAATTTTTTTACATTTTTAGTTAAAACAGACTATAATTGAATGTCTACCT-AATGAA
1 TTTAAGTTGAATTGTTTTACATTTTTA-TTAAAACAGACTATAATTGAATATCTACCTCAA-GAA
* * * *
63829 GCATGAAAAAAAAAGT-ATTTATTGGTAAGAAAAGTCCATTTATAGTC-TCATATTCCTTCAAAA
64 ACATGAAAGAAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCA-ATTCCTTCAAAA
********** ** *
63892 GNNNNNNNNNNCGTTTTAAATGGTTTTATAATATCATAATTGAT
128 GCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGAT
** * * * **
63936 TTTAAACTGAATTTTTTTACACTTTTGT-TTAAAACA-AATAATAATTGAATGTGC-ACCTTGAG
1 TTTAAGTTGAATTGTTTTACA-TTTT-TATTAAAACAGACT-ATAATTGAATAT-CTACCTCAAG
* * * * * * * *
63998 AAACGTG-AAGAAAATG-AATTTATTGGCAAGAAAAGT-CATTCATTGTCA-CATATTCCTACAA
62 AAACATGAAAGAAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCA-ATTCCTTCAA
*
64059 GAGCCTTATTACTCACTTTAAAT
126 AAGCCTTATTACTCACTTTAAAT
64082 AGTNNNNNNN
Statistics
Matches: 496, Mismatches: 140, Indels: 46
0.73 0.21 0.07
Matches are distributed among these distances:
169 76 0.15
170 122 0.25
171 233 0.47
172 64 0.13
173 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.36
Consensus pattern (171 bp):
TTTAAGTTGAATTGTTTTACATTTTTATTAAAACAGACTATAATTGAATATCTACCTCAAGAAAC
ATGAAAGAAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCAATTCCTTCAAAAGCC
TTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGAT
Found at i:64149 original size:49 final size:49
Alignment explanation
Indices: 64096--64201 Score: 151
Period size: 49 Copynumber: 2.2 Consensus size: 49
64086 NNNNNNNNNC
* * *
64096 ATAATTGATTTTAAGTTGAACTTTTTTAC-TTTCTTGGTTAAAACAGATT
1 ATAATTGATTTTAAGTTGAACTTTTTTACACTT-TTGGTTAAAACAAATA
* *
64145 ATAATTGATTTTAAGTTGAATTTTTTTACACTTTTGTTTAAAACAAATA
1 ATAATTGATTTTAAGTTGAACTTTTTTACACTTTTGGTTAAAACAAATA
64194 ATAATTGA
1 ATAATTGA
64202 ATGTGTACCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 49 0.96
50 2 0.04
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (49 bp):
ATAATTGATTTTAAGTTGAACTTTTTTACACTTTTGGTTAAAACAAATA
Found at i:65290 original size:13 final size:14
Alignment explanation
Indices: 65268--65301 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
65258 GTACCAATGA
65268 ATGTTTTTTTGTTC
1 ATGTTTTTTTGTTC
65282 ATGTTTTTTTGTTC
1 ATGTTTTTTTGTTC
65296 ATGTTT
1 ATGTTT
65302 CTCAAGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.09, C:0.06, G:0.15, T:0.71
Consensus pattern (14 bp):
ATGTTTTTTTGTTC
Found at i:67099 original size:171 final size:171
Alignment explanation
Indices: 66659--69028 Score: 1838
Period size: 171 Copynumber: 13.9 Consensus size: 171
66649 NNNNNNNNNN
* * * * ** **
66659 TGAAGGAATAAGTGACTAT-AACGGA-TATTTCTTGCCAATGAAT-TTATTTTTCTAGAGGTTTC
1 TGAAGGAATGAGTGACTATAAATGGACT-TTTCTTACCAATGAATGCT-TTTTTCTTCACATTTC
** * * * * **
66721 TTGAGGTAGACTTTCGATTATAGTCTGTTTTAATCAAAAA--TAAAAAAATTAAAAATAAAATCA
64 TCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA
* * * * *
66784 ATT-TTACGGTAATAAAACCATTTAAAGTGGGTAATAAGGCTTT
129 ATTATGA-GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
** * * * * * * *
66827 TGAACAAATGGGTGACTATAAATAGATTTTTTTTTACCAAAGAATG-TCCTTTTCTTCACGTTTC
1 TGAAGGAATGAGTGACTATAAATGGA-CTTTTCTTACCAATGAATGCT-TTTTTCTTCACATTTC
* * * *
66891 TCAATGTAGACATTCAATTATAATTTGTTTTAACCAAAAA-G-AAAGAATAATTGAACTTAAAAT
64 TCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAA-AA-AATTCAACTTAAAAT
* * * * * * *
66954 TAAATATGACATTATAAAATCGTTTAAAGCAAATAATAAGGCTTT
127 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* *
66999 TGAAGGAATGAGAGACTATAAATGGACTTCTT-TTACCAATGAATGCTTTTTTCTTCACATTTTT
1 TGAAGGAATGAGTGACTATAAATGGACTT-TTCTTACCAATGAATGCTTTTTTCTTCACATTTCT
* * * * **
67063 GAAGGTAAACATTCAATTATAGTCTGTTTCAACCAAAAATCTAAAACTATTCAACTTAAAATCAA
65 CAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAA
* *
67128 TTAGGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT
130 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
** * * * ** * *
67170 TGAAGGAATCTGTGACTATAAAAGGACTTTTCTTTCAAAT-AATTGGGTTTTTCTAT-ACGTCTC
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAA-TGCTTTTTTCT-TCACATTTC
* ** * *
67233 TCAAGGTAGGCATTCAATTATAGTCTGTTTTAAGGAAAAATGT-ACAAAATTGAACTTAAAATCA
64 TCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA
* * *
67297 ATTATGAGATGATAAAACCATTTAAAGCAAGTAATAAAGCTTT
129 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * ** * *
67340 TGAAGGAATAAG-AACTATAAATGGACTTTTCTTGTCAATGAATGCTTTTTTTCTTTACGTTTCT
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGC-TTTTTTCTTCACATTTCT
* * * * * **
67404 TAAGGTAGAGATTCAATTATAGTCTGTTTTAGCCAAAAATGTAAAACAAATTGAGCAGAAAATCA
65 CAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAA-AAATTCAACTTAAAATCA
* ** * * *
67469 ATGATGAGAAAATAAAACCATTTAAAGTGGGTAATAAAGAC-TT
129 ATTATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGCTTT
* * * ** * ** *
67512 TGAAGGAATGAGAGACTATAAATGGACTTTTCTTTCAAAT-AATTGGGTTTTTCTACACACATCC
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAA-TGCTTTTTTCTTCACATTTCT
* * ** *
67576 CAAGATAGGA-ATTGAATTATAGTCTGTTTTAATGAGAAATGT-AAAAAATTCAACTTAAAATCA
65 CAAGGTA-GACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA
* * *
67639 ATTATGTGATTATAAAACCATTTAAGGCGAGTAATAAAGCTTT
129 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * * *** * * ** *
67682 TGAAGAAATGGGTGACTATAACTAGTCTTTTCTTGTTAATGAATGCCTTTTTCTTTATGTTTCAC
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCTC
* * * * * *
67747 AAGGTAAACAATCAATTATAATTTGTTCTAACCAAAAATGTAGAAAAAATTGAACTTAAAATCAA
66 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTA-AAAAAATTCAACTTAAAATC-A
* * * *
67812 AGT-TGAGATTATGAAACCATTTAAATCGAGTAATATGGCTTT
129 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * ** * **
67854 TGAAGGAATGGGTGACTATAAATAGACTGTTCTTGTCAATGAATG-TATTTTTCTCCATGTTTCT
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGCT-TTTTTCTTCACATTTCT
** * * * * * * *
67918 GTAGGTAAACATTCAATTATAGCCTGTTTTAACGAGAAATGTAAAAAAACTCACCTAAAAATCAA
65 CAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAA
* *
67983 TTAT-ACGGTTATAAAACCATTTAAAGCGATTAATAAGGCTTT
130 TTATGA-GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * *
68025 CGAAGGAAT-AGATGACTATAAATAGACTTTTCTTACCAATGAATACTTTTTTCTTTATATTTCT
1 TGAAGGAATGAG-TGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCT
* * * * * * *
68089 CTAGGTAAACATTCAATTATAATCTTTTTTAACCGAGAAA-GTAAAAAAGTTTAACTTAAAATCA
65 CAAGGTAGACATTCAATTATAGTCTGTTTTAACC-AAAAATGTAAAAAAATTCAACTTAAAATCA
* * *
68153 ATTATGAGATTATAAAACTATTTAAAGTGAGTAATAAGGCTCT
129 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * * *
68196 TGAAGGAAT-ATGTGACAATGAAT-GACTTTTCTTGCCAATAAATTCATTTTTCTTCACATTTCT
1 TGAAGGAATGA-GTGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCT
* * * * * *
68259 CAAGGTACACATTCAATTATTA-TTTGTTTTAAACAAAAGTGTAAAAAAATTCAGCTTAAAATTA
65 CAAGGTAGACATTCAATTA-TAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA
* * * *
68323 ATTATAATATTATAAAACCATTTAAAACGAGTAAAAAGGCTTT
129 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * *
68366 TGAAGGAAT-AGGAGACTATAAATGGACTTTTCTTACCAATAAATACTTTTTTTCTT-TCATGTT
1 TGAAGGAATGA-GTGACTATAAATGGACTTTTCTTACCAATGAATGC-TTTTTTCTTCACAT-TT
* * *
68429 -TCATTAGGTAGACATTCAATTGTAGTCTGTTTTAACTAAAAATGTAAAAAAATTCTACTTAAAA
63 CTCA--AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAA
* * * * *
68493 TAAATTATAACATTATAAAGCCATTTAAAGCAAGTAATAAGGCTTT
126 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * * ** *
68539 TGGAGGAATGGGTGACTATAAGTGGACTTTTCTTACCATTGAATGCCTTTTTCTTCATGTTTCTT
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCTC
* * * * * * * * **********
68604 GACGTAGATATTCAATTATAATCTATTTCAATCAAAAAAGTAAAAACANNNNNNNNNNAAATCAA
66 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-AATTCAACTTAAAATCAA
* * * *
68669 TTTTGAGATTATAAAACCATTTAAAGTGTGTAATAA-GTTTT
130 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * * * **
68710 TGAAGGAATGGGT-AGCTATAAATAGATTTTTCTTTCAAATAAATGGATTTTT-TT-ACATGTTT
1 TGAAGGAATGAGTGA-CTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACA--TTT
* * * ** * ********** *
68772 CTCAGGGCAGTCATTCAATTATAGTCTGTTTTAATAAAAAATAT-NNNNNNNNNNACTTAATATC
63 CTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATC
* * * * *
68836 ACTTATGAGATTCTAAAACCATTTAAAGTGAGTAATAAAGCTTG
128 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * * * *
68880 TGAAGGAATGGGTAATTATAAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCGCGTTTCTT
1 TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCTC
* ** * * * *
68945 GACATAGACATTCAATTATAGTTTGTTTTGATCAAAAAAGTAAAAAAATTCAACTTAAAATCAAT
66 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
*
69010 TATGTGATTATAAAACCAT
131 TATGAGATTATAAAACCAT
69029 NNNNNNNNNN
Statistics
Matches: 1734, Mismatches: 410, Indels: 113
0.77 0.18 0.05
Matches are distributed among these distances:
168 15 0.01
169 80 0.05
170 522 0.30
171 574 0.33
172 377 0.22
173 166 0.10
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
TGAAGGAATGAGTGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCTC
AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
Found at i:68154 original size:514 final size:509
Alignment explanation
Indices: 66737--72067 Score: 1964
Period size: 513 Copynumber: 10.3 Consensus size: 509
66727 TAGACTTTCG
* * * * ** * * *
66737 ATTATAGTCTGTTTTAATCAAAAA--TAAAAAAATTAAAAATAAAATCAATT-TTACGGTAATAA
1 ATTATAATTTGTTTTAAACAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGA-GATTATAA
** * ** * * * *
66799 AACCATTTAAAGTGGGTAATAAGGCTTTTGAACAAATGGGTGACTATAAATAGA-TTTTTTTTTA
65 AACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTCTTGT-
* ** * * * * *
66863 CCAAAGAATGTCCTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAACCAA
128 -CAATGAATGTTTTTTTCTTCATGTTTCT-TAGGTAGACATTCAATTATAGTCTGTTTTAACCAA
* * * * * * * *
66928 AAA-G-AAAGAATAATTGAACTTAAAATTAAATATGAC-ATTATAAAATCGTTTAAAGCAAATAA
191 AAATGTAAA-AA-AATT-CACTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAA
66990 TAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTCTT-TTACCAATGAATGCTTTTTTCTT
253 TAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTT-TTCTTACCAATGAATGCTTTTTTCTT
* * * * * * *
67054 CACATTTTTGAAGGTAAACATTCAATTATAGTCTGTTTCAACC-AAAAATCTAAAACTATTCAAC
317 CACATTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGAAATGTAAAA-AATTCAAC
* *
67118 TTAAAATCAATTAGGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATCTGT
381 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATATGT
* ** * * **
67183 GACTATAAAAGGACTTTTCTT-TCAAATAATTGGGTTTTTCTATACGTCTCTCAAGGTAGGCATT
446 GACTATAATA-GACTTTTCTTGT-AAATAA-TGCATTTTTCTTTACGTTTCTCAAGGTAAACATT
67247 CA
508 CA
* * ** * *
67249 ATTATAGTCTGTTTTAAGGAAAAATGT-ACAAAATTGAACTTAAAATCAATTATGAGATGATAAA
1 ATTATAATTTGTTTTAAACAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATAAA
* * * * *
67313 ACCATTTAAAGCAAGTAATAAAGCTTTTGAAGGAATAAGAACTATAAATGGACTTTTCTTGTCAA
66 ACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGGGACTATAAATGGACTTTTCTTGTCAA
* * * *
67378 TGAATGCTTTTTTTCTTTACGTTTCTTAAGGTAGAGATTCAATTATAGTCTGTTTTAGCCAAAAA
131 TGAATG-TTTTTTTCTTCATGTTTCTT-AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA
* * * ** ***
67443 TGTAAAACAAATTGAGC-AGAAAATCAATGATGA-GAAAATAAAACCATTTAAAGTGGGTAATAA
194 TGTAAAA-AAATTCA-CTA-AAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAAT-A
* * * ** *
67506 AGAC-TTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTTCAAAT-AATTGGGTTTTTCTACA
255 AGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTACCAATGAA-TGCTTTTTTCTTCA
** * * * * * *
67569 CACATCCCAAGATAGGA-ATTGAATTATAGTCTGTTTTAA-TGAGAAATGTAAAAAATTCAACTT
319 CATTTCTCAAGGTA-AACATTCAATTATAATCTGTTTTAACCGAGAAATGTAAAAAATTCAACTT
* * * * * **
67632 AAAATCAATTATGTGATTATAAAACCATTTAAGGCGAGTAATAAAGCTTTTGAAGAAATGGGTGA
383 AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATATGTGA
* * * * * *
67697 CTATAACTAGTCTTTTCTTGTTAATGAATGCCTTTTTCTTTATGTTTCACAAGGTAAACAATCA
448 CTATAA-TAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTAAACATTCA
* * * *
67761 ATTATAATTTGTTCTAACCAAAAATGTAGAAAAAATTGAACTTAAAATCAAAGT-TGAGATTATG
1 ATTATAATTTGTTTTAAACAAAAATGTA-AAAAAATTGAACTTAAAATC-AATTATGAGATTATA
* * * * *
67825 AAACCATTTAAATCGAGTAATATGGCTTTTGAAGGAATGGGTGACTATAAATAGACTGTTCTTGT
64 AAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTCTTGT
* * * * * *
67890 CAATGAATGTATTTTTCTCCATGTTTCTGTAGGTAAACATTCAATTATAGCCTGTTTTAACGAGA
128 CAATGAATGTTTTTTTCTTCATGTTTCT-TAGGTAGACATTCAATTATAGTCTGTTTTAACCAAA
* * * *
67955 AATGTAAAAAAACTCACCTAAAAATCAATTAT-ACGGTTATAAAACCATTTAAAGCGATTAATAA
192 AATGTAAAAAAATTCA-CTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAATAA
* * * * *
68019 GGCTTTCGAAGGAAT-AGATGACTATAAATAGACTTTTCTTACCAATGAATACTTTTTTCTTTAT
256 GGCTTTTGAAGGAATGAGA-GACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCAC
* * *
68083 ATTTCTCTAGGTAAACATTCAATTATAATCTTTTTTAACCGAGAAA-GTAAAAAAGTTTAACTTA
320 ATTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGAAATGTAAAAAA-TTCAACTTA
* *
68147 AAATCAATTATGAGATTATAAAACTATTTAAAGTGAGTAATAAGGCTCTTGAAGGAATATGTGAC
384 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATATGTGAC
* ** * * * *
68212 AATGAAT-GACTTTTCTTGCCAATAAATTCATTTTTCTTCACATTTCTCAAGGTACACATTCA
449 TAT-AATAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTAAACATTCA
* * * * * * *
68274 ATTATTATTTGTTTTAAACAAAAGTGTAAAAAAATTCAGCTTAAAATTAATTATAATATTATAAA
1 ATTATAATTTGTTTTAAACAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATAAA
* **
68339 ACCATTTAAAACGAGTAAAAAGGCTTTTGAAGGAATAGGAGACTATAAATGGACTTTTCTTACCA
66 ACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTCTTGTCA
* * * *
68404 ATAAATACTTTTTTTCTTTCATGTTTCATTAGGTAGACATTCAATTGTAGTCTGTTTTAACTAAA
130 ATGAAT-GTTTTTTTC-TTCATGTTTC-TTAGGTAGACATTCAATTATAGTCTGTTTTAACCAAA
* * *
68469 AATGTAAAAAAATTCTACTTAAAATAAATTATAAC-ATTATAAAGCCATTTAAAGCAAGTAATAA
192 AATGTAAAAAAATTC-ACTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAATAA
* * * * * * **
68533 GGCTTTTGGAGGAATGGGTGACTATAAGTGGACTTTTCTTACCATTGAATGCCTTTTTCTTCATG
256 GGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACA
** * * * * * * * * *********
68598 TTTCTTGACGTAGATATTCAATTATAATCTATTTCAATC-AAAAAAGTAAAAACANNNNNNNNNN
321 TTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGAAATGTAAAAA-A-TTCAACTTA
* * * **
68662 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGTGTAATAA-GTTTTTGAAGGAATGGGT-AG
384 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATATGTGA-
* * * * **
68725 CTATAAATAGATTTTTCTT-TCAAATAAATGGA-TTTT-TTTACATGTTTCTCAGGGCAGTCATT
448 CTAT-AATAGACTTTTCTTGT-AAAT-AATGCATTTTTCTTTAC--GTTTCTCAAGGTAAACATT
68787 CA
508 CA
* * * ********** * * *
68789 ATTATAGTCTGTTTTAATA-AAAAATAT-NNNNNNNNNNACTTAATATCACTTATGAGATTCTAA
1 ATTATAATTTGTTTTAA-ACAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATAA
** * * * **
68852 AACCATTTAAAGTGAGTAATAAAGCTTGTGAAGGAAT-GGGTAATTATAAATGGACTTTTCTTAC
65 AACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGGG--ACTATAAATGGACTTTTCTTGT
** ** ** * * *
68916 CAATGAATGCCTTTTTCTTCGCGTTTCTTGACATAGACATTCAATTATAGTTTGTTTTGATCAAA
128 CAATGAATGTTTTTTTCTTCATGTTTCTT-AGGTAGACATTCAATTATAGTCTGTTTTAACCAAA
* * **
68981 AAAGTAAAAAAATTCAACTTAAAATCAATTAT-GTGATTATAAAACCATNNNNNNNNNNNNNNNN
192 AATGTAAAAAAATTC-ACTAAAAATCAATTATAACGATTATAAAACCAT----------------
****************************************************
69045 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
240 -------------TTAAAGCAAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTT
************** * *** ** ** * * * **
69110 NNNNNNNNNNNNNNGAC-TATAAATGGAC-TTT-TCTTGCTAATGA-ATATC-TTTTTCTTCATG
292 TCTTACCAATGAATG-CTTTTTTCTTCACATTTCTCAAGGTAA--ACAT-TCAATTATAATC-TG
***** * * * * *** ** *
69170 TTTCTCGTTATAGACAT-TCAATTATAGTCTGTTTTAACCAA--AAGTGTAAAAACATTTAACTT
352 TTT-T-AACCGAGAAATGT-AA-AAAATTC-AACTTAA--AATCAA-T-T-ATGAGA-TT-A--T
* * *
69232 AAAATCAATTATGAAA-TTA-TAA-AA--CTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATG
403 AAAA-CCATT-T-AAAGTGAGTAATAAGGCT-TTTGAA--G-G-AAT-A------T----G--T-
* * * * * * * *
69292 AGAGATTATAAATAGACTTTTCTTGTCAATAAATGC-TTTTCTCTTCATGTTTTTTAAGGAAAAA
446 ---GACTAT-AATAGACTTTTCTTGTAAAT-AATGCATTTT-TCTTTACGTTTCTCAAGGTAAAC
69356 ATTCA
505 ATTCA
** * * * *
69361 ATTATCGTTTGTTTT-AACTAAAAATTTTAAAACAATT-AAGTATAAAATCAATT-TGAGTTTAT
1 ATTATAATTTGTTTTAAAC-AAAAA-TGTAAAAAAATTGAACT-TAAAATCAATTATGAGATTAT
* *********** * * * * *
69423 AAAACTATTTAAAGNNNNNNNNNNGGCTTTTGAAAGAATGGGTGACTATCAGTAGACTTTTCTTG
63 AAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTCTTG
* * * ********** **
69488 GCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAANNNNNNNNNNTTTTAATGAA
127 TCAATGAATGTTTTTTTCTTCATGTTTCT-TAGGTAGACATTCAATTATAGTCTGTTTTAACCAA
* * * * * * * ** *
69553 AAATGTTAAACAATTTGACTTAAAATCATTTATGA-GATTATAAAATCATTTAAAGTGACTAATA
191 AAATG-TAAAAAAATTCACTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAATA
* * * * * * * * *
69617 AGGCTTTCGAAGGGAT-AGGTGACTATACATGGACTTTTCTTTCAAAT-AATTGGGCTTCTCTAT
255 AGGCTTTTGAAGGAATGA-GAGACTATAAATGGACTTTTCTTACCAATGAA-T--GCTTTTTTCT
* ** * * * * *
69680 GCA-A-TTCGTGGA-GCAAGA-ATTCAATTATAGTCTATTTTAATCAAG-AATGTAAAAAATTCA
316 TCACATTTC-TCAAGGTAA-ACATTCAATTATAATCTGTTTTAACCGAGAAATGTAAAAAATTCA
* * * * * ********** * * **
69740 ACCTAAAATCAACTACGATATTATAAAACCATTTAAAGCGAGNNNNNNNNNNTTTGAAAGATTGG
379 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAT
* * ** * * * * * *
69805 GTGACTATACCTAGTCTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCACGAGGTAGACAA
444 GTGACTATA-ATAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTAAACAT
69870 TCA
507 TCA
* * * **********
69873 AGTATAATCTGTTTTAACCAAAAATGNNNNNNNNNNGAAACTTAAAATCAATGT-TGAGATTATA
1 ATTATAATTTGTTTTAAACAAAAATGTAAAAAAATTG-AACTTAAAATCAAT-TATGAGATTATA
** * * * *
69937 AAACCATTTAAATTGAGTAATAAGGCTTTTGAAAGAATGAGTGACTATAAATAGACTTTTCTTAT
64 AAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAAT-AGGGACTATAAATGGACTTTTCTTGT
** ********** * * ** *
70002 CAATGAATGCCTTTNNNNNNNNNNTTCTTGAGGTAAACATTCAATTATAGTATGTTTTAATGACA
128 CAATGAATGTTTTTTTCTTCATGTTTCTT-AGGTAGACATTCAATTATAGTCTGTTTTAACCAAA
* * * * * *
70067 AATATAAAAAAAATTTAACTTAAAATTAATTATCA-GATTACAAAACCATTTAAAGCGAA-TAAT
192 AATGT-AAAAAAA-TTCACTAAAAATCAATTATAACGATTATAAAACCATTTAAAGC-AAGTAAT
* * ** * *
70130 AAGGCTTTTGAAGGAACG-GAAGACTATAAATGGACTTTTCTTGCTGACGAATACTTTTTTGC-T
254 AAGGCTTTTGAAGGAATGAG-AGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTT-CTT
** * * * * * * *
70193 CATGTTTGTTAAGGTAGACATTCAATTATATTCTATTTTAA-CAAAAAATGTAAAAAAACTTCAA
317 CACATTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGAAATGT-AAAAAA-TTCAA
* * ********** * **
70257 CTTAAAATTAATTATAAGATTATAANNNNNNNNNNAGCGAGTAATAAGGCTTTTGAAGGAATCGG
380 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATATG
** * * * * *
70322 TGACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCAGGTTTCTCAAGGTAGGA-AT
445 TGACTAT-AATAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTA-AACAT
70386 TCA
507 TCA
* * * * * *
70389 ATTATAATCTGTTTTAACCAATAATGCAAAAACAAATTGAACCTAAAATCAATTATGAAATTATA
1 ATTATAATTTGTTTTAAACAAAAATG-TAAAA-AAATTGAACTTAAAATCAATTATGAGATTATA
* * * * * * * *
70454 AAGCCATTTAAAGCGAGTAGTAAGGCTTTTGGACGAGTAGGAGAATATAACTGGAC-TTTCATTG
64 AAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTC-TTG
*** ** * * * *
70518 -CTAATGAATACCTTTCACTTCATGTTTCCTGAGGTCGACATTCAATTATAATCTGTTTTAACTA
127 TC-AATGAATGTTTTTTTCTTCATGTTT-CTTAGGTAGACATTCAATTATAGTCTGTTTTAACCA
* * * * *
70582 AAAATGTAGAAAAAATTGAACTTAAAATCAATTTTGA-GATTATAAAACCATTTAAAGCGAGTAA
190 AAAATGTA-AAAAAATT-CACTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAA
** * * *
70646 TAAGGCTTTTGAAGGAATTG-GTTACTATAAATGGACTTTTCTTGCTAATGAATAC-TTTTTCTT
253 TAAGGCTTTTGAAGGAA-TGAGAGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTT
* ** * *
70709 CACGTTTCTTGAGGTAGAA-ATTCAATTATAATTTGTTTTAACC-A-ATAATGTAAAAACAATTA
317 CACATTTCTCAAGGTA-AACATTCAATTATAATCTGTTTTAACCGAGA-AATGT-AAAA-AATTC
* * * * *
70771 AACCTAAAATCAATTATGAGACTATAAAA-CTTTTAAAATAGAATAATAAGGCTTTTGAAGGAAT
378 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGT-GAGTAATAAGGCTTTTGAAGGAAT
* ** ** * * * ** *
70835 GA-GAGACTATAAATAGACTTTAATTGCCAATGAATACTTTTTTCTTCATATTTCTCAAGGTAGA
442 -ATGTGACTAT-AATAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTAAA
70899 CATTCA
504 CATTCA
* * *
70905 ATTAT-ATTCTGTTTTAATA-AAAAATGTAAAAAAA-TCACCTTAAAATCAATTATGAAATTATA
1 ATTATAATT-TGTTTTAA-ACAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATA
* * * * *
70967 AAACCATTTAAAGCTAGTAATATGGCTTTTGAAGGAATGGGTGACTATAAGA-AGACTTTTCTT-
64 AAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAA-ATGGACTTTTCTTG
* * ** * * ** * **
71030 ACTAATAAATGCCTTTCTCCTCACATTTCTTGAGGTAGACATTCAATTATAATCAATTTTAACCA
127 TC-AATGAATGTTTTTTTCTTCATGTTTCTT-AGGTAGACATTCAATTATAGTCTGTTTTAACCA
* * * * * * * *
71095 ATAATATAAAAAAAATTGAACCAAAAATCAATTATGA-GATTATAAAACTATTTACTA-CGAGTA
190 AAAATGT-AAAAAAATT-CACTAAAAATCAATTATAACGATTATAAAACCATTTA-AAGCAAGTA
* * * * * * *
71158 ATAAGACTTTTGAAGAAATGAGATACTATAAATAGATTTTTCTTACCAATGAATACTTCTTTCTT
252 ATAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTT
* ** * * * ** *
71223 TATGTTTCTCAAGGTAGACATTAAATTATAAACCATTTTAACC-A-ATAATGTAAAAGAAAATTG
317 CACATTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGA-AATGT--AA-AAAATTC
* * * * *
71286 AGCTTAAAATTAATTATGAGATTATAAAATCATTTAACA-CGAGTAATAAGGCCTTTGAAGGAAT
378 AACTTAAAATCAATTATGAGATTATAAAACCATTTAA-AGTGAGTAATAAGGCTTTTGAAGGAAT
* * ** *** * * * *
71350 -TGGAGACTATAAATGGACTTTTCTTGCCAATAAATATTTTTTTCTTCATGTTTCTCATGGTAGA
442 AT-GTGACTAT-AATAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTAAA
*
71414 CACTCA
504 CATTCA
* * * * * *
71420 ATTATAATCTATTTT-AACTAATAATAGAAAAAAAATTGATCCTAAAATCAATTATGAGATTATA
1 ATTATAATTTGTTTTAAAC-AAAAAT-GTAAAAAAATTGAACTTAAAATCAATTATGAGATTATA
* * *
71484 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGAGACTATAAATAGACTTTTCTTGC
64 AAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTCTTGT
* ** * * * **
71549 CAATGAATGCTTTTTTT-GTCACATTTCTCATGGTAGACATTCAATTATAATTTGTTTTAATTAA
128 CAATGAATG-TTTTTTTCTTCATGTTTCTTA-GGTAGACATTCAATTATAGTCTGTTTTAACCAA
* * * * ** *
71613 TAATGTAAAAAAAAATTGATCCT-AAAATCAATTATGA-GATTATAAAACCATTGAAAGTGAGCA
191 AAATGT--AAAAAAATTCA--CTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTA
* * * * * * *
71676 ATAAGGCTTTTGAAGAAATAAGTA-ACTATAAATAGACTTTTC-CAGCTAATGAATACCTTTTTC
252 ATAAGGCTTTTGAAGGAATGAG-AGACTATAAATGGACTTTTCTTA-CCAATGAATGCTTTTTTC
* ** * * * * * *
71739 CTCATGTTTCTCAGGGTAGACATTCAATTATAATCTGTTTCAACTGA-TAATGTAAAAAAAATTG
315 TTCACATTTCTCAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGAAATGT--AAAAAATTC
* * *
71803 AACTTAAAATCAATTACGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
378 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAAT-
* * ** * * * *
71868 A-GAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTCAAGGTAAAG
442 ATGTGACTAT-AATAGACTTTTCTTGTAAAT-AATGCATTTTTCTTTACGTTTCTCAAGGTAAAC
* *
71932 GTTTA
505 ATTCA
* * * * *
71937 ATTAT-ATTCCGTTTT-AACAAAAAATGTAAAAACAATTGAGCATAAAATCAATTTTGAGATAAT
1 ATTATAATT-TGTTTTAAAC-AAAAATGTAAAAA-AATTGAACTTAAAATCAATTATGAGATTAT
** * * * *
72000 AAAACTGTTTAAAATGGGTAATAAGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTT-
63 AAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGG-GACTATAAATGGACTTTTCTTG
72064 TCAA
127 TCAA
72068 ATAATTGGGT
Statistics
Matches: 3602, Mismatches: 977, Indels: 476
0.71 0.19 0.09
Matches are distributed among these distances:
511 15 0.00
512 476 0.13
513 739 0.21
514 651 0.18
515 283 0.08
516 340 0.09
517 571 0.16
518 151 0.04
519 3 0.00
529 5 0.00
530 3 0.00
531 4 0.00
532 5 0.00
533 5 0.00
534 1 0.00
535 2 0.00
536 3 0.00
537 3 0.00
539 8 0.00
540 14 0.00
541 16 0.00
542 5 0.00
543 3 0.00
544 15 0.00
545 14 0.00
546 12 0.00
547 3 0.00
548 2 0.00
549 1 0.00
550 1 0.00
551 12 0.00
552 7 0.00
553 3 0.00
554 4 0.00
555 3 0.00
566 1 0.00
568 1 0.00
570 1 0.00
571 1 0.00
572 60 0.02
573 132 0.04
574 22 0.01
575 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.34
Consensus pattern (509 bp):
ATTATAATTTGTTTTAAACAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATAAA
ACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATAGGGACTATAAATGGACTTTTCTTGTCAA
TGAATGTTTTTTTCTTCATGTTTCTTAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATG
TAAAAAAATTCACTAAAAATCAATTATAACGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
TTGAAGGAATGAGAGACTATAAATGGACTTTTCTTACCAATGAATGCTTTTTTCTTCACATTTCT
CAAGGTAAACATTCAATTATAATCTGTTTTAACCGAGAAATGTAAAAAATTCAACTTAAAATCAA
TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATATGTGACTATAATA
GACTTTTCTTGTAAATAATGCATTTTTCTTTACGTTTCTCAAGGTAAACATTCA
Found at i:70526 original size:173 final size:172
Alignment explanation
Indices: 69124--72063 Score: 2320
Period size: 172 Copynumber: 17.1 Consensus size: 172
69114 NNNNNNNNNN
* * * ****
69124 GACTATAAATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCATGTTTCTCGTTATAGACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* * * * *
69189 AATTATAGTCTGTTTTAACCAA-AAGTGT-AAAAACATTTAACTTAAAATCAATTATGAAATTAT
66 AATTATAATCTGTTTTAACCAATAA-TGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTAT
* *
69252 AAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAAT-GAGA
130 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAG-GA
* * * * * * * * *
69295 GATTATAAATAGACTTTTCTTGTCAATAAAT-GCTTTTCTCTTCATGTTTTTTAAGGAAAAAATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTT-TCTTCATGTTTCTCAAGGTAGACATT
** * * * * * * ** *
69359 CAATTATCGTTTGTTTTAACTAAAAATTTTAAAACAATT-AAGTATAAAATCAATT-TGAGTTTA
65 CAATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAA-CCTAAAATCAATTATGAGATTA
* ********** * * *
69422 TAAAACTATTTAAAGNNNNNNNNNNGGCTTTTGAAAGAATGGGT
129 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * * **
69466 GACTATCAGTAGACTTTTCTTGGCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
********** ** * * * * * *
69531 AANNNNNNNNNNTTTTAATGAAAAATGTTAAACAATTTG-ACTTAAAATCATTTATGAGATTATA
66 AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATA
* * * * * *
69595 AAATCATTTAAAGTGACTAATAAGGCTTTCGAAGGGATAGGT
131 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * * * ** * * ** **
69637 GACTATACATGGACTTTTCTTTCAAAT-AATTGGGC-TTCTC-T-ATGCAATTCGTGGAGCAAGA
1 GACTATAAATAGACTTTTCTTGCCAATGAA-T-ACCTTTTTCTTCATG--TTTC-TCAAGGTAGA
* * * * * * * *
69698 -ATTCAATTATAGTCTATTTTAATCAAGAATGT--AAAAAATTCAACCTAAAATCAACTACGATA
61 CATTCAATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGA
********** * * * *
69760 TTATAAAACCATTTAAAGCGAGNNNNNNNNNNTTTGAAAGATTGGGT
126 TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
** * * * * * * *
69807 GACTATACCTAGTCTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCACGAGGTAGACAATC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* * ********** *
69872 AAGTATAATCTGTTTTAACCAAAAATG-NNNNNNNNNNGAAACTTAAAATCAATGT-TGAGATTA
66 AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTG-AACCTAAAATCAAT-TATGAGATTA
** * *
69935 TAAAACCATTTAAATTGAGTAATAAGGCTTTTGAAAGAAT-GAGT
129 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAG-GA
** * ********** ** *
69979 GACTATAAATAGACTTTTCTTATCAATGAATGCCTTTNNNNNNNNNNTTCTTGAGGTAAACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* * ** * * * * * *
70044 AATTATAGTATGTTTTAATGACA-AATATAAAAAAAATTTAACTTAAAATTAATTATCAGATTAC
66 AATTATAATCTGTTTTAACCA-ATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTAT
* *
70108 AAAACCATTTAAAGCGAATAATAAGGCTTTTGAAGGAA-CGGAA
130 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGG-A
* ** * * * *
70151 GACTATAAATGGACTTTTCTTGCTGACGAATACTTTTTTGC-TCATGTTTGTTAAGGTAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTT-CTTCATGTTTCTCAAGGTAGACATT
* * * * * * * * *
70215 CAATTATATTCTATTTTAACAAAAAATGTAAAAAAACTTCAACTTAAAATTAATTATAAGATTAT
65 CAATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTAT
********** * *
70280 AANNNNNNNNNNAGCGAGTAATAAGGCTTTTGAAGGAATCGGT
130 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
*
70323 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCAGGTTTCTCAAGGTAGGA-ATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTA-GACATT
* *
70387 CAATTATAATCTGTTTTAACCAATAATGCAAAAACAAATTGAACCTAAAATCAATTATGAAATTA
65 CAATTATAATCTGTTTTAACCAATAATGTAAAAA-AAATTGAACCTAAAATCAATTATGAGATTA
* * * * *
70452 TAAAGCCATTTAAAGCGAGTAGTAAGGCTTTTGGACGAGTAGGA
129 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * * * ** * *
70496 GAATATAACTGGAC-TTTCATTGCTAATGAATACCTTTCACTTCATGTTTC-CTGAGGTCGACAT
1 GACTATAAATAGACTTTTC-TTGCCAATGAATACCTTTTTCTTCATGTTTCTC-AAGGTAGACAT
* * * * *
70559 TCAATTATAATCTGTTTTAACTAAAAATGTAGAAAAAATTGAACTTAAAATCAATTTTGAGATTA
64 TCAATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTA
* *
70624 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGT
129 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * * * ** *
70668 TACTATAAATGGACTTTTCTTGCTAATGAATA-CTTTTTCTTCACGTTTCTTGAGGTAGAAATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* * * *
70732 AATTATAATTTGTTTTAACCAATAATGTAAAAACAATTAAACCTAAAATCAATTATGAGACTATA
66 AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATA
* ** *
70797 AAA-CTTTTAAAATAGAATAATAAGGCTTTTGAAGGAAT-GAGA
131 AAACCATTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATAG-GA
** * *
70839 GACTATAAATAGACTTTAATTGCCAATGAATACTTTTTTCTTCATATTTCTCAAGGTAGACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* ** * * *
70904 AATTATATTCTGTTTTAATAAAAAATGT-AAAAAAA-T-CACCTTAAAATCAATTATGAAATTAT
66 AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACC-TAAAATCAATTATGAGATTAT
* * * *
70966 AAAACCATTTAAAGCTAGTAATATGGCTTTTGAAGGAATGGGT
130 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * * * * * ** **
71009 GACTATAAGA-AGACTTTTCTTACTAATAAATGCCTTTCTCCTCACATTTCTTGAGGTAGACATT
1 GACTATAA-ATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATT
** * *
71073 CAATTATAATCAATTTTAACCAATAATATAAAAAAAATTGAACCAAAAATCAATTATGAGATTAT
65 CAATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTAT
* * * *
71138 AAAACTATTTACTA-CGAGTAATAAGACTTTTGAAGAAAT-GAGA
130 AAAACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGGAATAG-GA
* * * *
71181 TACTATAAATAGATTTTTCTTACCAATGAATA-CTTCTTTCTTTATGTTTCTCAAGGTAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTT-TTTCTTCATGTTTCTCAAGGTAGACATT
* * ** * * *
71245 AAATTATAAACCATTTTAACCAATAATGTAAAAGAAAATTGAGCTTAAAATTAATTATGAGATTA
65 CAATTATAATCTGTTTTAACCAATAATGTAAAA-AAAATTGAACCTAAAATCAATTATGAGATTA
* * *
71310 TAAAATCATTTAACA-CGAGTAATAAGGCCTTTGAAGGAATTGGA
129 TAAAACCATTTAA-AGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * ** * *
71354 GACTATAAATGGACTTTTCTTGCCAATAAATATTTTTTTCTTCATGTTTCTCATGGTAGACACTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* * *
71419 AATTATAATCTATTTTAACTAATAATAG-AAAAAAAATTGATCCTAAAATCAATTATGAGATTAT
66 AATTATAATCTGTTTTAACCAATAAT-GTAAAAAAAATTGAACCTAAAATCAATTATGAGATTAT
71483 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
130 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
* * ** *
71526 GACTATAAATAGACTTTTCTTGCCAATGAAT-GCTTTTTTTGTCACATTTCTCATGGTAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCT-TCATGTTTCTCAAGGTAGACATT
* ** *
71590 CAATTATAATTTGTTTTAATTAATAATGTAAAAAAAAATTGATCCTAAAATCAATTATGAGATTA
65 CAATTATAATCTGTTTTAACCAATAATGT-AAAAAAAATTGAACCTAAAATCAATTATGAGATTA
* * * * *
71655 TAAAACCATTGAAAGTGAGCAATAAGGCTTTTGAAGAAATAAGTA
129 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT-AGGA
** * * *
71700 -ACTATAAATAGACTTTTCCAGCTAATGAATACCTTTTTCCTCATGTTTCTCAGGGTAGACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* ** * *
71764 AATTATAATCTGTTTCAACTGATAATGTAAAAAAAATTGAACTTAAAATCAATTACGAGATTATA
66 AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATA
*
71829 AAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT-GAGA
131 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAG-GA
* * * * ** *
71871 GACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTCAAGGTAAAGGTTT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
* * * * * * * * *
71936 AATTATATTCCGTTTTAACAAAAAATGTAAAAACAATTGAGCATAAAATCAATTTTGAGATAATA
66 AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATA
** ** * *
72001 AAACTGTTTAAAATGGGTAATAAGGCTTTTGAAAGAATAGGA
131 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
72043 GACTATAAATAGACTTTTCTT
1 GACTATAAATAGACTTTTCTT
72064 TCAAATAATT
Statistics
Matches: 2180, Mismatches: 521, Indels: 135
0.77 0.18 0.05
Matches are distributed among these distances:
169 19 0.01
170 244 0.11
171 436 0.20
172 1041 0.48
173 427 0.20
174 13 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (172 bp):
GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
AATTATAATCTGTTTTAACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATA
AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGA
Found at i:70608 original size:345 final size:342
Alignment explanation
Indices: 69124--72063 Score: 2363
Period size: 345 Copynumber: 8.6 Consensus size: 342
69114 NNNNNNNNNN
* * * * *
69124 GACTATAAATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCATGTTTCT-CGTTATAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTAAG--GTAGACATT
* * * * * *
69188 CAATTATAGTCTGTTTTAACCAAAAGTGTAAAAACATTTAACTTAAAATCAATTATGAAATTATA
64 CAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATA
* * * *
69253 AAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAA-TGAGAGATTATAAATAGACTTTTCTTG
129 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTG-GTGACTATAAATAGACTTTTCTTG
* * * * * * * * ** * *
69317 -TCAATAAAT-GCTTTTCTCTTCATGTTTTTTAAGGAAAAAATTCAATTATCGTTTGTTTTAACT
193 CT-AATGAATACCTTTT-TCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACC
* * * * ** * * ******
69380 AAAAATTTTAAAACAATT-AAGTATAAAATCAATT-TGAGTTTATAAAACTATTTAAAGNNNNNN
256 AATAATGTAAAAAAAATTGAA-CCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
**** * * *
69443 NNNNGGCTTTTGAAAGAATGGGT
320 ATAAGGCTTTTGAAGGAATAGGA
* * * **
69466 GACTATCAGTAGACTTTTCTTGGCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAGACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCT-AAGGTAGACATTC
********** * * *
69531 AANNNNNNNNNNTTTTAA-TGAAAAATGTTAAACAATTTG-ACTTAAAATCATTTATGAGATTAT
65 AATTATAATCTGTTTTAACT-AAAAATG-TAAAAAAATTGAACTTAAAATCAATTATGAGATTAT
* * * * * * * * *
69594 AAAATCATTTAAAGTGACTAATAAGGCTTTCGAAGGGATAGGTGACTATACATGGACTTTTCTTT
128 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCTTG
* ** * * ** ** * *
69659 CAAAT-AATTGGGC-TTCTCTATGCA--ATTCGTGGAGCAAGA-ATTCAATTATAGTCTATTTTA
193 CTAATGAA-T-ACCTTTTTCT-T-CACGTTTC-TCAAGGTAGACATTCAATTATAATCTGTTTTA
* * * * * *
69719 ATCAAGAATGT--AAAAAATTCAACCTAAAATCAACTACGATATTATAAAACCATTTAAAGCGAG
253 ACCAATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
********** * * * *
69782 NNNNNNNNNNTTTGAAAGATTGGGT
318 TAATAAGGCTTTTGAAGGAATAGGA
** * * * * *
69807 GACTATACCTAGTCTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTC-ACGAGGTAGACAAT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTA--AGGTAGACATT
* * **********
69871 CAAGTATAATCTGTTTTAACCAAAAATGNNNNNNNNNNGAAACTTAAAATCAATGT-TGAGATTA
64 CAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTG-AACTTAAAATCAAT-TATGAGATTA
** *
69935 TAAAACCATTTAAATTGAGTAATAAGGCTTTTGAAAGAA-TGAGTGACTATAAATAGACTTTTCT
127 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTG-GTGACTATAAATAGACTTTTCT
* * ********** ** * * * *
69999 T-ATCAATGAATGCCTTTNNNNNNNNNNTTCTTGAGGTAAACATTCAATTATAGTATGTTTTAAT
191 TGCT-AATGAATACCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAAC
* * * * * * * *
70063 GACA-AATATAAAAAAAATTTAACTTAAAATTAATTATCAGATTACAAAACCATTTAAAGCGAAT
255 CA-ATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
*
70127 AATAAGGCTTTTGAAGGAA-CGGAA
319 AATAAGGCTTTTGAAGGAATAGG-A
* ** * * *
70151 GACTATAAATGGACTTTTCTTGCTGACGAATACTTTTTTGC-TCATGTTTGTTAAGGTAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTT-CTTCATGTTT-CTAAGGTAGACATT
* * * * * *
70215 CAATTATATTCTATTTTAACAAAAAATGTAAAAAAACTTCAACTTAAAATTAATTATAAGATTAT
64 CAATTATAATCTGTTTTAACTAAAAATGTAAAAAAA-TTGAACTTAAAATCAATTATGAGATTAT
********** *
70280 AANNNNNNNNNNAGCGAGTAATAAGGCTTTTGAAGGAATCGGTGACTATAAATAGACTTTTCTTG
128 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCTTG
* *
70345 CCAATGAATACCTTTTTCTTCAGGTTTCTCAAGGTAGGA-ATTCAATTATAATCTGTTTTAACCA
193 CTAATGAATACCTTTTTCTTCACGTTTCTCAAGGTA-GACATTCAATTATAATCTGTTTTAACCA
* * * *
70409 ATAATGCAAAAACAAATTGAACCTAAAATCAATTATGAAATTATAAAGCCATTTAAAGCGAGTAG
257 ATAATGTAAAAA-AAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * *
70474 TAAGGCTTTTGGACGAGTAGGA
321 TAAGGCTTTTGAAGGAATAGGA
* * * * ** * *
70496 GAATATAACTGGAC-TTTCATTGCTAATGAATACCTTTCACTTCATGTTTCCTGAGGTCGACATT
1 GACTATAAATAGACTTTTC-TTGCCAATGAATACCTTTTTCTTCATGTTT-CTAAGGTAGACATT
*
70560 CAATTATAATCTGTTTTAACTAAAAATGTAGAAAAAATTGAACTTAAAATCAATTTTGAGATTAT
64 CAATTATAATCTGTTTTAACTAAAAATGTA-AAAAAATTGAACTTAAAATCAATTATGAGATTAT
* *
70625 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTTACTATAAATGGACTTTTCTTG
128 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCTTG
** * *
70690 CTAATGAATA-CTTTTTCTTCACGTTTCTTGAGGTAGAAATTCAATTATAATTTGTTTTAACCAA
193 CTAATGAATACCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAA
* * * * ** *
70754 TAATGTAAAAACAATTAAACCTAAAATCAATTATGAGACTATAAAA-CTTTTAAAATAGAATAAT
258 TAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGAGTAAT
70818 AAGGCTTTTGAAGGAAT-GAGA
322 AAGGCTTTTGAAGGAATAG-GA
** * *
70839 GACTATAAATAGACTTTAATTGCCAATGAATACTTTTTTCTTCATATTTCTCAAGGTAGACATTC
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCT-AAGGTAGACATTC
* * * *
70904 AATTATATTCTGTTTTAA-TAAAAAATGTAAAAAAA-TCACCTTAAAATCAATTATGAAATTATA
65 AATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATA
* * * *
70967 AAACCATTTAAAGCTAGTAATATGGCTTTTGAAGGAATGGGTGACTATAAGA-AGACTTTTCTTA
129 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAA-ATAGACTTTTCTTG
* * * * * ** **
71031 CTAATAAATGCCTTTCTCCTCACATTTCTTGAGGTAGACATTCAATTATAATCAATTTTAACCAA
193 CTAATGAATACCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAA
* * * *
71096 TAATATAAAAAAAATTGAACCAAAAATCAATTATGAGATTATAAAACTATTTACTA-CGAGTAAT
258 TAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAAT
* *
71160 AAGACTTTTGAAGAAAT-GAGA
322 AAGGCTTTTGAAGGAATAG-GA
* * * *
71181 TACTATAAATAGATTTTTCTTACCAATGAATA-CTTCTTTCTTTATGTTTCTCAAGGTAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTT-TTTCTTCATGTTTCT-AAGGTAGACATT
* * ** * * * *
71245 AAATTATAAACCATTTTAACCAATAATGTAAAAGAAAATTGAGCTTAAAATTAATTATGAGATTA
64 CAATTATAATCTGTTTTAACTAAAAATGT-AAA-AAAATTGAACTTAAAATCAATTATGAGATTA
* * * *
71310 TAAAATCATTTAACA-CGAGTAATAAGGCCTTTGAAGGAATTGGAGACTATAAATGGACTTTTCT
127 TAAAACCATTTAA-AGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCT
* * ** * * * * *
71374 TGCCAATAAATATTTTTTTCTTCATGTTTCTCATGGTAGACACTCAATTATAATCTATTTTAACT
191 TGCTAATGAATACCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACC
*
71439 AATAATAG-AAAAAAAATTGATCCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
256 AATAAT-GTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
71503 ATAAGGCTTTTGAAGGAATAGGA
320 ATAAGGCTTTTGAAGGAATAGGA
* * ** *
71526 GACTATAAATAGACTTTTCTTGCCAATGAAT-GCTTTTTTTGTCACATTTCTCATGGTAGACATT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCT-TCATGTTTCT-AAGGTAGACATT
* * * * *
71590 CAATTATAATTTGTTTTAATTAATAATGTAAAAAAAAATTGATCCTAAAATCAATTATGAGATTA
64 CAATTATAATCTGTTTTAACTAAAAATGT--AAAAAAATTGAACTTAAAATCAATTATGAGATTA
* * * * ** * **
71655 TAAAACCATTGAAAGTGAGCAATAAGGCTTTTGAAGAAATAAGTAACTATAAATAGACTTTTCCA
127 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCTT
* * * * **
71720 GCTAATGAATACCTTTTTCCTCATGTTTCTCAGGGTAGACATTCAATTATAATCTGTTTCAACTG
192 GCTAATGAATACCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCA
* * *
71785 ATAATGTAAAAAAAATTGAACTTAAAATCAATTACGAGATTATAAAATCATTTAAAGCGAGTAAT
257 ATAATGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
71850 AAGGCTTTTGAAGGAAT-GAGA
322 AAGGCTTTTGAAGGAATAG-GA
* * * * ** *
71871 GACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTCAAGGTAAAGGTTT
1 GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCT-AAGGTAGACATTC
* * * * * * *
71936 AATTATATTCCGTTTTAACAAAAAATGTAAAAACAATTGAGCATAAAATCAATTTTGAGATAATA
65 AATTATAATCTGTTTTAACTAAAAATGTAAAAA-AATTGAACTTAAAATCAATTATGAGATTATA
** ** * * * *
72001 AAACTGTTTAAAATGGGTAATAAGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTT
129 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCTT
72064 TCAAATAATT
Statistics
Matches: 2076, Mismatches: 449, Indels: 144
0.78 0.17 0.05
Matches are distributed among these distances:
339 1 0.00
340 18 0.01
341 210 0.10
342 488 0.24
343 166 0.08
344 401 0.19
345 771 0.37
346 21 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (342 bp):
GACTATAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTAAGGTAGACATTCA
ATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGATTATAAA
ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGTGACTATAAATAGACTTTTCTTGCTA
ATGAATACCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAATAA
TGTAAAAAAAATTGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
CTTTTGAAGGAATAGGA
Found at i:71596 original size:517 final size:512
Alignment explanation
Indices: 69125--72063 Score: 2382
Period size: 517 Copynumber: 5.7 Consensus size: 512
69115 NNNNNNNNNG
* * ****
69125 ACTATAAATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCATGTTTCTCGTTATAGACATTCA
1 ACTATAAATAGACTTTTCTTACTAATGAATA-CTTTTTCTTCATGTTTCTCAAGGTAGACATTCA
* * * * *
69190 ATTATAGTCTGTTTTAACCAA-AAGTGT-AAAAACATTTAACTTAAAATCAATTATGAAATTATA
65 ATTATAATCTATTTTAACCAATAA-TGTAAAAAAAATTGAACTTAAAATCAATTATGAGATTATA
* *
69253 AAA-CTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGAGATTATAAATAGACTTTTCTTG
129 AAATC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTG
* * * * * * * * * ** *
69317 TCAATAAATGCTTTTCTCTTCATGTTTTTTAAGGAAAAAATTCAATTATCGTTTGTTTTAACTAA
193 CCAATGAATACTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACTAA
* *** * * ** * * *********
69382 AAATTTTAAAACAATTAAGTATAAAATCAATT-TGAGTTTATAAAACTATTTAAAGNNNNNNNNN
258 TAATGCAAAAAAAATTGA-CCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * ** * * *
69446 NGGCTTTTGAAAGAATGGGTGACTATCAGTAGACTTTTCTTGGCAATGAATGTCTTTTTCTTCAT
322 AGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTTACCAATGAATGCCTTTAT-TTCAC
* ** ********** * * * * * *
69511 GTTTCTCAAGGTAGACATTCAANNNNNNNNNNTTTTAA-TGAAAAATGTTAAACAATTTG-ACTT
386 ATTTCTTGAGGTAGACATTCAATTATAATCAGTTTTAACT-AATAATATAAAAAAAATTGAACCT
* * * * * **
69574 AAAATCATTTATGAGATTATAAAATCATTTAAAGTGACTAATAAGGCTTTCGAAGGGATAGG-T
450 AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAAT-GGAT
* * * * ***** * ** **
69637 GACTATACATGGACTTTTCTTTCAAAT-AATTGGGCTTC-TCTATGCAATTCGTGGAGCAAGA-A
1 -ACTATAAATAGACTTTTCTTACTAATGAATACTTTTTCTTC-ATG--TTTC-TCAAGGTAGACA
* * * * * * * *
69699 TTCAATTATAGTCTATTTTAATCAAGAATGT--AAAAAATTCAACCTAAAATCAACTACGATATT
61 TTCAATTATAATCTATTTTAACCAATAATGTAAAAAAAATTGAACTTAAAATCAATTATGAGATT
* ********** * * * * ** *
69762 ATAAAACCATTTAAAGCGAGNNNNNNNNNNTTTGAAAGATTGGGTGACTATACCTAGTCTTTTCT
126 ATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCT
* * * * * * *
69827 TGCCAATGAATGCTTTTTTCTTCACGTTTCACGAGGTAGACAATCAAGTATAATCTGTTTTAACC
191 TGCCAATGAATACTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACT
* ********** * **
69892 AAAAATG-NNNNNNNNNNGAAACTTAAAATCAATGT-TGAGATTATAAAACCATTTAAATTGAGT
256 AATAATGCAAAAAAAATTG--ACCTAAAATCAAT-TATGAGATTATAAAACCATTTAAAGCGAGT
* * **
69955 AATAAGGCTTTTGAAAGAAT-GAGTGACTATAAATAGACTTTTCTTATCAATGAATGCCTTTNNN
318 AATAAGGCTTTTGAAAGAATAG-GAGACTATAAATAGACTTTTCTTACCAATGAATGCCTTT-AT
******* * *
70019 NNNNNNNTTCTTGAGGTAAACATTCAATTATAGT-ATGTTTTAA-TGACA-AATATAAAAAAAAT
381 TTCACATTTCTTGAGGTAGACATTCAATTATAATCA-GTTTTAACT-A-ATAATATAAAAAAAAT
* * * * * * *
70081 TTAACTTAAAATTAATTATCAGATTACAAAACCATTTAAAGCGAATAATAAGGCTTTTGAAGGAA
443 TGAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAA
* *
70146 CGGAAG
508 TGG-AT
* * * * * *
70152 ACTATAAATGGACTTTTCTTGCTGACGAATACTTTTT-TGCTCATGTTTGTTAAGGTAGACATTC
1 ACTATAAATAGACTTTTCTTACTAATGAATACTTTTTCT--TCATGTTTCTCAAGGTAGACATTC
* * * * * * *
70216 AATTATATTCTATTTTAACAAAAAATGTAAAAAAACTTCAACTTAAAATTAATTATAAGATTATA
64 AATTATAATCTATTTTAACCAATAATGTAAAAAAAATTGAACTTAAAATCAATTATGAGATTATA
********** *
70281 ANNNNNNNNNNAGCGAGTAATAAGGCTTTTGAAGGAATCG-GTGACTATAAATAGACTTTTCTTG
129 AAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT-GAGAGACTATAAATAGACTTTTCTTG
* * *
70345 CCAATGAATACCTTTTTCTTCAGGTTTCTCAAGGTAGGA-ATTCAATTATAATCTGTTTTAACCA
193 CCAATGAATACTTTTTTCTTCATGTTTCTCAAGGTA-GACATTCAATTATAATCTGTTTTAACTA
* * *
70409 ATAATGCAAAAACAAATTGAACCTAAAATCAATTATGAAATTATAAAGCCATTTAAAGCGAGTAG
257 ATAATGCAAAAA-AAATTG-ACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * * * * * * *
70474 TAAGGCTTTTGGACGAGTAGGAGAATATAACTGGAC-TTTCATTGCTAATGAATACCTTTCACTT
320 TAAGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTC-TTACCAATGAATGCCTTT-ATTT
** * * * * * *
70538 CATGTTTCCTGAGGTCGACATTCAATTATAATCTGTTTTAACTAAAAATGTAGAAAAAATTGAAC
383 CACATTTCTTGAGGTAGACATTCAATTATAATCAGTTTTAACTAATAATATAAAAAAAATTGAAC
* * * *
70603 TTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATTGGT
448 CTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA-GAAATGGA
70668 T
512 T
* * * ** *
70669 ACTATAAATGGACTTTTCTTGCTAATGAATACTTTTTCTTCACGTTTCTTGAGGTAGAAATTCAA
1 ACTATAAATAGACTTTTCTTACTAATGAATACTTTTTCTTCATGTTTCTCAAGGTAGACATTCAA
* * * * * *
70734 TTATAATTTGTTTTAACCAATAATGTAAAAACAATTAAACCTAAAATCAATTATGAGACTATAAA
66 TTATAATCTATTTTAACCAATAATGTAAAAAAAATTGAACTTAAAATCAATTATGAGATTATAAA
* ** * **
70799 A-CTTTTAAAATAGAATAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTAATTGCC
131 ATCATTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCC
* * *
70863 AATGAATACTTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATATTCTGTTTTAA-TAAAA
195 AATGAATACTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACT-AAT
* * * * *
70927 AATG-TAAAAAAA-TCACCTTAAAATCAATTATGAAATTATAAAACCATTTAAAGCTAGTAATAT
259 AATGCAAAAAAAATTGACC-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * * * * *
70990 GGCTTTTGAAGGAATGGGTGACTATAAGA-AGACTTTTCTTACTAATAAATGCCTTTCTCCTCAC
323 GGCTTTTGAAAGAATAGGAGACTATAA-ATAGACTTTTCTTACCAATGAATGCCTTTAT-TTCAC
* * *
71054 ATTTCTTGAGGTAGACATTCAATTATAATCAATTTTAACCAATAATATAAAAAAAATTGAACCAA
386 ATTTCTTGAGGTAGACATTCAATTATAATCAGTTTTAACTAATAATATAAAAAAAATTGAACCTA
* * *
71119 AAATCAATTATGAGATTATAAAACTATTTACTA-CGAGTAATAAGACTTTTGAAGAAATGAGAT
451 AAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGAAATG-GAT
* * * *
71182 ACTATAAATAGATTTTTCTTACCAATGAATACTTCTTTCTTTATGTTTCTCAAGGTAGACATTAA
1 ACTATAAATAGACTTTTCTTACTAATGAATACTT-TTTCTTCATGTTTCTCAAGGTAGACATTCA
* * * *
71247 ATTATAAACCATTTTAACCAATAATGTAAAAGAAAATTGAGCTTAAAATTAATTATGAGATTATA
65 ATTATAATCTATTTTAACCAATAATGTAAAA-AAAATTGAACTTAAAATCAATTATGAGATTATA
* *
71312 AAATCATTTAACA-CGAGTAATAAGGCCTTTGAAGGAATTG-GAGACTATAAATGGACTTTTCTT
129 AAATCATTTAA-AGCGAGTAATAAGGCTTTTGAAGGAA-TGAGAGACTATAAATAGACTTTTCTT
* * * * *
71375 GCCAATAAATATTTTTTTCTTCATGTTTCTCATGGTAGACACTCAATTATAATCTATTTTAACTA
192 GCCAATGAATACTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACTA
71440 ATAATAG-AAAAAAAATTGATCCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
257 ATAAT-GCAAAAAAAATTGA-CCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * *
71504 TAAGGCTTTTGAAGGAATAGGAGACTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTTGTC
320 TAAGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTTACCAATGAATGCCTTTATT-TC
* ** * * *
71569 ACATTTC-TCATGGTAGACATTCAATTATAATTTGTTTTAATTAATAATGTAAAAAAAAATTGAT
384 ACATTTCTTGA-GGTAGACATTCAATTATAATCAGTTTTAACTAATAATAT-AAAAAAAATTGAA
* * * *
71633 CCTAAAATCAATTATGAGATTATAAAACCATTGAAAGTGAGCAATAAGGCTTTTGAAGAAAT-AA
447 CCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATGGA
71697 GT
512 -T
* * *
71699 AACTATAAATAGACTTTTC-CAGCTAATGAATACCTTTTTCCTCATGTTTCTCAGGGTAGACATT
1 -ACTATAAATAGACTTTTCTTA-CTAATGAATA-CTTTTTCTTCATGTTTCTCAAGGTAGACATT
* * ** *
71763 CAATTATAATCTGTTTCAACTGATAATGTAAAAAAAATTGAACTTAAAATCAATTACGAGATTAT
63 CAATTATAATCTATTTTAACCAATAATGTAAAAAAAATTGAACTTAAAATCAATTATGAGATTAT
*
71828 AAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTG
128 AAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTG
* * ** * * * *
71893 CCAATGAATGCTTTTTTCTTCATGTTTCTCAAGGTAAAGGTTTAATTATATTCCGTTTTAACAAA
193 CCAATGAATACTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACTAA
* * * * * * ** ** *
71958 AAATGTAAAAACAATTGAGCATAAAATCAATTTTGAGATAATAAAACTGTTTAAAATGGGTAATA
258 TAATGCAAAAAAAATTGA-CCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
72023 AGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTT
322 AGGCTTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTT
72064 TCAAATAATT
Statistics
Matches: 1935, Mismatches: 425, Indels: 128
0.78 0.17 0.05
Matches are distributed among these distances:
510 2 0.00
511 6 0.00
512 146 0.08
513 387 0.20
514 171 0.09
515 145 0.07
516 336 0.17
517 587 0.30
518 152 0.08
519 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (512 bp):
ACTATAAATAGACTTTTCTTACTAATGAATACTTTTTCTTCATGTTTCTCAAGGTAGACATTCAA
TTATAATCTATTTTAACCAATAATGTAAAAAAAATTGAACTTAAAATCAATTATGAGATTATAAA
ATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCA
ATGAATACTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACTAATAA
TGCAAAAAAAATTGACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
TTTTGAAAGAATAGGAGACTATAAATAGACTTTTCTTACCAATGAATGCCTTTATTTCACATTTC
TTGAGGTAGACATTCAATTATAATCAGTTTTAACTAATAATATAAAAAAAATTGAACCTAAAATC
AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATGGAT
Done.