Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397874.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1179.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32808

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--508
172
3.0
172
78
4
485
33
13
13
37
1.84
1893--3368
171
8.6
171
82
3
1585
38
11
13
35
1.81
6938--7004
31
2.2
31
91
0
107
22
17
8
50
1.74
8936--9264
171
2.0
161
79
6
345
37
13
11
34
1.81
11805--12130
172
1.9
173
83
3
426
39
15
12
32
1.85
13134--13534
171
2.3
173
81
5
492
36
15
10
37
1.82
20123--20867
171
4.4
169
72
4
575
34
12
10
38
1.78
22304--22636
172
2.0
162
84
3
348
35
13
12
35
1.82
23409--23787
171
2.2
170
82
5
444
37
11
14
36
1.83
23816--24285
171
2.7
171
81
5
488
37
11
15
35
1.82
26277--26639
171
2.1
171
81
1
413
37
9
14
35
1.80
27952--28341
170
2.3
172
77
6
398
35
13
10
40
1.78
28892--29205
170
1.9
161
78
9
247
33
13
12
36
1.83
30515--30840
172
1.9
171
82
5
408
34
15
13
37
1.86

Tables:   1

The End!