Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397885.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_119.1, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.31

Warning! 194 characters in sequence are not A, C, G, or T


Found at i:685 original size:170 final size:171

Alignment explanation


    Indices: 481--795  Score: 445
    Period size: 171  Copynumber: 1.8  Consensus size: 171

        471 TTCCTAGGGT

                         *                                                 * 
        481 AAACATTCAATTATAATCTATTTTAATCAAAAATATAAAA-AATTCAACTTAAAATCAATTATGA
          1 AAACATTCAATTACAATCTATTTTAATCAAAAATATAAAACAATTCAACTTAAAATCAATTATCA

                **          *               *                          *     
        545 AATTGTAAAACCATTTGAAGTGAGTAATAAGGCTTTTAAAGGCATGAGTGACTATAAATGGACTT
         66 AATTACAAAACCATTTAAAGTGAGTAATAAGGATTTTAAAGGCATGAGTGACTATAAATAGACTT

                  *                                  
        610 TTCTTGTCAATGAATGGCTTTGCATTCATGTTTCACACAAC
        131 TTCTTGCCAATGAATGGCTTTGCATTCATGTTTCACACAAC

                   **          *                                             
        651 AAACATTTGATTACAATCTGTTTTAA-CTAAAAATATAAAACAATTCAACTTAAAATCAATTATC
          1 AAACATTCAATTACAATCTATTTTAATC-AAAAATATAAAACAATTCAACTTAAAATCAATTATC

             *          *           *             * *  *   *                 
        715 AGATTACAAAACTATTTAAAGTGATTAATAAGGATTTTGATGGGATGGGTGACTATAAATAGACT
         65 AAATTACAAAACCATTTAAAGTGAGTAATAAGGATTTTAAAGGCATGAGTGACTATAAATAGACT

                            
        780 TTTCTTGCCAATGAAT
        130 TTTCTTGCCAATGAAT

        796 ATATTTTTTT


Statistics
Matches: 125,  Mismatches: 18, Indels: 3
        0.86            0.12        0.02

Matches are distributed among these distances:
 169    1  0.01
 170   34  0.27
 171   90  0.72

ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34


Consensus pattern (171 bp):   
AAACATTCAATTACAATCTATTTTAATCAAAAATATAAAACAATTCAACTTAAAATCAATTATCA
AATTACAAAACCATTTAAAGTGAGTAATAAGGATTTTAAAGGCATGAGTGACTATAAATAGACTT
TTCTTGCCAATGAATGGCTTTGCATTCATGTTTCACACAAC

Done.