Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397911.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1217.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10589
ACGTcount: A:0.17, C:0.06, G:0.09, T:0.19

Warning! 5226 characters in sequence are not A, C, G, or T


Found at i:8861 original size:35 final size:35

Alignment explanation


    Indices: 8815--8909  Score: 154
    Period size: 35  Copynumber: 2.7  Consensus size: 35

       8805 NNNNNNNNNN

                                      *        
       8815 AGCCTTTGAAAAGCCATTGTAGAAGGTTGTGGCTG
          1 AGCCTTTGAAAAGCCATTGTAGAAGGATGTGGCTG

                 *      *       *              
       8850 AGCCTATGAAAAACCATTGTTGAAGGATGTGGCTG
          1 AGCCTTTGAAAAGCCATTGTAGAAGGATGTGGCTG

                                     
       8885 AGCCTTTGAAAAGCCATTGTAGAAG
          1 AGCCTTTGAAAAGCCATTGTAGAAG

       8910 CTTAAGCTTG


Statistics
Matches: 53,  Mismatches: 7, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  35   53  1.00

ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26


Consensus pattern (35 bp):   
AGCCTTTGAAAAGCCATTGTAGAAGGATGTGGCTG
Done.