genome.fa.s661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397914.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_122.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52719

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1935--3392	342	4.3	339	75	5	990	37	11	13	33	1.81
1324--3392	171	12.1	169	72	6	860	36	11	13	33	1.81
4934--5284	170	2.1	171	81	2	402	35	13	12	35	1.83
6433--7798	170	8.0	170	74	4	672	36	10	13	33	1.79
8087--9164	170	6.4	169	79	9	951	37	10	16	36	1.82
8194--8991	327	2.4	328	83	8	922	38	9	15	35	1.81
8194--9164	327	2.9	321	78	11	904	38	10	15	35	1.82
8711--9215	170	3.0	171	81	7	582	38	10	15	35	1.83
10593--10908	168	1.9	158	82	4	312	39	10	10	37	1.73
11981--12022	20	2.1	20	86	0	57	38	7	9	45	1.64
11729--14227	171	14.5	171	72	8	768	38	10	13	34	1.79
13779--14234	174	2.7	171	80	5	474	41	10	14	33	1.80
21021--21333	171	1.9	161	82	5	319	35	13	13	34	1.83
21949--22793	171	4.9	171	80	3	894	34	13	13	38	1.83
21949--22793	341	2.5	341	76	7	841	34	13	13	38	1.83
23488--23987	172	3.0	162	76	13	402	35	14	12	35	1.84
23136--24144	170	5.9	169	76	5	780	34	14	11	37	1.82
23136--24144	341	3.0	343	77	5	814	34	14	11	37	1.82
24308--24901	172	3.5	172	85	3	743	35	15	12	36	1.85
25855--26460	171	3.5	169	77	4	572	36	11	13	35	1.81
30157--30625	172	2.8	162	79	8	386	33	13	9	39	1.77
35398--36368	171	5.7	171	75	4	739	35	11	11	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37254--38853	171	9.4	169	79	6	1491	34	13	12	38	1.83
37254--38797	341	4.5	335	80	6	1492	34	13	12	38	1.84
45111--45528	171	2.4	171	75	3	385	34	13	11	38	1.80

Tables:   1

The End!