Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397939.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1243.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2014
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.24

Warning! 820 characters in sequence are not A, C, G, or T


Found at i:1141 original size:169 final size:170

Alignment explanation


    Indices: 819--1203  Score: 443
    Period size: 169  Copynumber: 2.3  Consensus size: 170

        809 CATTGGCAAG

                   *        * * *  *                           *             
        819 AAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCGCTTTGAATGGTTTTATAA
          1 AAAAGTCTATTTATAGCCTCACAGTCCTTCAAAAGCCTTATTACTCGC-TTAAATGGTTTTATAA

             *                   *                             *             
        884 TGTCATAATTGATTTTAAATTGAATTTTTTAATAATTTTAGTTAAAACAGACTATAATTAAATGT
         65 TCTCATAATTGATTTTAAATTCAATTTTTTAATAATTTTAGTTAAAACAGAATATAATTAAATGT

                        *   *                  * *   
        949 CTGCCTTAAGAACCGTGAAGAAAAAAACATTCATTGATAAC
        130 CTGCCTTAAGAAACGTAAAGAAAAAAACATTCATTAACAAC

                                            *      *                         
        990 AAAAGTCTATTTATAGCCTCACAGTCCTTCAACAGCCTTTTTACTC-C-TAAATGGTTTTATAAT
          1 AAAAGTCTATTTATAGCCTCACAGTCCTTCAAAAGCCTTATTACTCGCTTAAATGGTTTTATAAT

                             *    *       *         **  *               *    
       1053 CTCATAATTGATTTTAAGTTCAGTTTTTT-TTACATTTTTCTTTGAAACAGAATATAATTGAATG
         66 CTCATAATTGATTTTAAATTCAATTTTTTAATA-A-TTTTAGTTAAAACAGAATATAATTAAATG

                     *                 *             *
       1117 TCTGCCTTAGGAAACGTAAAGAAAAAAGCATTCATTAACAAG
        129 TCTGCCTTAAGAAACGTAAAGAAAAAAACATTCATTAACAAC

                *        *      *  *  *  *               
       1159 AAAAATCTATTTACAGCCTCTCATTCTTTTAAAAGCCTTATTACT
          1 AAAAGTCTATTTATAGCCTCACAGTCCTTCAAAAGCCTTATTACT

       1204 TACTTNNNNN


Statistics
Matches: 179,  Mismatches: 33, Indels: 6
        0.82            0.15        0.03

Matches are distributed among these distances:
 167    2  0.01
 168   41  0.23
 169   96  0.54
 170    1  0.01
 171   39  0.22

ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38


Consensus pattern (170 bp):   
AAAAGTCTATTTATAGCCTCACAGTCCTTCAAAAGCCTTATTACTCGCTTAAATGGTTTTATAAT
CTCATAATTGATTTTAAATTCAATTTTTTAATAATTTTAGTTAAAACAGAATATAATTAAATGTC
TGCCTTAAGAAACGTAAAGAAAAAAACATTCATTAACAAC
Done.