Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10072460
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 70252 characters in sequence are not A, C, G, or T
File 16 of 20
Found at i:6905215 original size:42 final size:42
Alignment explanation
Indices: 6905159--6905298 Score: 124
Period size: 42 Copynumber: 3.4 Consensus size: 42
6905149 AAAATTAATT
* * * * *
6905159 TAAATTATTTATATTTTAACCATAATAA-CATTCAATTATAAA
1 TAAAATATTAATATTTTAA-AATAATAATAATTAAATTATAAA
* **
6905201 TAAAATATTAATATTGTAAAATGTTAATAATTAAATTATAAA
1 TAAAATATTAATATTTTAAAATAATAATAATTAAATTATAAA
* * ** *
6905243 TAACATATTCATATTTT-AAATGTTAATGATTAAATTAT-AA
1 TAAAATATTAATATTTTAAAATAATAATAATTAAATTATAAA
*
6905283 TAAAATATCAATATTT
1 TAAAATATTAATATTT
6905299 AAATTATCAA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 15 0.18
41 25 0.30
42 42 0.51
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (42 bp):
TAAAATATTAATATTTTAAAATAATAATAATTAAATTATAAA
Found at i:6905276 original size:41 final size:41
Alignment explanation
Indices: 6905192--6905302 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 41
6905182 AATAACATTC
* *
6905192 AATTATAAATAAAATATTAATATTGTAAAATGTTAATAATTA
1 AATTATAAATAAAATATTCATATT-TTAAATGTTAATAATTA
* *
6905234 AATTATAAATAACATATTCATATTTTAAATGTTAATGATTA
1 AATTATAAATAAAATATTCATATTTTAAATGTTAATAATTA
6905275 AATTAT-AATAAAATA-TCA-ATATTTAAAT
1 AATTATAAATAAAATATTCATAT-TTTAAAT
6905303 TATCAATTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.03
39 10 0.16
40 8 0.13
41 21 0.33
42 22 0.35
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (41 bp):
AATTATAAATAAAATATTCATATTTTAAATGTTAATAATTA
Found at i:6905321 original size:41 final size:39
Alignment explanation
Indices: 6905192--6905321 Score: 129
Period size: 41 Copynumber: 3.2 Consensus size: 39
6905182 AATAACATTC
*
6905192 AATTATAAATAAAATATTAATATTGTAAAATGTTAATAATTA
1 AATTATAAATAAAATATCAATATT-T-AAAT-TTAATAATTA
* *
6905234 AATTATAAATAACATATTC-ATATTTTAAATGTTAATGATTA
1 AATTATAAATAAAATA-TCAATA-TTTAAAT-TTAATAATTA
*
6905275 AATTAT-AATAAAATATCAATATTTAAATTATCAATTATTA
1 AATTATAAATAAAATATCAATATTTAAATT-T-AATAATTA
6905315 ATATTAT
1 A-ATTAT
6905322 TTAAAAATTA
Statistics
Matches: 77, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
38 1 0.01
39 10 0.13
40 19 0.25
41 25 0.32
42 19 0.25
43 3 0.04
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (39 bp):
AATTATAAATAAAATATCAATATTTAAATTTAATAATTA
Found at i:6905335 original size:25 final size:28
Alignment explanation
Indices: 6905307--6905357 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
6905297 TTAAATTATC
6905307 AATTATTAAT-AT-TATT-TAAAAATTA
1 AATTATTAATAATATATTATAAAAATTA
*
6905332 AATTTTTAATAATATATTATAAAAAT
1 AATTATTAATAATATATTATAAAAAT
6905358 ATATTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 2 0.09
27 4 0.18
28 7 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
AATTATTAATAATATATTATAAAAATTA
Found at i:6905443 original size:26 final size:26
Alignment explanation
Indices: 6905413--6905476 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
6905403 TAATATCATA
*
6905413 TAAATTATAAATAAAATATTAAT-TAT
1 TAAATTATAAATAAAATATTACTAT-T
* *
6905439 TAAATTATAATTAAAATATTGCTATT
1 TAAATTATAAATAAAATATTACTATT
6905465 TAAATTATAAAT
1 TAAATTATAAAT
6905477 TACCAATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 32 0.97
27 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TAAATTATAAATAAAATATTACTATT
Found at i:6905566 original size:139 final size:140
Alignment explanation
Indices: 6905397--6905663 Score: 321
Period size: 139 Copynumber: 1.9 Consensus size: 140
6905387 ATTTATATTT
* * **
6905397 TAATCATAATATCATATAAATTATAAATAAAATATT-AATTATTAAATTATAATTAAAATATTGC
1 TAATCATAATATCATATAAATTATAAATAAAATATTAAATT-TTAAAATATAAATAAAATATTAA
*
6905461 TATTTAAATTATAAATTACCAATATTTTAAATAAACT-ATAAAAAATTAATA-TTTAAAA-AATA
65 TATTTAAATAATAAATTACCAAT-TTTTAAATAAA-TAATAAAAAATTAATATTTTAAAATAATA
6905523 AAATACATATAAC
128 AAATACATATAAC
* *
6905536 TAATCATAATAAT-ATTTAAACTT-TAAATAAAATTTTAAAATTTTAAAATATAAATAAAATATT
1 TAATCATAAT-ATCATATAAA-TTATAAATAAAATATT-AAATTTTAAAATATAAATAAAATATT
* *** **
6905599 AATATTTAAATAATCAATTATTGATTTTTAAATAAATAATAAATTATTAATATTTTAAAATAATA
63 AATATTTAAATAATAAATTACCAATTTTTAAATAAATAATAAAAAATTAATATTTTAAAATAATA
6905664 TAAAATAAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
138 1 0.01
139 51 0.47
140 48 0.44
141 8 0.07
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (140 bp):
TAATCATAATATCATATAAATTATAAATAAAATATTAAATTTTAAAATATAAATAAAATATTAAT
ATTTAAATAATAAATTACCAATTTTTAAATAAATAATAAAAAATTAATATTTTAAAATAATAAAA
TACATATAAC
Found at i:6905589 original size:27 final size:27
Alignment explanation
Indices: 6905550--6905605 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
6905540 CATAATAATA
* * *
6905550 TTTAAACTTTAAATAAAATTTTAAAAT
1 TTTAAAATATAAATAAAATATTAAAAT
*
6905577 TTTAAAATATAAATAAAATATTAATAT
1 TTTAAAATATAAATAAAATATTAAAAT
6905604 TT
1 TT
6905606 AAATAATCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TTTAAAATATAAATAAAATATTAAAAT
Found at i:6905593 original size:19 final size:19
Alignment explanation
Indices: 6905571--6905611 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
6905561 AATAAAATTT
*
6905571 TAAAATTTTAAAATATAAA
1 TAAAATATTAAAATATAAA
* *
6905590 TAAAATATTAATATTTAAA
1 TAAAATATTAAAATATAAA
6905609 TAA
1 TAA
6905612 TCAATTATTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAATATTAAAATATAAA
Found at i:6905636 original size:26 final size:28
Alignment explanation
Indices: 6905605--6905666 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 28
6905595 TATTAATATT
* *
6905605 TAAATAATCAATTATTGAT-TTTT-AAA
1 TAAATAATAAATTATTAATATTTTAAAA
6905631 TAAATAATAAATTATTAATATTTTAAAA
1 TAAATAATAAATTATTAATATTTTAAAA
6905659 TAATATAA
1 TAA-ATAA
6905667 AATAAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 17 0.55
27 4 0.13
28 6 0.19
29 4 0.13
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
TAAATAATAAATTATTAATATTTTAAAA
Found at i:6905667 original size:26 final size:25
Alignment explanation
Indices: 6905561--6905667 Score: 82
Period size: 26 Copynumber: 4.3 Consensus size: 25
6905551 TTAAACTTTA
*
6905561 AATA-AAATT-TTAAAATTTTAAAAT
1 AATATAAATTATTAATATTTT-AAAT
* *
6905585 ATAAATAAAATATTAATA-TTTAAAT
1 A-ATATAAATTATTAATATTTTAAAT
* *
6905610 -A-ATCAATTATTGAT-TTTTAAAT
1 AATATAAATTATTAATATTTTAAAT
6905632 AAATAATAAATTATTAATATTTTAAAAT
1 -AAT-ATAAATTATTAATATTTT-AAAT
6905660 AATATAAA
1 AATATAAA
6905668 ATAAAAATAA
Statistics
Matches: 65, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
22 17 0.26
23 1 0.02
24 2 0.03
25 6 0.09
26 23 0.35
27 12 0.18
28 4 0.06
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (25 bp):
AATATAAATTATTAATATTTTAAAT
Found at i:6905702 original size:38 final size:38
Alignment explanation
Indices: 6905628--6905702 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 38
6905618 ATTGATTTTT
* * *
6905628 AAATAAATAATAAATTATTAATATTTTAAAATAATATA
1 AAATAAATAATAAATAATTAATATTGTAAAAAAATATA
6905666 AAATAAA-AATAAATAATT-ATATATGTAATAAAAATAT
1 AAATAAATAATAAATAATTAATAT-TGTAA-AAAAATAT
6905703 TTTTATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (38 bp):
AAATAAATAATAAATAATTAATATTGTAAAAAAATATA
Found at i:6905829 original size:5 final size:5
Alignment explanation
Indices: 6905821--6905868 Score: 60
Period size: 5 Copynumber: 9.2 Consensus size: 5
6905811 TATATAATAA
* *
6905821 TTATT TTATT TTATT TTATA TAATAT TTATT TTATT TTATTT TTATT T
1 TTATT TTATT TTATT TTATT TTAT-T TTATT TTATT TTA-TT TTATT T
6905869 ATTCCGTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
5 29 0.78
6 8 0.22
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (5 bp):
TTATT
Found at i:6905850 original size:26 final size:26
Alignment explanation
Indices: 6905810--6905863 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
6905800 TCATATTAAA
6905810 TTATATAATAATTATTTTATTTTATT
1 TTATATAATAATTATTTTATTTTATT
*
6905836 TTATATAATATTTATTTTATTTTATT
1 TTATATAATAATTATTTTATTTTATT
6905862 TT
1 TT
6905864 TATTTATTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TTATATAATAATTATTTTATTTTATT
Found at i:6906350 original size:29 final size:30
Alignment explanation
Indices: 6906317--6906377 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
6906307 TTTTAAACTA
6906317 TTTTAAAAAATTTAAAT-AAGTCTTA-ATTT
1 TTTTAAAAAATTT-AATCAAGTCTTATATTT
* *
6906346 TTTTAATATATTTAATCAAGTCTTATATTT
1 TTTTAAAAAATTTAATCAAGTCTTATATTT
6906376 TT
1 TT
6906378 ATTTAGATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 3 0.11
29 19 0.68
30 6 0.21
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (30 bp):
TTTTAAAAAATTTAATCAAGTCTTATATTT
Found at i:6906525 original size:12 final size:14
Alignment explanation
Indices: 6906507--6906536 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6906497 TTATCGTGTC
6906507 ATATATATCACGTT
1 ATATATATCACGTT
6906521 ATATATATCACGTT
1 ATATATATCACGTT
6906535 AT
1 AT
6906537 TATCAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (14 bp):
ATATATATCACGTT
Found at i:6907257 original size:18 final size:17
Alignment explanation
Indices: 6907208--6907263 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
6907198 TTTGAGTCAA
* *
6907208 AATTGATTAAAAATATT
1 AATTTATTAAAATTATT
6907225 -ATTTAATTAAAATTATT
1 AATTT-ATTAAAATTATT
6907242 AATTTATT-AAA-TATT
1 AATTTATTAAAATTATT
6907257 AATTTAT
1 AATTTAT
6907264 ATAAGTTACA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 11 0.31
16 6 0.17
17 14 0.40
18 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
AATTTATTAAAATTATT
Found at i:6907258 original size:15 final size:16
Alignment explanation
Indices: 6907217--6907263 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 16
6907207 AAATTGATTA
6907217 AAAATATT-ATTTAATT
1 AAAATATTAATTT-ATT
6907233 AAAATTATTAATTTATT
1 AAAA-TATTAATTTATT
6907250 -AAATATTAATTTAT
1 AAAATATTAATTTAT
6907264 ATAAGTTACA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.38
16 7 0.24
17 7 0.24
18 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AAAATATTAATTTATT
Found at i:6909699 original size:22 final size:22
Alignment explanation
Indices: 6909647--6909716 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
6909637 TTTAAAGAAT
*
6909647 ATTTTTATTATATTTAATTAATT
1 ATTTTT-TTATATTTAATTAATA
*
6909670 TTTATTTTTAT-TTTAATTAAATA
1 ATT-TTTTTATATTTAATT-AATA
*
6909693 A-TTTTTTATAATTAA-TAATTA
1 ATTTTTTTATATTTAATTAA-TA
6909714 ATT
1 ATT
6909717 AACTGTTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
20 2 0.05
21 11 0.29
22 13 0.34
23 9 0.24
24 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTTTTATATTTAATTAATA
Found at i:6909701 original size:27 final size:26
Alignment explanation
Indices: 6909646--6909698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6909636 TTTTAAAGAA
* *
6909646 TATTTTTATTATATTTAATTAATTTT
1 TATTTTTATTATAATTAAATAATTTT
*
6909672 TATTTTTATTTTAATTAAATAATTTT
1 TATTTTTATTATAATTAAATAATTTT
6909698 T
1 T
6909699 TATAATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
TATTTTTATTATAATTAAATAATTTT
Found at i:6909715 original size:21 final size:21
Alignment explanation
Indices: 6909674--6909716 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
6909664 TTAATTTTTA
*
6909674 TTTTTATTTTAATTAAATAAT
1 TTTTTATATTAATTAAATAAT
*
6909695 TTTTTATAATTAA-TAATTAAT
1 TTTTTAT-ATTAATTAAATAAT
6909716 T
1 T
6909717 AACTGTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTTATATTAATTAAATAAT
Found at i:6911589 original size:4 final size:4
Alignment explanation
Indices: 6911582--6911611 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
6911572 CCTCTCTCTC
6911582 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
6911612 AGTATCTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
TCTT
Found at i:6920466 original size:15 final size:15
Alignment explanation
Indices: 6920430--6920467 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
6920420 CACAGATCAA
*
6920430 GATGATCATGAGATT
1 GATGATGATGAGATT
*
6920445 GATGATGATGAGTTT
1 GATGATGATGAGATT
6920460 GATGATGA
1 GATGATGA
6920468 AGTATTAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.34
Consensus pattern (15 bp):
GATGATGATGAGATT
Found at i:6946321 original size:48 final size:48
Alignment explanation
Indices: 6946250--6946346 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
6946240 GGACAGAGTC
* *
6946250 TTCTGGAAAGTGAAAGTGCCAAGTCATTGTAATGTATGATCTCGTTCA
1 TTCTGGAAAGTCAAAGTGCCAAGTCATTGTAATGTATGACCTCGTTCA
*
6946298 TTCTGGAAAGTCACAGTGCCAAGTCATTGTAATGTATGACCTCGTTCA
1 TTCTGGAAAGTCAAAGTGCCAAGTCATTGTAATGTATGACCTCGTTCA
6946346 T
1 T
6946347 ACACCTTAGT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (48 bp):
TTCTGGAAAGTCAAAGTGCCAAGTCATTGTAATGTATGACCTCGTTCA
Found at i:7008253 original size:2 final size:2
Alignment explanation
Indices: 7008246--7008273 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7008236 ATTAGAAATA
7008246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7008274 GAAATGACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7012810 original size:29 final size:27
Alignment explanation
Indices: 7012733--7012812 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 27
7012723 GTGACAAAGG
7012733 AAAAAAAAAATGAGAGAGA-GAAAATA
1 AAAAAAAAAATGAGAGAGAGGAAAATA
* * **
7012759 GAAAAAAAAATGAGCGATTGGAATTAATA
1 AAAAAAAAAATGAGAGAGAGGAA--AATA
*
7012788 AAAAAAAAAAAGAGAGAGAGGAAAA
1 AAAAAAAAAATGAGAGAGAGGAAAA
7012813 GGAAGCAAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
26 15 0.36
27 5 0.12
29 22 0.52
ACGTcount: A:0.68, C:0.01, G:0.21, T:0.10
Consensus pattern (27 bp):
AAAAAAAAAATGAGAGAGAGGAAAATA
Found at i:7019035 original size:14 final size:15
Alignment explanation
Indices: 7019016--7019053 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
7019006 AAAAATATAA
7019016 ATATATTAAAA-TTT
1 ATATATTAAAAGTTT
7019030 ATATATTAAAAGTTT
1 ATATATTAAAAGTTT
7019045 A-ATATTAAA
1 ATATATTAAA
7019054 TTAAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
ATATATTAAAAGTTT
Found at i:7028715 original size:71 final size:68
Alignment explanation
Indices: 7028600--7028741 Score: 257
Period size: 71 Copynumber: 2.0 Consensus size: 68
7028590 GTTTAGCTAT
7028600 ATTATCAGCTTATTTTGGGATACTTTGCTTTGTCACAAGGTTGTATTATATTGCCTTCAGCAAAT
1 ATTATCAGCTTATTTTGGGATACTTTGCTTTGTCACAAGGTTGTA-T-TATTGCCTTCAGCAAAT
7028665 TAACA
64 TAACA
7028670 ATTATCAGCTTATTTTTGGGATACTTTGCTTTGTCACAAGGTTGTATTATTGCCTTCAGCAAATT
1 ATTATCAGCTTA-TTTTGGGATACTTTGCTTTGTCACAAGGTTGTATTATTGCCTTCAGCAAATT
7028735 AACA
65 AACA
7028739 ATT
1 ATT
7028742 GCGTTCCAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
69 25 0.35
70 13 0.18
71 33 0.46
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (68 bp):
ATTATCAGCTTATTTTGGGATACTTTGCTTTGTCACAAGGTTGTATTATTGCCTTCAGCAAATTA
ACA
Found at i:7041805 original size:26 final size:23
Alignment explanation
Indices: 7041768--7041839 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 23
7041758 AAGATATACT
7041768 TATTTAGTATATAATAAATCAAATTA
1 TATTTA-TATATAATAAAT--AATTA
7041794 TATTTATCATATAATTTAAATAATTA
1 TATTTAT-ATATAA--TAAATAATTA
7041820 TGATTTAATTATATAATAAA
1 T-ATTT-A-TATATAATAAA
7041840 ACTAAAATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
25 1 0.03
26 22 0.55
27 4 0.10
28 12 0.30
29 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (23 bp):
TATTTATATATAATAAATAATTA
Found at i:7052997 original size:18 final size:19
Alignment explanation
Indices: 7052960--7052998 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
7052950 TTTTATGAAT
*
7052960 TAATTTTAAGTTATTAATA
1 TAATTTTAAGTTAATAATA
7052979 TAATTTTAA-TTAATAATA
1 TAATTTTAAGTTAATAATA
7052997 TA
1 TA
7052999 TATAACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
TAATTTTAAGTTAATAATA
Found at i:7055805 original size:17 final size:16
Alignment explanation
Indices: 7055783--7055816 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7055773 CTCCAATATT
*
7055783 AAAAAGAGAAGTAAAAA
1 AAAAAGAAAAG-AAAAA
7055800 AAAAAGAAAAGAAAAA
1 AAAAAGAAAAGAAAAA
7055816 A
1 A
7055817 CTAATTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAAGAAAAA
Found at i:7056477 original size:18 final size:18
Alignment explanation
Indices: 7056454--7056490 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7056444 TCCAATATAG
*
7056454 ATTTTTATTTTTTAATTT
1 ATTTTTATTTTCTAATTT
*
7056472 ATTTTTCTTTTCTAATTT
1 ATTTTTATTTTCTAATTT
7056490 A
1 A
7056491 AGGAAGTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTTATTTTCTAATTT
Found at i:7056563 original size:25 final size:25
Alignment explanation
Indices: 7056530--7056582 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
7056520 TATGAATCGA
* * *
7056530 TGATTAGCTTTCGGCTTTCACGATT
1 TGATAAGCTATCGACTTTCACGATT
* *
7056555 TGATAAGCTATCGATTTTCATGATT
1 TGATAAGCTATCGACTTTCACGATT
7056580 TGA
1 TGA
7056583 AAAGTCTCCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (25 bp):
TGATAAGCTATCGACTTTCACGATT
Found at i:7058546 original size:22 final size:24
Alignment explanation
Indices: 7058516--7058572 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 24
7058506 TTAAATTTTA
*
7058516 TTATATTTAATATGATTATT-ATT
1 TTATATTTAATATAATTATTAATT
*
7058539 TTAT-TTTATTATAATTATTAATT
1 TTATATTTAATATAATTATTAATT
*
7058562 TTAAATTTAAT
1 TTATATTTAAT
7058573 TAAAAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 13 0.46
23 10 0.36
24 5 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TTATATTTAATATAATTATTAATT
Found at i:7058574 original size:25 final size:22
Alignment explanation
Indices: 7058498--7058612 Score: 73
Period size: 21 Copynumber: 5.4 Consensus size: 22
7058488 GAATTTTATA
*
7058498 TATTTATATTA-AATT-TTATTA
1 TATTTA-ATTATAATTATTATTT
*
7058519 TATTTAA-TATGATTATTATTT
1 TATTTAATTATAATTATTATTT
*
7058540 TATTTTATTATAATTATTAATTT
1 TATTTAATTATAATTATT-ATTT
** *
7058563 TAAATTTAATTA-AA--AAAATTA
1 T--ATTTAATTATAATTATTATTT
*
7058584 TATTTAATTATAAATATT-TTT
1 TATTTAATTATAATTATTATTT
*
7058605 TATATAAT
1 TATTTAAT
7058613 CGTATTAAGC
Statistics
Matches: 73, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
19 11 0.15
20 6 0.08
21 30 0.41
22 11 0.15
23 5 0.07
24 2 0.03
25 8 0.11
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (22 bp):
TATTTAATTATAATTATTATTT
Found at i:7058967 original size:18 final size:19
Alignment explanation
Indices: 7058934--7058972 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
7058924 GAGTAACAAT
7058934 GAAAACAAACG-AAAAAGG
1 GAAAACAAACGAAAAAAGG
7058952 GAAAACAAA-GAAAAAAAGG
1 GAAAACAAACG-AAAAAAGG
7058971 GA
1 GA
7058973 GGAAAAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.05
18 9 0.47
19 9 0.47
ACGTcount: A:0.69, C:0.08, G:0.23, T:0.00
Consensus pattern (19 bp):
GAAAACAAACGAAAAAAGG
Found at i:7069911 original size:42 final size:42
Alignment explanation
Indices: 7069864--7069972 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
7069854 CTTCAGTTCC
* *
7069864 AGCCCAAAGCCAGTTC-CAACAAGGTAACATTGCGTCTGTCCA
1 AGCCCAAAACCAG-TCGCAACAAGGTAACATTGCCTCTGTCCA
* * * *
7069906 AGCCCAAAATCCA-TCTCAACAAGGTCACGTTGCCTCTGTTCA
1 AGCCCAAAA-CCAGTCGCAACAAGGTAACATTGCCTCTGTCCA
*
7069948 AGCCCAAAATCAGTCGCAACAAGGT
1 AGCCCAAAACCAGTCGCAACAAGGT
7069973 CCTATCACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 4 0.07
42 50 0.88
43 3 0.05
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.19
Consensus pattern (42 bp):
AGCCCAAAACCAGTCGCAACAAGGTAACATTGCCTCTGTCCA
Found at i:7069973 original size:42 final size:42
Alignment explanation
Indices: 7069880--7069973 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
7069870 AAGCCAGTTC
* * *
7069880 CAACAAGGTAACATTGCGTCTGTCCAAGCCCAAAATCCATCT
1 CAACAAGGTCACATTGCCTCTGTCCAAGCCCAAAATCCATCG
* *
7069922 CAACAAGGTCACGTTGCCTCTGTTCAAGCCCAAAAT-CAGTCG
1 CAACAAGGTCACATTGCCTCTGTCCAAGCCCAAAATCCA-TCG
7069964 CAACAAGGTC
1 CAACAAGGTC
7069974 CTATCACTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 2 0.04
42 44 0.96
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (42 bp):
CAACAAGGTCACATTGCCTCTGTCCAAGCCCAAAATCCATCG
Found at i:7069986 original size:42 final size:42
Alignment explanation
Indices: 7069898--7070100 Score: 130
Period size: 42 Copynumber: 4.8 Consensus size: 42
7069888 TAACATTGCG
*
7069898 TCTGTCCAAGCCCAAAATCCA-TCTCAACAAGGTCACGT-TGC-C-
1 TCTGTTCAAGCCCAAAAT-CAGTCTCAACAAGGTC-C-TAT-CACT
*
7069940 TCTGTTCAAGCCCAAAATCAGTCGCAACAAGGTCCTATCACT
1 TCTGTTCAAGCCCAAAATCAGTCTCAACAAGGTCCTATCACT
* * * * * * *
7069982 TCTGTCTC-AGCTCATAACCAGCCTCAAAAAGGTCCAATTACT
1 TCTGT-TCAAGCCCAAAATCAGTCTCAACAAGGTCCTATCACT
** * * * **
7070024 TCTGTTCCTGCCCAAAATCTGTCTCAGCAAGGTCCTGTTGCT
1 TCTGTTCAAGCCCAAAATCAGTCTCAACAAGGTCCTATCACT
** * *
7070066 TCACTCCAAGTCTC-AAATCAGTCTCAACAAGGTCC
1 TCTGTTCAAG-CCCAAAATCAGTCTCAACAAGGTCC
7070101 CATGACTACA
Statistics
Matches: 125, Mismatches: 29, Indels: 14
0.74 0.17 0.08
Matches are distributed among these distances:
40 2 0.02
41 7 0.06
42 112 0.90
43 4 0.03
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.26
Consensus pattern (42 bp):
TCTGTTCAAGCCCAAAATCAGTCTCAACAAGGTCCTATCACT
Found at i:7086294 original size:18 final size:18
Alignment explanation
Indices: 7086271--7086306 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7086261 GCTTTCTTGT
7086271 ACAGAACCAAAGGATTAA
1 ACAGAACCAAAGGATTAA
7086289 ACAGAACCAAAGGATTAA
1 ACAGAACCAAAGGATTAA
7086307 GAAGGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.11
Consensus pattern (18 bp):
ACAGAACCAAAGGATTAA
Found at i:7100557 original size:658 final size:657
Alignment explanation
Indices: 7098541--7101168 Score: 2695
Period size: 658 Copynumber: 4.0 Consensus size: 657
7098531 AAATCCATCG
* * * *
7098541 TACTATATATTCAAATAAGCACCATTGTACTTTTATTACATAATAGGAATGCCACTTTAAATATA
1 TACTATATATTCATATAAGCACCATTGTGCCTTTATTACACAATAGGAATGCCACTTTAAATATA
* * * *
7098606 TTAAATATCTATCTTGCACCAAACTATCTTGGATTAAATAATAAGAAT-CACCATGTATCAAGAT
66 TT-AATA--TATCTTGCACCAAAATACCTTGGATTAAATAATAAGAATGCACCATATACCAAGAT
*
7098670 GCTAAATTCACATATTGGTAC-T-ATTATACCTTAATATAAAATAAGAATGCCACATGCCTACAC
128 GCTAGATTCACATATT-G-ACATCATTATACCTTAATATAAAATAAGAATGCCACATGCCTACAC
* * * * * * * *
7098733 CTTAAAGTTTTTTTATTTCTCCAAATACAATAAAGTAGTCCTCACATTTAAGGTAACTAACCAAC
191 C-T-AAGTTTTTCTATATCTCCTAACACCACAAAGTAGTTCTCACCTTTAAGGTAACTAACCAAC
** ** * * * *
7098798 CAAATCCATTATAAGCGTGAAACAATTTCAAGTGGTCATAATTTAAAAAATAAAATTCTCAATTG
254 CAAATCCAACATAAGTATGAAACAATTCCATGTGGTCATGATTAAAAAAATAAAATTCTCAATTG
* * **
7098863 ACACCATTATACCTTAATGTATAATCGGAATGTCAAATTAACACATAAA-A-GGA-G---CATAA
319 ACACCATTATACCATAATGTACAATCGGAATGTCAAATTAACACATAAAGATATATGTTACATAA
* * **
7098922 GCACCATTATGCCTTTATTGCATAATAGGAATGCCATGTCAAATATATTAAATATCTATTTCATA
384 GCACCATTGTGCCTTTATTGCACAATAGGAATGCCATGTCAAATATATTAAATATCTATTTCGCA
* * * *
7098987 CCATTACACCTTCGATGGTAAAACAAGAATGCATCATATACAAAGTTGTTAGATTTACATATCGG
449 CCATTATACCTTCAATGGTAAAACAAGAATGCACCATATACAAAG-TGTTAGATTTATATATCGG
* * * * * *
7099052 TACTA-TATACCTTAATGTATGATAAGAATGCCACATGTCCACATCTTATAGTTTCTTTCCTTCT
513 CACCATTATACCTTAATGTATAATAGGAATGCCACATGTCCACATCTTATAGTTTATTTACTTCT
* * * * *
7099116 CCAAACACCACAAAGTAGTTGTCACCTCAAGTTAAACAACCAAATCCATCATAAGTATGAAACAA
578 CCAAACACCACAAAGTGGTTCTCA-CTTAAGGT-AACAACCAAATCCATCATGAGTATGAAACAA
7099181 AAGGAATTCTCAATTGA
641 AAGGAATTCTCAATTGA
** * * * * **
7099198 TTTTGTATATTCACATAAGCACTATTGTGCTTTTATTACGTAATAGGAATGCCACTTTAAATATA
1 TACTATATATTCATATAAGCACCATTGTGCCTTTATTACACAATAGGAATGCCACTTTAAATATA
* * * ** * *
7099263 TTAAATATTTATTTTACACCAAAATACCTTAGATTATTTACA-AAGAATGCACCATATACTAATA
66 TT-AATA--TATCTTGCACCAAAATACCTTGGATTAAATA-ATAAGAATGCACCATATACCAAGA
** ** * * * *
7099327 TATTAGATTCGTATATTGACA-CTATTATACCTTAATATATAATAAGAATGCTACATGCTTATAC
127 TGCTAGATTCACATATTGACATC-ATTATACCTTAATATAAAATAAGAATGCCACATGCCTACAC
* * * * *
7099391 CTTAATGTTTTTCTATTTTTCCGAACACCACAATGAAGTTC-CACCTTTAAGGTAACTAACCAAC
191 C-TAA-GTTTTTCTATATCTCCTAACACCACAAAGTAGTTCTCACCTTTAAGGTAACTAACCAAC
* * *
7099455 CAAATCCATCATAAGTATGAAACAATTCCATGTAGTCATGATTAAAAATA-AAAATTCTCAATTG
254 CAAATCCAACATAAGTATGAAACAATTCCATGTGGTCATGATTAAAAAAATAAAATTCTCAATTG
** * * * * * *
7099519 ACACCATTGCACCTTAATATGCAATCGGAATGTCAAATTAACACATAAAGGTATATGCTCAAATA
319 ACACCATTATACCATAATGTACAATCGGAATGTCAAATTAACACATAAAGATATATG-TTACATA
* * *
7099584 AGCACCATTGTGCTTTTATTTCACAATAGGAATTTCATAATTGGAATGTCATGTCAAAATATATT
383 AGCACCATTGTGCCTTTATTGCAC-------A----AT-A--GGAATGCCATGTC-AAATATATT
*
7099649 AAATATCTATTTCGCGCCATTATACCTTCAATGGTAAAACAAGAATGCACCATATACAAAGTGTT
433 AAATATCTATTTCGCACCATTATACCTTCAATGGTAAAACAAGAATGCACCATATACAAAGTGTT
*
7099714 AGATTTATATATCGGCACCATTATACCTTAATGTATAATAGAAATGCCACATGTCCACATCTTAT
498 AGATTTATATATCGGCACCATTATACCTTAATGTATAATAGGAATGCCACATGTCCACATCTTAT
** * * *
7099779 AGTTTATTTACTTCAGCAAATACCACAAAGTGGTTTTCACTTTAAGGTCAACAACCATATCCATC
563 AGTTTATTTACTTCTCCAAACACCACAAAGTGGTTCTCAC-TTAAGGT-AACAACCAAATCCATC
* *
7099844 ATGAGTATGAAACAAAAAGAATTCTTAATTGA
626 ATGAGTATGAAACAAAAGGAATTCTCAATTGA
* *
7099876 TATTATATATTCATATAAGCACCATTGCGCCTTTATTACACAATAGGAATGCCACTTTAAATATA
1 TACTATATATTCATATAAGCACCATTGTGCCTTTATTACACAATAGGAATGCCACTTTAAATATA
* * *
7099941 TT-A-ATATCTTGTACCAACATACCTTGGATTAAATAATAAGAATGAACCATATACCAAGATGCT
66 TTAATATATCTTGCACCAAAATACCTTGGATTAAATAATAAGAATGCACCATATACCAAGATGCT
* * * * * * * **
7100004 AGATTCACAAATTGACATCGTCATTCCTTAACT-TATAATAGGAATGTCTTATGCCTACACC-AA
131 AGATTCACATATTGACATCATTATACCTTAA-TATAAAATAAGAATGCCACATGCCTACACCTAA
*
7100067 GTTTTTCTATATCTCCTAACACCACAAAGTAGTTCTGACCTTTAAGGTAACTAACCAACC-AATC
195 GTTTTTCTATATCTCCTAACACCACAAAGTAGTTCTCACCTTTAAGGTAACTAACCAACCAAATC
* * **
7100131 CAACA-AGTGTATGGAACAATTCCATGTGGTCATGATTAAAAAAATGGAATTCTCAATATAGACA
260 CAACATA-AGTATGAAACAATTCCATGTGGTCATGATTAAAAAAATAAAATTCTCAAT-T-GACA
* * *
7100195 CCATTATACCATAATGTACAATTGGAATGTCTAATTAAAACATAAAGATATATGTTCACATAAGC
322 CCATTATACCATAATGTACAATCGGAATGTCAAATTAACACATAAAGATATATGTT-ACATAAGC
* *
7100260 ATCATTGTGCCTTTATTGCACAATAGGAATGCCATGTCAAATATATTTAATATCTATTTCGCACC
386 ACCATTGTGCCTTTATTGCACAATAGGAATGCCATGTCAAATATATTAAATATCTATTTCGCACC
*
7100325 ATTATACC-TCAATGGTAAAACAAGAATGCACCATATACAAAGATATTAGATTTATATAAT-GGC
451 ATTATACCTTCAATGGTAAAACAAGAATGCACCATATACAAAG-TGTTAGATTTATAT-ATCGGC
** ** * *
7100388 ACCATTATACCTTAATGTATAATAGGAATATCACATACCCACACCTTATAGTTTATTTACTTCTT
514 ACCATTATACCTTAATGTATAATAGGAATGCCACATGTCCACATCTTATAGTTTATTTACTTCTC
* *
7100453 TAAACACCACAAAGTGGTTCCCATCTTAAGGTAACCAACCAAATCCATCATGAGTATGAAACAAA
579 CAAACACCACAAAGTGGTTCTCA-CTTAAGGTAA-CAACCAAATCCATCATGAGTATGAAACAAA
*
7100518 AGGAATTGTCAATTGA
642 AGGAATTCTCAATTGA
* * *
7100534 TACTATATGTTCATGTAAGCACCATTGTGCCTTTATTACACAATAGGAATGCCACTTCAAATATA
1 TACTATATATTCATATAAGCACCATTGTGCCTTTATTACACAATAGGAATGCCACTTTAAATATA
* * *
7100599 TTAATATATAGTTTGCACCAAAATACCTTGAATTAAATAATAAGAATGCACCATATACCAAAATG
66 TTAATATAT--CTTGCACCAAAATACCTTGGATTAAATAATAAGAATGCACCATATACCAAGATG
* * * * * * * * *
7100664 TTATATTCACATATT-AGCACCATTATATCTTAATA-CAAACAGGAATGCCACATGCTTACACTT
129 CTAGATTCACATATTGA-CATCATTATACCTTAATATAAAATAAGAATGCCACATGCCTACAC-C
* * * * *
7100727 TACAATTTTT-T-TATTTCTTAAACACCACAAAGCAGTTCTCACCCTTAAGGTAACTAACCAACC
192 TA-AGTTTTTCTATATCTCCT-AACACCACAAAGTAGTTCTCACCTTTAAGGTAACTAACCAACC
* * * *
7100790 AAATCCATCATAAGTATGAAACAATTTCATGTGGTCATGATTAAAAAAACAAAATTCTCAATGGA
255 AAATCCAACATAAGTATGAAACAATTCCATGTGGTCATGATTAAAAAAATAAAATTCTCAATTGA
* * * * * *
7100855 CATCATTGTA-CATTAATGAACAATTGGAGTGTCAAATTATCACATAAAG-TATATGTTACATAA
320 CACCATTATACCA-TAATGTACAATCGGAATGTCAAATTAACACATAAAGATATATGTTACATAA
* * * ** * * * * * *
7100918 GCACCATTGTGCCTTTATTACACATTAAGAATGCCATAACAAATCTA-TCATTATGTATTTTGAA
384 GCACCATTGTGCCTTTATTGCACAATAGGAATGCCATGTCAAATATATTAAATATCTATTTCGCA
* * * * * * * *
7100982 CCATAATACCTT---TGATCAAATTATAGGAATGCACCATA-A-AACTAG-ATAAGATTCACATA
449 CCATTATACCTTCAATGGT-AAA--ACAAGAATGCACCATATACAA--AGTGTTAGATTTATATA
* * * *
7101041 TAGGCACCATTATACC-TAATGTATAATAGGAATGCCACATG-CCACACCCTTAAAATTTATTTA
509 TCGGCACCATTATACCTTAATGTATAATAGGAATGCCACATGTCCACA-TCTTATAGTTTATTTA
* * * * *
7101104 TTTTTTTTCTCTAAACAACACAAAGTGGTTTTCACCTTAA-GTAACCACTCAAATCCATCATGAG
573 -----CTTCTCCAAACACCACAAAGTGGTTCTCA-CTTAAGGTAACAAC-CAAATCCATCATGAG
7101168 T
631 T
7101169 TTCAAAAAAT
Statistics
Matches: 1655, Mismatches: 246, Indels: 136
0.81 0.12 0.07
Matches are distributed among these distances:
656 65 0.04
657 239 0.14
658 356 0.22
659 39 0.02
660 70 0.04
661 52 0.03
662 149 0.09
663 65 0.04
664 58 0.04
665 1 0.00
666 1 0.00
669 1 0.00
670 72 0.04
671 35 0.02
672 3 0.00
673 163 0.10
674 4 0.00
675 2 0.00
676 1 0.00
677 34 0.02
678 245 0.15
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32
Consensus pattern (657 bp):
TACTATATATTCATATAAGCACCATTGTGCCTTTATTACACAATAGGAATGCCACTTTAAATATA
TTAATATATCTTGCACCAAAATACCTTGGATTAAATAATAAGAATGCACCATATACCAAGATGCT
AGATTCACATATTGACATCATTATACCTTAATATAAAATAAGAATGCCACATGCCTACACCTAAG
TTTTTCTATATCTCCTAACACCACAAAGTAGTTCTCACCTTTAAGGTAACTAACCAACCAAATCC
AACATAAGTATGAAACAATTCCATGTGGTCATGATTAAAAAAATAAAATTCTCAATTGACACCAT
TATACCATAATGTACAATCGGAATGTCAAATTAACACATAAAGATATATGTTACATAAGCACCAT
TGTGCCTTTATTGCACAATAGGAATGCCATGTCAAATATATTAAATATCTATTTCGCACCATTAT
ACCTTCAATGGTAAAACAAGAATGCACCATATACAAAGTGTTAGATTTATATATCGGCACCATTA
TACCTTAATGTATAATAGGAATGCCACATGTCCACATCTTATAGTTTATTTACTTCTCCAAACAC
CACAAAGTGGTTCTCACTTAAGGTAACAACCAAATCCATCATGAGTATGAAACAAAAGGAATTCT
CAATTGA
Found at i:7131569 original size:30 final size:29
Alignment explanation
Indices: 7131535--7131614 Score: 70
Period size: 30 Copynumber: 2.7 Consensus size: 29
7131525 AATAAAAAAT
7131535 ATAAAAAAATTAAATTAAAATAATTTTAAA
1 ATAAAAAAATTAAATTAAAATAA-TTTAAA
* * * ** *
7131565 ATAAATATATTAAAATATTATAATTTGAA
1 ATAAAAAAATTAAATTAAAATAATTTAAA
* *
7131594 ATAAAGAGATTAAATTGAAAA
1 ATAAAAAAATTAAATT-AAAA
7131615 AAATATTTTA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
29 18 0.47
30 20 0.53
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (29 bp):
ATAAAAAAATTAAATTAAAATAATTTAAA
Found at i:7136649 original size:28 final size:28
Alignment explanation
Indices: 7136609--7136672 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
7136599 TTGGTACATG
*
7136609 ATCCCCCTATCTAAAGAGCAAAGTTCAA
1 ATCCCCCTATCTAAAGAGCAAAATTCAA
*
7136637 ATCCCCCTATCTAAAGAGCAAAATTCGA
1 ATCCCCCTATCTAAAGAGCAAAATTCAA
7136665 ATCCCCCT
1 ATCCCCCT
7136673 TCCCCCAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.36, C:0.33, G:0.09, T:0.22
Consensus pattern (28 bp):
ATCCCCCTATCTAAAGAGCAAAATTCAA
Found at i:7146768 original size:21 final size:24
Alignment explanation
Indices: 7146739--7146785 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 24
7146729 AGATTTTTTA
*
7146739 ATTACTAATGATTA-TA-GTATAT
1 ATTACTAATGATAAGTATGTATAT
7146761 ATTA-TAATGATAAGTATGTATAT
1 ATTACTAATGATAAGTATGTATAT
7146784 AT
1 AT
7146786 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 6 0.27
23 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTACTAATGATAAGTATGTATAT
Found at i:7148347 original size:10 final size:10
Alignment explanation
Indices: 7148324--7148374 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
7148314 AATAAAAAAA
7148324 TTAAAAT-TT
1 TTAAAATATT
*
7148333 ATTTAAATATT
1 -TTAAAATATT
*
7148344 TTTAAATAGTT
1 TTAAAATA-TT
*
7148355 TTAAAAAATT
1 TTAAAATATT
7148365 TTAAAATATT
1 TTAAAATATT
7148375 ATGTCGAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
10 25 0.71
11 10 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
TTAAAATATT
Found at i:7150456 original size:17 final size:18
Alignment explanation
Indices: 7150436--7150473 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
7150426 CATAAAGTGA
*
7150436 TTATTGAAATAATAT-TT
1 TTATTCAAATAATATGTT
*
7150453 TTATTCAAATATTATGTT
1 TTATTCAAATAATATGTT
7150471 TTA
1 TTA
7150474 CAAAATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (18 bp):
TTATTCAAATAATATGTT
Found at i:7158092 original size:15 final size:15
Alignment explanation
Indices: 7158072--7158102 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7158062 AAAAAAAGGG
7158072 CATAAATAAAGCTGC
1 CATAAATAAAGCTGC
*
7158087 CATAAATAAAGTTGC
1 CATAAATAAAGCTGC
7158102 C
1 C
7158103 TGAAACGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (15 bp):
CATAAATAAAGCTGC
Found at i:7166717 original size:24 final size:24
Alignment explanation
Indices: 7166689--7166734 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7166679 AGTAAAGGAG
*
7166689 TAAATGTATATAT-TTTTTTATATT
1 TAAAT-TATATATATATTTTATATT
*
7166713 TAAATTATTTATATATTTTATA
1 TAAATTATATATATATTTTATA
7166735 ATTAGAGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TAAATTATATATATATTTTATATT
Found at i:7173213 original size:2 final size:2
Alignment explanation
Indices: 7173206--7173236 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7173196 TTTTCAAAGT
7173206 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7173237 GTGCAGTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7180102 original size:2 final size:2
Alignment explanation
Indices: 7180095--7180119 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7180085 GTTTCAACAT
7180095 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
7180120 CAGCAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7180623 original size:2 final size:2
Alignment explanation
Indices: 7180616--7180649 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7180606 CCATCTCCCA
7180616 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7180650 GATCCCTGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7182002 original size:12 final size:12
Alignment explanation
Indices: 7181985--7182009 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7181975 TAGAGAATCC
7181985 GTTTTTTTTTTT
1 GTTTTTTTTTTT
7181997 GTTTTTTTTTTT
1 GTTTTTTTTTTT
7182009 G
1 G
7182010 GCCCTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (12 bp):
GTTTTTTTTTTT
Found at i:7185701 original size:92 final size:91
Alignment explanation
Indices: 7185468--7185858 Score: 266
Period size: 92 Copynumber: 4.1 Consensus size: 91
7185458 AATTTATAAG
* * * * ** * * * *
7185468 ATACGCAATAATTAACACATAAAATAAATTACAATGATTGAACTACGACTTATCAAATCTAAATT
1 ATACGCGATAATTGACATATCAAATAAATTACAATGATAAAATTAAGATTTGTCAAATCTAAATT
* * *
7185533 ATCTTTGTTTGTTATTTTA-ATTTATGAT
66 ATC--TGTTTATTA-TTTAGATTCATGAA
* * * * * * *
7185561 ATACACGGATCATTGACATATCAAATTAATTACCATAACAAAAGTAAGATTTGTCAAATCTAAAT
1 ATACGC-GATAATTGACATATCAAATAAATTACAATGATAAAATTAAGATTTGTCAAATCTAAAT
7185626 TATCATGTTTATTATTTAGATTCATGAA
65 TATC-TGTTTATTATTTAGATTCATGAA
* * * * * *
7185654 ATACGCGATAATTGACATGTCAGATAAATTATAATGATAAAATTAAGATTTATCAAATTTAGATT
1 ATACGCGATAATTGACATATCAAATAAATTACAATGATAAAATTAAGATTTGTCAAATCTAAATT
* *
7185719 GTTCTGTTTACTT-TTTTGA-TCTATGAGATA
66 -ATCTGTTTA-TTATTTAGATTC-AT--GA-A
* * *
7185749 CGTGATGATGCGATAACTGACATATCAAATAAATTACAATGATAAAATTAAGACTTGTCAAATCT
1 ----AT-ACGCGATAATTGACATATCAAATAAATTACAATGATAAAATTAAGATTTGTCAAATCT
* * * * ** *
7185814 AGATTGTCTCGCTTATTATTTTGATTTGTGAG
61 AAATTATCT-GTTTATTATTTAGATTCATGAA
7185846 ATACGCGATAATT
1 ATACGCGATAATT
7185859 AATAACTTTA
Statistics
Matches: 232, Mismatches: 50, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
91 2 0.01
92 73 0.31
93 31 0.13
94 49 0.21
95 1 0.00
98 2 0.01
99 7 0.03
100 66 0.28
101 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.38
Consensus pattern (91 bp):
ATACGCGATAATTGACATATCAAATAAATTACAATGATAAAATTAAGATTTGTCAAATCTAAATT
ATCTGTTTATTATTTAGATTCATGAA
Found at i:7185836 original size:100 final size:100
Alignment explanation
Indices: 7185658--7185850 Score: 264
Period size: 100 Copynumber: 1.9 Consensus size: 100
7185648 CATGAAATAC
* * * * * *
7185658 GCGATAATTGACATGTCAGATAAATTATAATGATAAAATTAAGATTTATCAAATTTAGATTGTTC
1 GCGATAACTGACATATCAAATAAATTACAATGATAAAATTAAGACTTATCAAATCTAGATTGTTC
*
7185723 TGTTTACTTTTTTGATCTATGAGATACGTGATGAT
66 TGCTTACTTTTTTGATCTATGAGATACGTGATGAT
*
7185758 GCGATAACTGACATATCAAATAAATTACAATGATAAAATTAAGACTTGTCAAATCTAGATTG-TC
1 GCGATAACTGACATATCAAATAAATTACAATGATAAAATTAAGACTTATCAAATCTAGATTGTTC
* *
7185822 TCGCTTA-TTATTTTGATTTGTGAGATACG
66 T-GCTTACTT-TTTTGATCTATGAGATACG
7185851 CGATAATTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
99 5 0.06
100 76 0.94
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (100 bp):
GCGATAACTGACATATCAAATAAATTACAATGATAAAATTAAGACTTATCAAATCTAGATTGTTC
TGCTTACTTTTTTGATCTATGAGATACGTGATGAT
Found at i:7199453 original size:30 final size:30
Alignment explanation
Indices: 7199409--7199477 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
7199399 GTGACATTGT
* *
7199409 CTTTTGCTCTTTTGTGGTACGAGGGAAACC
1 CTTTTCCTCCTTTGTGGTACGAGGGAAACC
*
7199439 CTTTTCCTCCTTTGTGGTACGAGGGAAATC
1 CTTTTCCTCCTTTGTGGTACGAGGGAAACC
7199469 CTTTTCCTC
1 CTTTTCCTC
7199478 TCTGTGAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.39
Consensus pattern (30 bp):
CTTTTCCTCCTTTGTGGTACGAGGGAAACC
Found at i:7213759 original size:18 final size:18
Alignment explanation
Indices: 7213720--7213760 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7213710 CTTGCTAAAT
*
7213720 CATCATCATCATTGGATT
1 CATCATCATCATTGGATG
*
7213738 CATCATCATCATTGTATG
1 CATCATCATCATTGGATG
7213756 CATCA
1 CATCA
7213761 GACATCTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (18 bp):
CATCATCATCATTGGATG
Found at i:7213797 original size:9 final size:9
Alignment explanation
Indices: 7213785--7213815 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7213775 ATCATCGCAA
7213785 TCATCATCT
1 TCATCATCT
*
7213794 TCATAATCT
1 TCATCATCT
7213803 TCATCATCT
1 TCATCATCT
7213812 TCAT
1 TCAT
7213816 AGGACTCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (9 bp):
TCATCATCT
Found at i:7223544 original size:19 final size:19
Alignment explanation
Indices: 7223517--7223554 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7223507 ATAGATATAA
*
7223517 TATTTAAAA-AAGCTTAAAC
1 TATTGAAAATAAG-TTAAAC
7223536 TATTGAAAATAAGTTAAAC
1 TATTGAAAATAAGTTAAAC
7223555 AAATTATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.32
Consensus pattern (19 bp):
TATTGAAAATAAGTTAAAC
Found at i:7224716 original size:15 final size:15
Alignment explanation
Indices: 7224698--7224727 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7224688 TGATGACGAT
*
7224698 GACGATGAAGATGAC
1 GACGATAAAGATGAC
7224713 GACGATAAAGATGAC
1 GACGATAAAGATGAC
7224728 ATGGATCCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.30, T:0.13
Consensus pattern (15 bp):
GACGATAAAGATGAC
Found at i:7256743 original size:2 final size:2
Alignment explanation
Indices: 7256736--7256762 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7256726 TCAGTGCACC
7256736 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
7256763 ACACACACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:7256767 original size:2 final size:2
Alignment explanation
Indices: 7256762--7256793 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7256752 CTCTCTCTCT
7256762 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7256794 TGAAGACCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7277938 original size:2 final size:2
Alignment explanation
Indices: 7277931--7277956 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7277921 CATAAAAATA
7277931 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
7277957 AGAGAGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:7277961 original size:2 final size:2
Alignment explanation
Indices: 7277956--7277987 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7277946 GTGTGTGTGT
7277956 GA GA GA GA GA GA GA GA GA GA GA GA GA G- GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7277988 GAAGTATGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7286461 original size:217 final size:217
Alignment explanation
Indices: 7286086--7286522 Score: 811
Period size: 217 Copynumber: 2.0 Consensus size: 217
7286076 AGCCGAGGGA
*
7286086 AGAAGTGGCATGGTCCTGCCACTTCCCCCTTTTGTCATAGCTACAGGAAAACTGGAAACAGGACC
1 AGAAGTGGCATGGTCCTGCCACCTCCCCCTTTTGTCATAGCTACAGGAAAACTGGAAACAGGACC
7286151 AAAATGCCTGCTCTGATTTGCCCTCTAATCTAATTCTTCTTGGACTGCTCTCAACACCCTTTTCA
66 AAAATGCCTGCTCTGATTTGCCCTCTAATCTAATTCTTCTTGGACTGCTCTCAACACCCTTTTCA
*
7286216 TTGATCTCATCAGTCATCACGTTAGGGTTATGTCATCAAACCATGAGCATCATGTTGTAAACACA
131 TTGATCGCATCAGTCATCACGTTAGGGTTATGTCATCAAACCATGAGCATCATGTTGTAAACACA
*
7286281 ACGGTGATACCATGCAACCGAT
196 ACGCTGATACCATGCAACCGAT
* *
7286303 AGAAGTGGCATGGTCCTGCTACCTCCCCCTTTTGTCATAGCTACAGGAAAACTGGAAACAGGACT
1 AGAAGTGGCATGGTCCTGCCACCTCCCCCTTTTGTCATAGCTACAGGAAAACTGGAAACAGGACC
* *
7286368 AAAATGCCTGCTCTGATTTGCCCTTTAATCTAATTCTTCTTGGACTGCTCTCAACCCCCTTTTCA
66 AAAATGCCTGCTCTGATTTGCCCTCTAATCTAATTCTTCTTGGACTGCTCTCAACACCCTTTTCA
7286433 TTGATCGCATCAGTCATCACGTTAGGGTTATGTCATCAAACCATGAGCATCATGTTGTAAACACA
131 TTGATCGCATCAGTCATCACGTTAGGGTTATGTCATCAAACCATGAGCATCATGTTGTAAACACA
7286498 ACGCTGATACCATGCAACCGAT
196 ACGCTGATACCATGCAACCGAT
7286520 AGA
1 AGA
7286523 GGCGAGGTTG
Statistics
Matches: 213, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
217 213 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (217 bp):
AGAAGTGGCATGGTCCTGCCACCTCCCCCTTTTGTCATAGCTACAGGAAAACTGGAAACAGGACC
AAAATGCCTGCTCTGATTTGCCCTCTAATCTAATTCTTCTTGGACTGCTCTCAACACCCTTTTCA
TTGATCGCATCAGTCATCACGTTAGGGTTATGTCATCAAACCATGAGCATCATGTTGTAAACACA
ACGCTGATACCATGCAACCGAT
Found at i:7289836 original size:70 final size:69
Alignment explanation
Indices: 7289727--7289916 Score: 245
Period size: 69 Copynumber: 2.7 Consensus size: 69
7289717 GTTTAAGGGT
* * * * * *
7289727 TATTGGGTTTATGAAAGTTTGCGGTGCTCATTTTAGATGTCAGATTTATTGAACAATGATGTTTG
1 TATTGGCTTTATGAAAATATGCGATGCTCATTGTGGATGTCA-ATTTATTGAACAATGATGTTTG
*
7289792 AGGTG
65 AGGCG
* * * *
7289797 TATTGGTTTTATGAAAATATGCGATGCTCATTGTGGATGTCAAATTATTGAACAATGGTGTTTGT
1 TATTGGCTTTATGAAAATATGCGATGCTCATTGTGGATGTCAATTTATTGAACAATGATGTTTGA
7289862 GGCG
66 GGCG
* *
7289866 TATTGGCTTTATGAAAATATGCGATGCCCCTTGTGGATGTCAAATTTATTG
1 TATTGGCTTTATGAAAATATGCGATGCTCATTGTGGATGTC-AATTTATTG
7289917 GCAAATTAAT
Statistics
Matches: 105, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
69 61 0.58
70 44 0.42
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.40
Consensus pattern (69 bp):
TATTGGCTTTATGAAAATATGCGATGCTCATTGTGGATGTCAATTTATTGAACAATGATGTTTGA
GGCG
Found at i:7294906 original size:18 final size:19
Alignment explanation
Indices: 7294867--7294906 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7294857 GGGATGGGTT
*
7294867 TAGGATTGGTTAATATCTC
1 TAGGATTGGTTAATAACTC
7294886 TAGGATTGGTT-ATAACTC
1 TAGGATTGGTTAATAACTC
7294904 TAG
1 TAG
7294907 TTTTACTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (19 bp):
TAGGATTGGTTAATAACTC
Found at i:7295878 original size:3 final size:3
Alignment explanation
Indices: 7295870--7295897 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7295860 TTGTATTGCT
7295870 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7295898 CGTCTATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7298909 original size:18 final size:18
Alignment explanation
Indices: 7298883--7298918 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7298873 AGACTCAATT
7298883 AAAGACTTTCTTTCTTCC
1 AAAGACTTTCTTTCTTCC
*
7298901 AAAGGCTTTCTTTCTTCC
1 AAAGACTTTCTTTCTTCC
7298919 CATTTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.28, G:0.08, T:0.44
Consensus pattern (18 bp):
AAAGACTTTCTTTCTTCC
Found at i:7299118 original size:2 final size:2
Alignment explanation
Indices: 7299111--7299135 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7299101 NNNNNNNNNN
7299111 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7299136 ATTACAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7304404 original size:2 final size:2
Alignment explanation
Indices: 7304393--7304422 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7304383 GATTGAAGTA
7304393 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7304423 ACCAGGGGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7306404 original size:2 final size:2
Alignment explanation
Indices: 7306397--7306421 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7306387 TGAATCATTA
7306397 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7306422 ATCTAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7332613 original size:2 final size:2
Alignment explanation
Indices: 7332606--7332633 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7332596 ATCATTCAAG
7332606 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7332634 ACACACACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7332638 original size:2 final size:2
Alignment explanation
Indices: 7332633--7332661 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7332623 CTCTCTCTCT
7332633 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
7332662 TCATACACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7336559 original size:2 final size:2
Alignment explanation
Indices: 7336552--7336577 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7336542 AGATTGAACA
7336552 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7336578 TTGACATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7341926 original size:18 final size:18
Alignment explanation
Indices: 7341898--7341933 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
7341888 GTATTTATTT
7341898 ATTTAAATTTTTTAAAAAA
1 ATTTAAA-TTTTTAAAAAA
7341917 ATTT-AATTTTTAAAAAA
1 ATTTAAATTTTTAAAAAA
7341934 TAAACTATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 2 0.12
19 4 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTAAATTTTTAAAAAA
Found at i:7344791 original size:12 final size:12
Alignment explanation
Indices: 7344774--7344799 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7344764 TTTCTCTATT
7344774 ATGTAAAAGATA
1 ATGTAAAAGATA
7344786 ATGTAAAAGATA
1 ATGTAAAAGATA
7344798 AT
1 AT
7344800 TCTCCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.15, T:0.27
Consensus pattern (12 bp):
ATGTAAAAGATA
Found at i:7349976 original size:38 final size:39
Alignment explanation
Indices: 7349908--7349993 Score: 90
Period size: 38 Copynumber: 2.2 Consensus size: 39
7349898 ATTATTTAAA
* * *
7349908 AAATATA-TTTTAATTTTTTATTATTATAAATATT-TTAT
1 AAATATATTTTTAATTATCTATTATTATAAAT-TTGATAT
7349946 AAATATATTTTTATATTATCTA-TATT-TAAATTTGATAT
1 AAATATATTTTTA-ATTATCTATTATTATAAATTTGATAT
7349984 AAATCATATT
1 AAAT-ATATT
7349994 AGATTATAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
37 2 0.05
38 19 0.46
39 14 0.34
40 6 0.15
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (39 bp):
AAATATATTTTTAATTATCTATTATTATAAATTTGATAT
Found at i:7352808 original size:11 final size:11
Alignment explanation
Indices: 7352792--7352816 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7352782 TCTTTATGCA
7352792 TGTGTGGTGTT
1 TGTGTGGTGTT
7352803 TGTGTGGTGTT
1 TGTGTGGTGTT
7352814 TGT
1 TGT
7352817 ACTTTCTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.44, T:0.56
Consensus pattern (11 bp):
TGTGTGGTGTT
Found at i:7356923 original size:2 final size:2
Alignment explanation
Indices: 7356916--7356944 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7356906 CTAAAGTATG
7356916 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
7356945 GTGCTGCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:7367312 original size:51 final size:51
Alignment explanation
Indices: 7367233--7367343 Score: 132
Period size: 51 Copynumber: 2.2 Consensus size: 51
7367223 ATTTTTCTTA
* * * * *
7367233 AAGTATTTTGAGTATTTTAGAGTGGTTTTTGGTATACGAAGAAAAATCTTT
1 AAGTATTTTAAGTATTTTAGAATAGTTTTTGATATACGAAGAAAAACCTTT
* * * *
7367284 GAGTATTTTAAGTATTTTGGAATAGTTTTTGATATATGAAGACAAACCTTT
1 AAGTATTTTAAGTATTTTAGAATAGTTTTTGATATACGAAGAAAAACCTTT
*
7367335 AAGCATTTT
1 AAGTATTTT
7367344 GAACATTTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.43
Consensus pattern (51 bp):
AAGTATTTTAAGTATTTTAGAATAGTTTTTGATATACGAAGAAAAACCTTT
Found at i:7367540 original size:22 final size:22
Alignment explanation
Indices: 7367497--7367566 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
7367487 TGCATAATTG
* *
7367497 GTTGATAAGCA-TAGCGTAACTA
1 GTTGATAAACATTA-CGTGACTA
7367519 GTTGATAAACATTACGTGACTA
1 GTTGATAAACATTACGTGACTA
* **
7367541 ATT-AGTAATACATTATATGACTA
1 GTTGA-TAA-ACATTACGTGACTA
7367564 GTT
1 GTT
7367567 TGTAGACATT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 22 0.56
23 16 0.41
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (22 bp):
GTTGATAAACATTACGTGACTA
Found at i:7367746 original size:23 final size:22
Alignment explanation
Indices: 7367720--7367771 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7367710 TCATATGATA
*
7367720 CTAAAAAATCAGTGACACAATGT
1 CTAAAAAAT-AATGACACAATGT
* *
7367743 CTAAAAACTAATGACATAATGT
1 CTAAAAAATAATGACACAATGT
*
7367765 TTAAAAA
1 CTAAAAA
7367772 TCAATAATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.25
Consensus pattern (22 bp):
CTAAAAAATAATGACACAATGT
Found at i:7370836 original size:25 final size:25
Alignment explanation
Indices: 7370808--7370870 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
7370798 CCAAATTTAA
*
7370808 GTCCTAAGCCGTAGTATTGGAGGTG
1 GTCCTAAGCCGTAGTAGTGGAGGTG
*
7370833 GTCCTAAGGCGTAGTAGTGGAGGTG
1 GTCCTAAGCCGTAGTAGTGGAGGTG
7370858 GTCCTAAGCCGTA
1 GTCCTAAGCCGTA
7370871 CATTGAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.21, C:0.17, G:0.37, T:0.25
Consensus pattern (25 bp):
GTCCTAAGCCGTAGTAGTGGAGGTG
Found at i:7375288 original size:226 final size:227
Alignment explanation
Indices: 7374859--7375304 Score: 698
Period size: 226 Copynumber: 2.0 Consensus size: 227
7374849 TAAGTGAGGC
* * *
7374859 CCATTTTAGTCCAATCCAAGCTTGAGGCCTGTTTGAAGTAATAGACTTTAAAAAAGGCCGGCCCA
1 CCATTTTAGTCCAATCCAAGCTTGAGGCCTGTTTGAAGGAACAGACTTTAAAAAAGGCAGGCCCA
* *
7374924 ATTCACATAAAAAAGTGTAGACTTATTTATTTCTTTTTCTTTTCTTTTTTTATCTTATTTTCGTA
66 ATTCACATAAAAAAGTGTAGACTTATTTATTTCTTTTACTTTTCTCTTTTTATCTTATTTTCGTA
*** * *
7374989 TTTATTTTTTTATTTTGAGTTTTTTTTTGGTTTATTTGATAAAGTTCAAATAAACATATAAAACA
131 TTTATTTTTTTATTCCCAGTTTTTGTTTGCTTTATTTGATAAAGTTCAAATAAACATATAAAACA
7375054 AGTTTAACATAAATAAATAAATAAAAACTCTG
196 AGTTTAACATAAATAAATAAATAAAAACTCTG
* * *
7375086 CCATTTTAGTCCAATCCTAGCTTGTGGCCTGTTTGAAGGAACAGACTTTAAAAGAGGCAGGCCCA
1 CCATTTTAGTCCAATCCAAGCTTGAGGCCTGTTTGAAGGAACAGACTTTAAAAAAGGCAGGCCCA
* *
7375151 ATTCACATAAAAATGTGT-GAACTTATTTATTTCTTTTACTTTTC-CTTTTTATCTTATTTTGGT
66 ATTCACATAAAAAAGTGTAG-ACTTATTTATTTCTTTTACTTTTCTCTTTTTATCTTATTTTCGT
* * **
7375214 ATTTATTTTTTTATTCCCAGTTTTTGTTTGCTTTATTTGATAAATTTGAAATAAACATATAAATT
130 ATTTATTTTTTTATTCCCAGTTTTTGTTTGCTTTATTTGATAAAGTTCAAATAAACATATAAAAC
7375279 AAGTTTAACATAAATAAATAAATAAA
195 AAGTTTAACATAAATAAATAAATAAA
7375305 TAAATAAAAA
Statistics
Matches: 199, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
226 100 0.50
227 99 0.50
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (227 bp):
CCATTTTAGTCCAATCCAAGCTTGAGGCCTGTTTGAAGGAACAGACTTTAAAAAAGGCAGGCCCA
ATTCACATAAAAAAGTGTAGACTTATTTATTTCTTTTACTTTTCTCTTTTTATCTTATTTTCGTA
TTTATTTTTTTATTCCCAGTTTTTGTTTGCTTTATTTGATAAAGTTCAAATAAACATATAAAACA
AGTTTAACATAAATAAATAAATAAAAACTCTG
Found at i:7375297 original size:4 final size:4
Alignment explanation
Indices: 7375288--7375312 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7375278 TAAGTTTAAC
7375288 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
7375313 AACTCTACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:7377123 original size:4 final size:4
Alignment explanation
Indices: 7377114--7377145 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
7377104 GTTTACTGAA
7377114 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7377146 GCAGCTCCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:7381068 original size:12 final size:12
Alignment explanation
Indices: 7381022--7381078 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 12
7381012 AAAATCTACA
7381022 AAAAAAGAAAAAG
1 AAAAAAG-AAAAG
7381035 AAAGATAACGATAAAG
1 AAA-A-AA-GA-AAAG
*
7381051 ATAAAAGAAAGAG
1 AAAAAAGAAA-AG
7381064 AAAAAAGAAAAG
1 AAAAAAGAAAAG
7381076 AAA
1 AAA
7381079 CATTTTTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
12 7 0.19
13 16 0.43
14 3 0.08
15 4 0.11
16 7 0.19
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:7382515 original size:37 final size:37
Alignment explanation
Indices: 7382442--7382516 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
7382432 TAAAATGTAT
* * * *
7382442 AGATTTACTTAGATGACTAATCACACGTTTATAAAAA
1 AGATTTACTTAGATGACCAATCACACCTTAAAAAAAA
*
7382479 AGATTTACTTAGATGACCAATCATACCTTAAAAAAAA
1 AGATTTACTTAGATGACCAATCACACCTTAAAAAAAA
7382516 A
1 A
7382517 TGGTGGTGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (37 bp):
AGATTTACTTAGATGACCAATCACACCTTAAAAAAAA
Found at i:7384785 original size:25 final size:25
Alignment explanation
Indices: 7384757--7384806 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7384747 TTTGTAGAAA
7384757 ATCCTGCATTTAACAAAAACACAGC
1 ATCCTGCATTTAACAAAAACACAGC
7384782 ATCCTGCATTTAACAAAAACACAGC
1 ATCCTGCATTTAACAAAAACACAGC
7384807 GTTTACGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.28, G:0.08, T:0.20
Consensus pattern (25 bp):
ATCCTGCATTTAACAAAAACACAGC
Found at i:7389627 original size:2 final size:2
Alignment explanation
Indices: 7389620--7389649 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7389610 ACAAAGTCTT
7389620 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7389650 AAAGAATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7390308 original size:2 final size:2
Alignment explanation
Indices: 7390301--7390337 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
7390291 AGTTGTGCTC
7390301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT ACT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
7390338 GATGTTGGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7390819 original size:13 final size:13
Alignment explanation
Indices: 7390801--7390844 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
7390791 ATGTTCGCCA
7390801 ACCTCCACCCTCC
1 ACCTCCACCCTCC
7390814 ACCTCCACCC-CC
1 ACCTCCACCCTCC
*
7390826 TCC-CCA--CTCC
1 ACCTCCACCCTCC
7390836 ACCTCCACC
1 ACCTCCACC
7390845 ACCGCCGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
9 1 0.04
10 4 0.16
11 6 0.24
12 4 0.16
13 10 0.40
ACGTcount: A:0.16, C:0.70, G:0.00, T:0.14
Consensus pattern (13 bp):
ACCTCCACCCTCC
Found at i:7390835 original size:22 final size:22
Alignment explanation
Indices: 7390802--7390844 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7390792 TGTTCGCCAA
7390802 CCTCCACCCTCCACCTCCACCC
1 CCTCCACCCTCCACCTCCACCC
7390824 CCTCC-CCACTCCACCTCCACC
1 CCTCCACC-CTCCACCTCCACC
7390845 ACCGCCGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.14, C:0.72, G:0.00, T:0.14
Consensus pattern (22 bp):
CCTCCACCCTCCACCTCCACCC
Found at i:7390900 original size:91 final size:89
Alignment explanation
Indices: 7390741--7390906 Score: 208
Period size: 91 Copynumber: 1.8 Consensus size: 89
7390731 TACCTATATT
* * ** *
7390741 ACTCCCCACCACCACCACCGCCGCCGCCACCTCCTAAATGCAACCATACCATGTTCGCCAACCTC
1 ACTCCCCACCACCACCACCGCCGCCACCACCACCTAAATGCAACCATACCATACTCGCCAACCCC
7390806 CACCCTCCACCTCCACCCCCTCCCC
66 CACCC-CCACCTCCACCCCCTCCCC
* * * * *
7390831 ACTCCACCTCCACCACCGCCGCCTCCACCACCACCTGAATGCAACCATACCATACT-GCCGCACC
1 ACTCC-CCACCACCACCACCGCCGCCACCACCACCTAAATGCAACCATACCATACTCGCC-AACC
7390895 CCCACCCCCACC
64 CCCACCCCCACC
7390907 CCCATGTAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
90 13 0.20
91 51 0.80
ACGTcount: A:0.22, C:0.58, G:0.07, T:0.12
Consensus pattern (89 bp):
ACTCCCCACCACCACCACCGCCGCCACCACCACCTAAATGCAACCATACCATACTCGCCAACCCC
CACCCCCACCTCCACCCCCTCCCC
Found at i:7395661 original size:2 final size:2
Alignment explanation
Indices: 7395654--7395693 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7395644 TTGCATTTGA
7395654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7395694 TCTTCTTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7404613 original size:45 final size:45
Alignment explanation
Indices: 7404528--7404618 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
7404518 ATACAAAAGA
**
7404528 GTTACCGACGTATAAACCTCGAAGATACAATGAAGTTCAGTGATT
1 GTTACCGACGTATAAACCTCGAAGATACAATGAAACTCAGTGATT
* * * *
7404573 GTTATCGATGTATAAACCTTGAAGATACAATGAAACTCAGTTATT
1 GTTACCGACGTATAAACCTCGAAGATACAATGAAACTCAGTGATT
7404618 G
1 G
7404619 ACAGCGTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (45 bp):
GTTACCGACGTATAAACCTCGAAGATACAATGAAACTCAGTGATT
Found at i:7418241 original size:2 final size:2
Alignment explanation
Indices: 7418234--7418263 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7418224 CGGAGGCAGA
7418234 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7418264 TCATATAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7423545 original size:5 final size:5
Alignment explanation
Indices: 7423535--7423565 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
7423525 GTCGACAATC
7423535 TATAA TATAA TATAA TATAA TATAA TA-AA TA
1 TATAA TATAA TATAA TATAA TATAA TATAA TA
7423566 AATTAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:7423844 original size:21 final size:21
Alignment explanation
Indices: 7423819--7423861 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7423809 CTGATGGTTG
7423819 AATTTAAGATTTT-TAAATTAA
1 AATTTAA-ATTTTATAAATTAA
* *
7423840 AATTTTAATTTTATAATTTAA
1 AATTTAAATTTTATAAATTAA
7423861 A
1 A
7423862 CTATTGAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATTTAAATTTTATAAATTAA
Found at i:7427101 original size:2 final size:2
Alignment explanation
Indices: 7427094--7427120 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7427084 CAACTTGAAT
7427094 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7427121 TAAGCATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7435997 original size:65 final size:67
Alignment explanation
Indices: 7435832--7436043 Score: 383
Period size: 67 Copynumber: 3.2 Consensus size: 67
7435822 GAGTCATGGA
* * *
7435832 AAATCAATCCTGTCAAGGCAGTCGCATATGGTGGCAACAAATTATCAAAGCCTAGCTTCAGATTA
1 AAATCAATCCTGTCAAGGCAATTGCATATGGTAGCAACAAATTATCAAAGCCTAGCTTCAGATTA
7435897 AC
66 AC
7435899 AAATCAATCCTGTCAAGGCAATTGCATATGGTAGCAACAAATTATCAAAGCCTAGCTTCAGATT-
1 AAATCAATCCTGTCAAGGCAATTGCATATGGTAGCAACAAATTATCAAAGCCTAGCTTCAGATTA
7435963 AC
66 AC
7435965 -AATCAATCCTGTCAAGGCAATTGCATATGGTAGCAACAAATTATCAAAGCCTAGCTTCAGATTA
1 AAATCAATCCTGTCAAGGCAATTGCATATGGTAGCAACAAATTATCAAAGCCTAGCTTCAGATTA
7436029 AC
66 AC
7436031 AAATCAATCCTGT
1 AAATCAATCCTGT
7436044 GATGCATCTT
Statistics
Matches: 140, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
65 63 0.45
66 4 0.03
67 73 0.52
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (67 bp):
AAATCAATCCTGTCAAGGCAATTGCATATGGTAGCAACAAATTATCAAAGCCTAGCTTCAGATTA
AC
Found at i:7437726 original size:16 final size:16
Alignment explanation
Indices: 7437686--7437728 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
7437676 ATTTTTTAAA
7437686 TTTTATTTAA-AATTT
1 TTTTATTTAATAATTT
7437701 TATCTT-TTTAATAATTT
1 T-T-TTATTTAATAATTT
7437718 TTTTATTTAAT
1 TTTTATTTAAT
7437729 GAAATTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
15 3 0.12
16 13 0.54
17 8 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTATTTAATAATTT
Found at i:7439451 original size:2 final size:2
Alignment explanation
Indices: 7439444--7439484 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
7439434 TACGTGATAC
*
7439444 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7439485 GATGTTCCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7449206 original size:2 final size:2
Alignment explanation
Indices: 7449199--7449230 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7449189 TGAATGTGAG
7449199 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7449231 CCTGTTGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7454217 original size:6 final size:6
Alignment explanation
Indices: 7454207--7454237 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7454197 ATTTGACTGG
*
7454207 AAGAAG AAGAAA AAGAAA AAGAAA AAGAAA A
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA A
7454238 CCCCAAAACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:7470776 original size:15 final size:15
Alignment explanation
Indices: 7470756--7470798 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
7470746 AGGATATCCA
*
7470756 GCAGCATTTTCATGT
1 GCAGCATTTTCATGG
*
7470771 GCAGCATTTTCACGG
1 GCAGCATTTTCATGG
7470786 GCAGCATTTTCAT
1 GCAGCATTTTCAT
7470799 TCTCTTCACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (15 bp):
GCAGCATTTTCATGG
Found at i:7509627 original size:3 final size:3
Alignment explanation
Indices: 7509621--7509652 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7509611 AATTTATAGT
*
7509621 TCG TCG TCG TCG TCG TCG TCG TCG TTG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
7509653 ATCAGTATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.31, G:0.31, T:0.38
Consensus pattern (3 bp):
TCG
Found at i:7513451 original size:20 final size:18
Alignment explanation
Indices: 7513433--7513468 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7513423 ACCTATTTTG
7513433 TTTA-TAAATATTATATT
1 TTTATTAAATATTATATT
*
7513450 TTTATTAAATATTAAATT
1 TTTATTAAATATTATATT
7513468 T
1 T
7513469 AAAAGACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATTAAATATTATATT
Found at i:7513931 original size:18 final size:18
Alignment explanation
Indices: 7513897--7513935 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7513887 GAATTGATTA
7513897 ATTAATTTATTAATAAAT
1 ATTAATTTATTAATAAAT
*
7513915 ATTATATTT-TTATTAAAT
1 ATTA-ATTTATTAATAAAT
7513933 ATT
1 ATT
7513936 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATTTATTAATAAAT
Found at i:7515340 original size:2 final size:2
Alignment explanation
Indices: 7515333--7515359 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7515323 GCTTTGTGTT
7515333 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7515360 GTTTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7527933 original size:69 final size:70
Alignment explanation
Indices: 7527822--7527967 Score: 242
Period size: 69 Copynumber: 2.1 Consensus size: 70
7527812 ATCAAAAGAG
* *
7527822 AATCCA-TGGCCAAAGTCTTTGCTACTATTTATGGAGTCAAACCTAGTGAGCGTCTCAGGTTGAT
1 AATCCACTGGCCAAAGTCTTTGCTACTATTTATGGAGTCAAACCTAGTGAGCCTATCAGGTTGAT
7527886 GTGAA
66 GTGAA
* *
7527891 AATCCACT-GCCAAAGTCTTTGCTACTATTTATGGAGTCAAACCTTGTGAGCCTATCAGGTTGCT
1 AATCCACTGGCCAAAGTCTTTGCTACTATTTATGGAGTCAAACCTAGTGAGCCTATCAGGTTGAT
7527955 GTGAA
66 GTGAA
7527960 AATCCACT
1 AATCCACT
7527968 ATCATGCATG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 71 0.99
70 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (70 bp):
AATCCACTGGCCAAAGTCTTTGCTACTATTTATGGAGTCAAACCTAGTGAGCCTATCAGGTTGAT
GTGAA
Found at i:7532220 original size:2 final size:2
Alignment explanation
Indices: 7532215--7532244 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7532205 GTGTGTCACT
7532215 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7532245 TATTTGAGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7541073 original size:2 final size:2
Alignment explanation
Indices: 7541066--7541097 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7541056 TTGATCTCTT
7541066 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7541098 AAGTACAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7567354 original size:3 final size:3
Alignment explanation
Indices: 7567346--7567375 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7567336 TCGCAGCAAT
*
7567346 GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7567376 AGTGAGGGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7572883 original size:2 final size:2
Alignment explanation
Indices: 7572876--7572909 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7572866 GCTAAAGGTT
* *
7572876 TA TA TA TA CA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7572910 AAGATTGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7573270 original size:25 final size:25
Alignment explanation
Indices: 7573242--7573298 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
7573232 TTAATTTTTT
7573242 TATATATAAATATATATTATTTATA
1 TATATATAAATATATATTATTTATA
* * *
7573267 TATATGTAAATATATATTATTTTTT
1 TATATATAAATATATATTATTTATA
7573292 TATATAT
1 TATATAT
7573299 TAAGAAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TATATATAAATATATATTATTTATA
Found at i:7574767 original size:40 final size:40
Alignment explanation
Indices: 7574730--7574848 Score: 132
Period size: 40 Copynumber: 3.0 Consensus size: 40
7574720 GTTATTTAAG
*
7574730 TAGTTGTTTGAATATTTGTTTTTAGTTATTTAAATTTATA
1 TAGTTGTTTGGATATTTGTTTTTAGTTATTTAAATTTATA
** * *
7574770 TTA-TTACTTGGATATTTGTGTTTAGTTATTTAACTTTATA
1 -TAGTTGTTTGGATATTTGTTTTTAGTTATTTAAATTTATA
* * * * *
7574810 TTGTTGTATGGATATTAGTTTTTCGTTATTTAAGTTTAT
1 TAGTTGTTTGGATATTTGTTTTTAGTTATTTAAATTTAT
7574849 GTTTAAGATT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.02
40 61 0.95
41 2 0.03
ACGTcount: A:0.24, C:0.03, G:0.14, T:0.59
Consensus pattern (40 bp):
TAGTTGTTTGGATATTTGTTTTTAGTTATTTAAATTTATA
Found at i:7593294 original size:2 final size:2
Alignment explanation
Indices: 7593287--7593315 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7593277 TAAAATACTA
7593287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7593316 AGTTGAAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7610499 original size:2 final size:2
Alignment explanation
Indices: 7610492--7610522 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7610482 TGATATTGTG
7610492 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7610523 GACCAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7614243 original size:22 final size:20
Alignment explanation
Indices: 7614200--7614251 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7614190 AATCAAAATT
* *
7614200 TATATATTAGTATCAAAAAA
1 TATATAATAGTAACAAAAAA
7614220 TATATAATAGTAACAACAACAA
1 TATATAATAGTAACAA-AA-AA
*
7614242 TATAAAATAG
1 TATATAATAG
7614252 AGACGGAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 14 0.52
21 2 0.07
22 11 0.41
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.29
Consensus pattern (20 bp):
TATATAATAGTAACAAAAAA
Found at i:7623448 original size:58 final size:58
Alignment explanation
Indices: 7623384--7623499 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
7623374 TTATTGATCA
7623384 GCCTCTATTATAAGTATATTTGTTATAAATCTTGATGAGAAGAATTTGAATACTAATT
1 GCCTCTATTATAAGTATATTTGTTATAAATCTTGATGAGAAGAATTTGAATACTAATT
* *
7623442 GCCTCTATTATAAGTATGTTTGTTATAAATCTTGATGAGAAGAATTTGAATATTAATT
1 GCCTCTATTATAAGTATATTTGTTATAAATCTTGATGAGAAGAATTTGAATACTAATT
7623500 CTTTTCTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (58 bp):
GCCTCTATTATAAGTATATTTGTTATAAATCTTGATGAGAAGAATTTGAATACTAATT
Done.