Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397953.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1258.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12718
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.25
Warning! 3738 characters in sequence are not A, C, G, or T
Found at i:3848 original size:171 final size:171
Alignment explanation
Indices: 3653--4844 Score: 1049
Period size: 171 Copynumber: 7.0 Consensus size: 171
3643 CTGTGTTTTA
* * * *
3653 AAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATCAATTTTAACTTGAATTTTTT
1 AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATTTTTT
* *
3718 TACATTTTTGATTAAAACATATTATAATTGAATGTTTACCTCGAGAAACATGAAGAGAAAGGC-T
66 TACATTTTTGATTAAAACAAATTATAATTGAATGTTTACCTTGAGAAACATGAAGA-AAAGGCAT
* * * *
3782 GTCATGGGCTAGAAAAGTCTATTTATAGTCACCCATTTCATT-
130 -TCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTCCTTC
* ** *
3824 AAAAGCTTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTAAATCTTTT
1 AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAAT-TTTT
** * * * ** * *
3889 TTACATAGTT-AGTTAAAAC-AGTCTATAATTGAATGTCTACCTTGAGAGATGTGAAAAAAAGCC
65 TTACATTTTTGA-TTAAAACAAAT-TATAATTGAATGTTTACCTTGAGAAACATGAAGAAAAGGC
* * * * *
3952 ATTCATTGACAAGGAAAGCCCATTTATAGTCATCCA-TGCCTTC
128 ATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTCCTTC
** * * *
3995 GAAAA-CCTTATTACTTGCTTTAAATGGTTTTATAATCTTATAATTTATTTTAGGTTAAATTCTT
1 -AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATT-TT
* * * * * *
4059 TTTACATTTTTTG-TTAAAATAGATTATGATT-AAGTGTTCACCTTAAGAAACGTGAAGAAAGAG
64 TTTACA-TTTTTGATTAAAACAAATTATAATTGAA-TGTTTACCTTGAGAAACATGAAGAAA-AG
* ** * * * * *
4122 CCATTCATTGATAAGAAAAGCCCGTTTATAGTCACCTATTT-TTTT
126 GCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTCCTTC
* * *
4167 AAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTCAAGTTAAATTGTTT
1 AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATT-TTT
* * * * * * * * * *
4232 TT-CATTTCTAATTAAACCAATTTATATTTGAATGTCTACCTTGGGAAGCTTGAAGAAAAAGCAA
65 TTACATTTTTGATTAAAACAAATTATAATTGAATGTTTACCTTGAGAAACATGAAGAAAAGGC-A
* * * * **
4296 TTCATTGACAAAAAAAGTGCATTTATAGTCACTCA-AGCCTTC
129 TTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTCCTTC
* * * * * *
4338 AGAAATG--TTGTTGCTCACGTTAAATAGTTTTATAATCTCATAATTTATTTT-AGTTCAATTTT
1 A-AAA-GCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATTTT
* * * * *
4400 TTTATATTTTTAGA-TAAAACAGACTATAATTGAATGTTTGCCTTAAGAAACATGAAGAAAAAGG
64 TTTACATTTTT-GATTAAAACAAATTATAATTGAATGTTTACCTTGAGAAACATGAAG-AAAAGG
** * * * * *
4464 CATTCATTGTAAAAAAAAGTCCATTTATA-ACAACTC-TTTACTTT
127 CATTCATTGGCAAGAAAAGTCCATTTATAGTC-ACCCATTTCCTTC
* * * * * * *
4508 AAAAGCCTTACTATTCACTTTAAATGATTTTATAATCTAATAACTAATTTTAAGCTAAATATTTT
1 AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATTTTTT
* * * * **
4573 TATACTTTTGGTTAGAACAAATTATAATTGAATGCCTATCC-TGAGAAACATGAAGAAAAGGCAT
66 TACATTTTTGATTAAAACAAATTATAATTGAATGTTTA-CCTTGAGAAACATGAAGAAAAGGCAT
* *
4637 TCATTGGCAAGAAAAGTCCATTTATAGTCTCCTA-TTCCTTC
130 TCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTCCTTC
* * * * * *
4678 AAAAGCCTTATTTCTCACTTTAAATGGTTTTGTAATCACAAAATTCATTTCAAGTTAAATTTTTT
1 AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATTTTTT
* * * *
4743 TACATTTTTAATTAAAA-AAATTATAATTGAATGTTTGTCTTTG-GAAACATGAAGAAAAAGCCA
66 TACATTTTTGATTAAAACAAATTATAATTGAATGTTT-ACCTTGAGAAACATGAAG-AAAAGGCA
* * *
4806 TTCATTGGTAAGAAAAGTCCATTCATAGTCATCCATTTC
129 TTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTC
4845 TNNNNNNNNN
Statistics
Matches: 810, Mismatches: 175, Indels: 72
0.77 0.17 0.07
Matches are distributed among these distances:
168 1 0.00
169 38 0.05
170 267 0.33
171 346 0.43
172 156 0.19
173 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (171 bp):
AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTAAATTTTTT
TACATTTTTGATTAAAACAAATTATAATTGAATGTTTACCTTGAGAAACATGAAGAAAAGGCATT
CATTGGCAAGAAAAGTCCATTTATAGTCACCCATTTCCTTC
Found at i:4189 original size:343 final size:337
Alignment explanation
Indices: 3602--4845 Score: 1228
Period size: 343 Copynumber: 3.6 Consensus size: 337
3592 CAATGTAAAG
* * * * ** *
3602 AAAAAGCCATTTATTGACTAA-AAAAGTCTATTTGTAGTCA-CCTGTGTTTTAAAAAGCCTTATT
1 AAAAAGCCATTCATTGAC-AAGAAAAGTCCATTTATAGTCATCC-ATGCCTTCAAAAGCCTTATT
* ** * *
3665 ACTCATTTTAAATGGTTTTATAATCTCATAATCAATTTTAACTTGAATTTTTTTACATTTTT-GA
64 ACTCACTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTAAATTTTTTTACATTTTTAG-
* ** * * *
3729 TTAAAACATATTATAATTGAATGTTTACCTCGAGAAACATGAAGAGAAAGGC-TGTCATGGGCT-
128 TTAAAACAGATTATAATTGAATGTTTACCTTAAGAAACATGAAGAAAAAGCCAT-TCAT-TG-TA
* * * * *
3792 AGAAAAGTCTATTTATAGTCACCCATTTCATTAAAAGCTTTATTACTTGCTTTAAATGGTTTTAT
190 AGAAAAGTCCATTTATAGTCACCTATTTCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
* *
3857 AATCTCATAATTGATTTTAAGTTAAATCTTTTTTACATAGTTAGTTAAAACAGTCTATAATTGAA
255 AATCTCATAATTGATTTTAAGTTAAAT-TTTTTTACAT-TTTAGTTAAAACAAT-TATAATTGAA
3922 TGTCTACCTTGAGAGATGTGAA
317 TGTCTACCTTGAGAGAT-TGAA
* *
3944 AAAAAGCCATTCATTGACAAGGAAAGCCCATTTATAGTCATCCATGCCTTCGAAAA-CCTTATTA
1 AAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCATCCATGCCTTC-AAAAGCCTTATTA
** * * *
4008 CTTGCTTTAAATGGTTTTATAATCTTATAATTTATTTTAGGTTAAATTCTTTTTACATTTTTTGT
65 CTCACTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTAAATT-TTTTTACATTTTTAGT
* * * * *
4073 TAAAATAGATTATGATT-AAGTGTTCACCTTAAGAAACGTGAAGAAAGAGCCATTCATTGATAAG
129 TAAAACAGATTATAATTGAA-TGTTTACCTTAAGAAACATGAAGAAAAAGCCATTCATTG-TAAG
* * *
4137 AAAAGCCCGTTTATAGTCACCTATTTTTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
192 AAAAGTCCATTTATAGTCACCTATTTCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
* * * *
4202 TCTCATAATTGATTTCAAGTTAAATTGTTTTT-CATTTCTAATTAAACCAATTTATATTTGAATG
257 TCTCATAATTGATTTTAAGTTAAATT-TTTTTACATTT-TAGTTAAAACAA-TTATAATTGAATG
* *
4266 TCTACCTTGGGAAGCTTGAA
319 TCTACCTTGAG-AGATTGAA
* * * * *
4286 GAAAAAGCAATTCATTGACAAAAAAAGTGCATTTATAGTCA-CTCAAGCCTTCAGAAATG--TTG
1 -AAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCATC-CATGCCTTCA-AAA-GCCTTA
* * * * *
4348 TTGCTCACGTTAAATAGTTTTATAATCTCATAATTTATTTT-AGTTCAATTTTTTTATATTTTTA
62 TTACTCACTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTAAATTTTTTTACATTTTTA
* * * *
4412 GATAAAACAGACTATAATTGAATGTTTGCCTTAAGAAACATGAAGAAAAAGGCATTCATTGTAAA
127 GTTAAAACAGATTATAATTGAATGTTTACCTTAAGAAACATGAAGAAAAAGCCATTCATTGT-AA
* * * * * * * *
4477 AAAAAGTCCATTTATA-ACAACTCTTTACTTTAAAAGCCTTACTATTCACTTTAAATGATTTTAT
191 GAAAAGTCCATTTATAGTCACCTATTT-CTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTAT
* * * * * *
4541 AATCTAATAACTAATTTTAAGCTAAATATTTTTATAC-TTTTGGTTAGAACAAATTATAATTGAA
255 AATCTCATAATTGATTTTAAGTTAAAT-TTTTT-TACATTTTAGTTAAAAC-AATTATAATTGAA
* * *
4605 TGCCTATCC-TGAGAAACATGAA
317 TGTCTA-CCTTGAGAGA-TTGAA
* * * * *
4627 GAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTC-TCCTATTCCTTCAAAAGCCTTATTT
1 AAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCATCC-ATGCCTTCAAAAGCCTTATTA
* * * * * *
4691 CTCACTTTAAATGGTTTTGTAATCACAAAATTCATTTCAAGTTAAATTTTTTTACATTTTTAATT
65 CTCACTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTAAATTTTTTTACATTTTTAGTT
* ** **
4756 AAAA-AAATTATAATTGAATGTTTGTCTTTGGAAACATGAAGAAAAAGCCATTCATTGGTAAGAA
130 AAAACAGATTATAATTGAATGTTTACCTTAAGAAACATGAAGAAAAAGCCATTCATT-GTAAGAA
*
4820 AAGTCCATTCATAGTCATCC-ATTTCT
194 AAGTCCATTTATAGTCA-CCTATTTCT
4846 NNNNNNNNNN
Statistics
Matches: 738, Mismatches: 130, Indels: 70
0.79 0.14 0.07
Matches are distributed among these distances:
338 1 0.00
339 4 0.01
340 149 0.20
341 198 0.27
342 146 0.20
343 238 0.32
344 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (337 bp):
AAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCATCCATGCCTTCAAAAGCCTTATTAC
TCACTTTAAATGGTTTTATAATCTCATAATTTATTTTAAGTTAAATTTTTTTACATTTTTAGTTA
AAACAGATTATAATTGAATGTTTACCTTAAGAAACATGAAGAAAAAGCCATTCATTGTAAGAAAA
GTCCATTTATAGTCACCTATTTCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTC
ATAATTGATTTTAAGTTAAATTTTTTTACATTTTAGTTAAAACAATTATAATTGAATGTCTACCT
TGAGAGATTGAA
Found at i:5493 original size:171 final size:171
Alignment explanation
Indices: 4963--5576 Score: 455
Period size: 171 Copynumber: 3.6 Consensus size: 171
4953 AAGAAATGGA
* * * * * * ** **
4963 TGACTATGAATGGACTTTTCTTACCAATGAATGGCTTCTTCTTCAAGTTTCCCAAGACAGACATT
1 TGACTATAAATGGACTTTTCTTGCCAATGAATGTCTTTTTTTTCATGTTTCTTAAGGTAGACATT
* ** * * * * * * *
5028 CAATTATAAT-TTTTTTAATTAAAAATGTAAAAAAATTCAACTTGAAATCAATTTTGTGATTACA
66 CAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAATTTAAAATAAATTATGAGATTATA
* * * * **********
5092 AAACCATTTAAAGTGAGAAATAAGGCTTNNNNNNNNNNAG-G
131 AAACTATTTAAAGCGAGTAACAAGGC-TACTAAAGGAAAGAG
* * * * *
5133 AGACTATAAATGGACTTTTCTTGCCAATGAATG-CCTTTTCTTCATGTTTCTTAGGGTAGGCATT
1 TGACTATAAATGGACTTTTCTTGCCAATGAATGTCTTTTTTTTCATGTTTCTTAAGGTAGACATT
* * ********** * *
5197 CAATTATAATCTGTTCTAACCAAAAATGTAAAAANNNNNNNNNNAAAATTAGTTATGAGATTATA
66 CAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAATTTAAAATAAATTATGAGATTATA
* * ** *
5262 AAACTATTTAAAGCGAGTAATAAGGTTTTTAAAGTAAAGAG
131 AAACTATTTAAAGCGAGTAACAAGGCTACTAAAGGAAAGAG
* * * * * *
5303 TTATTAAAAATGGACTTTTCTTACCAATGAATGTCTTTTTTTTCATGTTTCTTAAGGTAAATATT
1 TGACTATAAATGGACTTTTCTTGCCAATGAATGTCTTTTTTTTCATGTTTCTTAAGGTAGACATT
*
5368 CAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTTAATTTAAAATAAATTATGAGATTATA
66 CAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAATTTAAAATAAATTATGAGATTATA
* * * **
5433 AAACTATTTAACGTGAGTAACAAGGCTACTGAAGGATTGAG
131 AAACTATTTAAAGCGAGTAACAAGGCTACTAAAGGAAAGAG
* * * ** *
5474 TGACTATAAATGCACTTTTCTTGTCAATGAAT-TACTTTTTTTTCATGCTTCCCAAGGCAGACAT
1 TGACTATAAATGGACTTTTCTTGCCAATGAATGT-CTTTTTTTTCATGTTTCTTAAGGTAGACAT
* * *
5538 GCAATTATAAACTAG-TTTAACAAAAAATGTATAAAAATT
65 TCAATTATAATCT-GTTTTAACAAAAAATGTAAAAAAATT
5577 CAGCTTGAAA
Statistics
Matches: 342, Mismatches: 97, Indels: 9
0.76 0.22 0.02
Matches are distributed among these distances:
169 35 0.10
170 116 0.34
171 190 0.56
172 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.35
Consensus pattern (171 bp):
TGACTATAAATGGACTTTTCTTGCCAATGAATGTCTTTTTTTTCATGTTTCTTAAGGTAGACATT
CAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATTTAATTTAAAATAAATTATGAGATTATA
AAACTATTTAAAGCGAGTAACAAGGCTACTAAAGGAAAGAG
Found at i:5902 original size:170 final size:170
Alignment explanation
Indices: 5593--6211 Score: 581
Period size: 171 Copynumber: 3.6 Consensus size: 170
5583 GAAATCAATT
* * * * **
5593 ATGAGAATAAGTGACTATAAATGGGCTTTTCTTGTCAATGAATGGCTCTTTCTTACCATTTCCCA
1 ATGA-AATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCT-TTTTTTA-TATTTTTCA
* * * * * *
5658 AGGTAAACACTCAATCATAATCTATTTTAACCAAAAATGTAAAAAGAATTCAACCTAAAATAAAT
63 AGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATGAAT
*
5723 TATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGA
128 TATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTT-GA
**
5767 A-GGCATGAGTGACTATAAATGGGC-TTTCTTTGCCAATGAATGGCTTTTTTTATATTTTTCAAG
1 ATGAAATGAGTGACTATAAATGGGCTTTTC-TTGCCAATGAATGGCTTTTTTTATATTTTTCAAG
* * ** *
5830 GTAGACATTCAATTATAGA-CTGTTTTAACTAACTATGTAAAAAAAATTCAACTTAAAATGAAGT
65 GTAAACATTCAATTATA-ATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATGAATT
* * *
5894 ACGAGATTATAAAACCATTTAAAGTAAGTAATAAAGCTTTTA
129 ATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTGA
* * *
5936 ATGAAATGGGTGACTATAAATGGACTTTTCTTGCCAATG-ATAGCCTTTCTTTT-TATGTTTCTC
1 ATGAAATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAAT-GGCTTT-TTTTATAT-TTT-TC
* * * * *
5999 GAGGTAAACATTCAGTTATAATCTGTTTTAACCAAAAATAT-AAAAAAATTTAAGTTAAAATCG-
62 AAGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAAT-GA
* *
6062 ATTATGAGATTATAAAACCATTTAAAATGAGTAATAAGGCTTTTGA
126 ATTATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGC-TTTGA
* * ** * * * * * ** *
6108 A--AATACGAGTGACTACAAACAGACTTTTCTAGTCAATGAATGTCTTTTTCTTCACATTGCTCG
1 ATGAA-ATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCTTTTT-TT-ATATTTTTCA
** * * **
6171 AGACAAGCATTCAATTATATTCTGTTTTAATGAAAAATGTA
63 AGGTAAACATTCAATTATAATCTGTTTTAACCAAAAATGTA
6212 TTGGTACGAC
Statistics
Matches: 366, Mismatches: 62, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
169 4 0.01
170 136 0.37
171 145 0.40
172 77 0.21
173 3 0.01
174 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (170 bp):
ATGAAATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCTTTTTTTATATTTTTCAAGG
TAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATGAATTAT
GAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTGA
Found at i:6087 original size:171 final size:168
Alignment explanation
Indices: 5602--6122 Score: 552
Period size: 170 Copynumber: 3.0 Consensus size: 168
5592 TATGAGAATA
* * *** *
5602 AGTGACTATAAATGGGCTTTTCTTGTCAATGAATGGCTCTTTCTTACCA-TTTCCCAAGGTAAAC
1 AGTGACTATAAATGGGCTTTTCTTGCCAATG-ATAGC-CTTTCTTTTTATTTTCTCAAGGTAAAC
* * * * *
5666 ACTCAATCATAATCTATTTTAACCAAAAATGTAAAAAGAATTCAACCTAAAATAAATTATGAGAT
64 ATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAA-AATTCAACTTAAAAT-GATTATGAGAT
* * **
5731 TATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATG
127 TATAAAACCATTTAAAGTAAGTAATAAGGCTTT-TAAGAAATG
* *
5774 AGTGACTATAAATGGGC-TTTCTTTGCCAATGA-ATGGCTTT-TTTTATATTTT-TCAAGGTAGA
1 AGTGACTATAAATGGGCTTTTC-TTGCCAATGATA-GCCTTTCTTTT-TATTTTCTCAAGGTAAA
* ** * *
5835 CATTCAATTATAGA-CTGTTTTAACTAACTATGTAAAAAAAATTCAACTTAAAATGAAGTACGAG
63 CATTCAATTATA-ATCTGTTTTAACCAAAAATGT-AAAAAAATTCAACTTAAAATG-ATTATGAG
*
5899 ATTATAAAACCATTTAAAGTAAGTAATAAAGCTTTTAATGAAATG
125 ATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTTAA-GAAATG
* * *
5944 GGTGACTATAAATGGACTTTTCTTGCCAATGATAGCCTTTCTTTTTATGTTTCTCGAGGTAAACA
1 AGTGACTATAAATGGGCTTTTCTTGCCAATGATAGCCTTTCTTTTTAT-TTTCTCAAGGTAAACA
* * * *
6009 TTCAGTTATAATCTGTTTTAACCAAAAATATAAAAAAATTTAAGTTAAAATCGATTATGAGATTA
65 TTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAAT-GATTATGAGATTA
* * *
6074 TAAAACCATTTAAAATGAGTAATAAGGCTTTTGAA-AATACG
129 TAAAACCATTTAAAGTAAGTAATAAGGCTTTT-AAGAA-ATG
6115 AGTGACTA
1 AGTGACTA
6123 CAAACAGACT
Statistics
Matches: 290, Mismatches: 42, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
169 4 0.01
170 130 0.45
171 94 0.32
172 62 0.21
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (168 bp):
AGTGACTATAAATGGGCTTTTCTTGCCAATGATAGCCTTTCTTTTTATTTTCTCAAGGTAAACAT
TCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATGATTATGAGATTATA
AAACCATTTAAAGTAAGTAATAAGGCTTTTAAGAAATG
Found at i:9660 original size:171 final size:170
Alignment explanation
Indices: 9077--10439 Score: 1102
Period size: 171 Copynumber: 8.0 Consensus size: 170
9067 NNNNNNNNNN
* * * * * **
9077 TTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAAACTCAATTTAAATTCAATTATGCTATT
1 TTCAATTATAATCTGTTTTAACTAAAAATGT-AAAAAAA-TTAACTTAAAATCAATTATGAGATT
* * * *
9142 ATAAAATCATTTAAAGTAAGTAATAAGGCTTTTGAAGGAATAGGTGACTAT-CATGGACTTTTCT
64 ATAAAATCATTTAAAGCAAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCT
* * * * *
9206 TGCCAATGACTGTCC-TTTTCTTTACATTTCTCAGGGTAGACA
129 TGTCAATGAATG-CCTTTTTCTTCACGTTTCTCAAGGTAGACA
* * *
9248 TTCAGTTATAGTCTATTTTAAGC-AAAAATGTAAAAAAATCT-ACTTAAAATCAATTATGAGATT
1 TTCAATTATAATCTGTTTTAA-CTAAAAATGTAAAAAAAT-TAACTTAAAATCAATTATGAGATT
* * * * *
9311 ATAAAACCATTTAAA-AAGAGTAATAAGGCTTTCGAAGGTACGAGTGACTAT-AATGGACTTTTC
64 ATAAAATCATTTAAAGCA-AGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTC
* ** * * *
9374 TTATCAATGAATGATTTTTTCTTCATGTTT-TCTAAGGCAGATA
128 TTGTCAATGAATGCCTTTTTCTTCACGTTTCTC-AAGGTAGACA
* * * * * * *
9417 TTCAATTATAGTCTATTTTAACCAAAAATATAAAAACATTTAACTCAAAATTAATTATGAGATTA
1 TTCAATTATAATCTGTTTTAACTAAAAATGTAAAAA-AATTAACTTAAAATCAATTATGAGATTA
* * * * *
9482 TAAAATCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGGGTCACTATAACTGGGCTTTTCTT
65 TAAAATCATTTAAAGCAAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTT
** * * * * * *
9547 GTCAATGAATGCCCATTTCCTCATGTTTATCGAGATTGACA
130 GTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACA
* * * *
9588 TTCAATTATAATCTGTTCTAACTAAAAATGCAAGAAAAATTAACTTAAAATCAACTATAAGATTA
1 TTCAATTATAATCTGTTTTAACTAAAAATGTAA-AAAAATTAACTTAAAATCAATTATGAGATTA
* * *
9653 CAAAATCATTTAAAG-AGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTT-T
65 TAAAATCATTTAAAGCA-AGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCT
* ** * * *
9716 TAGCCAATGAATGGTTTTTTCTTCATGATTCTCAAGGTAAACA
129 T-GTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACA
* * * * * *
9759 TTTAATTACAATCTGTTTTAACAAAAAAATATAAAAAGATTCATCTTAAAATCAATTATGAGATT
1 TTCAATTATAATCTGTTTTAAC-TAAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATT
* ** * ** *
9824 ATAAAATCATTTAAAGCGAGTAATAAGGCTTTTAAAGTAAAAGGTGACTATAAAT-GAATATTTC
64 ATAAAATCATTTAAAGCAAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACT-TTTC
* * * *
9888 TTATCAATGAATGCCTTTTTCATCACGTTTCTCAAAGTAGGCA
128 TTGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACA
* * * ** * * * *
9931 TTCAATTATAATCTGCTTTAATTGAAAGCGCAAAAAAATCAACCTAAAATCAATTATGTGATTAT
1 TTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTAACTTAAAATCAATTATGAGATTAT
* * * * * *
9996 AAAACCATTTAAAGCAAATAATAAGGCTTTCGAAGGAATGGGTGGCTCTAAATAGACTTTTCTAG
66 AAAATCATTTAAAGCAAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
* * *
10061 TCAATAAATG-TTTTTTCCTTCACATTTCTCAAGGTAGACA
131 TCAATGAATGCCTTTTT-CTTCACGTTTCTCAAGGTAGACA
* * * * * *
10101 TTCAATTACAATCTGTTCTAA-TCAAAAATATAAAAATATTCAATTTTAAATCAATTATGAGATT
1 TTCAATTATAATCTGTTTTAACT-AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATT
* * * * * ** * * *
10165 ATAAAACCATTTAAAGCGAGTAACAAAGTTTTTAAAGAAATGAGTGACTATAAATAGACTTTT-T
64 ATAAAATCATTTAAAGCAAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCT
* * * * * * *
10229 ATGCCAATGAATACCTTTTTTTTCATGTTTCCCAAGGCAAACA
129 -TGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACA
* * * * * * * ***
10272 TTCAATTATAATCTATTCTAACCAAAGACGTAAAATTATTTAACTTAAAATCAATTATGAGANNN
1 TTCAATTATAATCTGTTTTAACTAAAAATGTAAAA-AAATTAACTTAAAATCAATTATGAGATTA
******* * * * *
10337 NNNNNNNATTTAAAGTAAGTAATAAGGCTTT-TAATGGAATGAGTGACTATAAATGGACTTCTCT
65 TAAAATCATTTAAAGCAAGTAATAAGGCTTTCGAA-GGAATGGGTGACTATAAATGGACTTTTCT
* * * **
10401 T-ACTAATGAATG-ATTTTTCTTCATGTTTCTTGAGGTAGA
129 TGTC-AATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGA
10440 TGATAACTCT
Statistics
Matches: 944, Mismatches: 218, Indels: 61
0.77 0.18 0.05
Matches are distributed among these distances:
168 4 0.00
169 139 0.15
170 224 0.24
171 433 0.46
172 142 0.15
173 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
TTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTAACTTAAAATCAATTATGAGATTAT
AAAATCATTTAAAGCAAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTTG
TCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACA
Found at i:10058 original size:513 final size:508
Alignment explanation
Indices: 9077--10333 Score: 1266
Period size: 513 Copynumber: 2.5 Consensus size: 508
9067 NNNNNNNNNN
* * * * * **
9077 TTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAAACTCAATTTAAATTCAATTATGCTATT
1 TTCAATTATAATCTGTTCTAACTAAAAATGT-AAAAAAA-TTAATTTAAAATCAATTATGAGATT
* * *
9142 ATAAAATCATTTAAAGTA-AGTAATAAGGCTTTTGAAGGAATAGGTGACTAT-CATGGACTTTTC
64 ATAAAATCATTTAAAG-AGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTT-
* * * * * *
9205 TT-GCCAATGACTGTCCTTTTCTTTACAT-TTCTCAGGGTAGACATTCAGTTATAGTCTATTTTA
127 TTAGCCAATGAATGT-TTTTTC-TT-CATGTTCTCAAGGTAAACATTCAATTATAATCTATTTTA
*
9268 AGCAAAAATGTAAAAAAATCTACTTAAAATCAATTATGAGATTATAAAACCATTTAAAAAGAGTA
189 AGCAAAAATATAAAAAAATCTACTTAAAATCAATTATGAGATTATAAAACCATTTAAAAAGAGTA
* ** * * *
9333 ATAAGGCTTTCGAAGGTACGAGTGACTATAATGGACTTTTCTTATCAATGAATGATTTTTTCTTC
254 ATAAGGCTTTCGAAAGTAAAAGTGACTATAATGGAATTTTCTTATCAATGAATGACTTTTTCATC
* * * * * * * * *
9398 ATGTTTTCTAAGGCAGATATTCAATTATAGTCTATTTTAACCAAAAATATAAAAACATTTAACTC
319 ACGTTTTCTAAAGCAGACATTCAATTATAATCTACTTTAACCAAAAACACAAAAACAATCAACTC
* * * *
9463 AAAATTAATTATGAGATTATAAAATCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGGGTCA
384 AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAATAACAAGGCTTTCGAAGGAATGGGTCA
* * * * * ** * *
9528 CTATAACTGGGCTTTTCTTGTCAATGAATGCCCATTTCC-TCATGTTTATCGAGATTGACA
449 CTATAAATAGACTTTTCTAGTCAATAAATG-CCATTTCCTTCACATTTATCAAGATAGACA
* * * *
9588 TTCAATTATAATCTGTTCTAACTAAAAATGCAAGAAAAATTAACTTAAAATCAACTATAAGATTA
1 TTCAATTATAATCTGTTCTAACTAAAAATGTAA-AAAAATTAATTTAAAATCAATTATGAGATTA
*
9653 CAAAATCATTTAAAGAGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTA
65 TAAAATCATTTAAAGAGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTA
* * *
9718 GCCAATGAATGGTTTTTTCTTCATGATTCTCAAGGTAAACATTTAATTACAATCTGTTTTAA-CA
130 GCCAATGAAT-GTTTTTTCTTCATG-TTCTCAAGGTAAACATTCAATTATAATCTATTTTAAGC-
* * **
9782 AAAAAATATAAAAAGAT-TCATCTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTA
192 -AAAAATATAAAAAAATCT-A-CTTAAAATCAATTATGAGATTATAAAACCATTTAAAAAGAGTA
* *
9846 ATAAGGCTTT-TAAAGTAAAAGGTGACTATAAAT-GAATATTTCTTATCAATGAATGCCTTTTTC
254 ATAAGGCTTTCGAAAGTAAAA-GTGACTAT-AATGGAAT-TTTCTTATCAATGAATGACTTTTTC
* * * *** * *
9909 ATCACG-TTTCTCAAAGTAGGCATTCAATTATAATCTGCTTTAATTGAAAGCGCAAAAA-AATCA
316 ATCACGTTTTCT-AAAGCAGACATTCAATTATAATCTACTTTAACCAAAAACACAAAAACAATCA
* *
9972 AC-CTAAAATCAATTATGTGATTATAAAACCATTTAAAGCAAATAATAAGGCTTTCGAAGGAATG
380 ACTC-AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAATAACAAGGCTTTCGAAGGAATG
** * *** * *
10036 GGTGGCTCTAAATAGACTTTTCTAGTCAATAAATGTTTTTTCCTTCACATTTCTCAAGGTAGACA
444 GGTCACTATAAATAGACTTTTCTAGTCAATAAATGCCATTTCCTTCACATTTATCAAGATAGACA
* * * *
10101 TTCAATTACAATCTGTTCTAA-TCAAAAATATAAAAATATTCAATTTTAAATCAATTATGAGATT
1 TTCAATTATAATCTGTTCTAACT-AAAAATGTAAAAAAATT-AATTTAAAATCAATTATGAGATT
* * * * * * * *
10165 ATAAAACCATTTAAAGCGAGTAACAAAGTTTTTAAAGAAATGAGTGACTATAAATAGAC-TTTTT
64 ATAAAATCATTTAAAGAGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTT
* * * *
10229 ATGCCAATGAATACCTTTTTT-TTCATGTTTCCCAAGGCAAACATTCAATTATAATCTATTCTAA
129 A-GCCAATGAAT--GTTTTTTCTTCATG-TTCTCAAGGTAAACATTCAATTATAATCTATTTTAA
* * ** ** *
10293 CCAAAGACGTAAAATTATTTAACTTAAAATCAATTATGAGA
190 GCAAAAATATAAAAAAATCT-ACTTAAAATCAATTATGAGA
10334 NNNNNNNNNN
Statistics
Matches: 614, Mismatches: 109, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
509 4 0.01
510 72 0.12
511 85 0.14
512 72 0.12
513 312 0.51
514 69 0.11
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (508 bp):
TTCAATTATAATCTGTTCTAACTAAAAATGTAAAAAAATTAATTTAAAATCAATTATGAGATTAT
AAAATCATTTAAAGAGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTAG
CCAATGAATGTTTTTTCTTCATGTTCTCAAGGTAAACATTCAATTATAATCTATTTTAAGCAAAA
ATATAAAAAAATCTACTTAAAATCAATTATGAGATTATAAAACCATTTAAAAAGAGTAATAAGGC
TTTCGAAAGTAAAAGTGACTATAATGGAATTTTCTTATCAATGAATGACTTTTTCATCACGTTTT
CTAAAGCAGACATTCAATTATAATCTACTTTAACCAAAAACACAAAAACAATCAACTCAAAATCA
ATTATGAGATTATAAAACCATTTAAAGCAAATAACAAGGCTTTCGAAGGAATGGGTCACTATAAA
TAGACTTTTCTAGTCAATAAATGCCATTTCCTTCACATTTATCAAGATAGACA
Found at i:10276 original size:341 final size:335
Alignment explanation
Indices: 9077--10333 Score: 1154
Period size: 341 Copynumber: 3.7 Consensus size: 335
9067 NNNNNNNNNN
* * * * * * **
9077 TTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAAACTCAATTTAAATTCAATTATGCTATT
1 TTCAATTACAATCTGTTTTAAC-AAAAATAT-AAAAACATTCAATTTAAAATCAATTATGAGATT
** * * * *
9142 ATAAAATCATTTAAAGTAAGTAATAAGGCTTTTGAAGGAATAGGTGACTAT-CATGGACTTTTCT
64 ATAAAATCATTTAAAGCGAGTAACAAGGCTTTTAAAGAAAT-GGTGACTATAAAT-GACTTTT-T
* * * ** * * * * *
9206 -TGCCAATGACTGTCC-TTTTCTTTACATTTCTCAGGGTAGACATTCAGTTATAGTCTATTTTAA
126 ATG-CAATGAATG-CCTTTTTCATCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTCTAA
* * *
9269 GC-AAAAATGTAAAAAAATCTACTTAAAATCAATTATGAGATTATAAAACCATTTAAA-AAGAGT
189 -CTAAAAACGCAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAA-A-T
* * * *
9332 AATAAGGCTTTCGAAGGTACGAGTGACTAT-AATGGACTTTTCTTA-TCAATGAATGATTTTTTC
251 AATAAGGCTTTCGAAGGAATGGGTGACTATAAATAGACTTTTC-TAGTCAATGAATG-TTTTTTC
** * *
9395 TTCATGTTT-TCTAAGGCAGATA
314 TTCACATTTCTC-AAGGTAGACA
* * * * * * *
9417 TTCAATTATAGTCTATTTTAACCAAAAATATAAAAACATTTAACTCAAAATTAATTATGAGATTA
1 TTCAATTACAATCTGTTTTAA-CAAAAATATAAAAACATTCAATTTAAAATCAATTATGAGATTA
* ** ** * * *
9482 TAAAATCATTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGGGTCACTATAACTGGGCTTTTCT-
65 TAAAATCATTTAAAGCGAGTAACAAGGCTTTTAAAGAAAT-GGTGACTATAAAT-GACTTTT-TA
** * * * * *
9546 TGTCAATGAATGCCCATTTCCTCATGTTTATCGAGATTGACATTCAATTATAATCTGTTCTAACT
127 TG-CAATGAATGCCTTTTTCATCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTCTAACT
* * * * * * *
9611 AAAAATGCAAGAAAAATTAACTTAAAATCAACTATAAGATTACAAAATCATTTAAAGAGAGTAAT
191 AAAAACGCAA-AAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGA-AATAAT
* * *
9676 AAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTAGCCAATGAATGGTTTTTTCTTCA
254 AAGGCTTTCGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT-GTTTTTTCTTCA
* *
9741 TGA-TTCTCAAGGTAAACA
318 -CATTTCTCAAGGTAGACA
* *
9759 TTTAATTACAATCTGTTTTAACAAAAAAATATAAAAAGATTC-ATCTTAAAATCAATTATGAGAT
1 TTCAATTACAATCTGTTTTAAC--AAAAATATAAAAACATTCAAT-TTAAAATCAATTATGAGAT
* * *
9823 TATAAAATCATTTAAAGCGAGTAATAAGGCTTTTAAAGTAAAAGGTGACTATAAATGAATATTTC
63 TATAAAATCATTTAAAGCGAGTAACAAGGCTTTTAAAG-AAATGGTGACTATAAATG-A-CTTT-
* * *
9888 TTAT-CAATGAATGCCTTTTTCATCACGTTTCTCAAAGTAGGCATTCAATTATAATCTGCTT-TA
124 TTATGCAATGAATGCCTTTTTCATCATGTTTCTCAAGGTAGACATTCAATTATAATCTG-TTCTA
* * * * *
9951 ATTGAAAGCGCAAAAAAATCAACCTAAAATCAATTATGTGATTATAAAACCATTTAAAGCAAATA
188 ACTAAAAACGCAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-AAATA
* * *
10016 ATAAGGCTTTCGAAGGAATGGGTGGCTCTAAATAGACTTTTCTAGTCAATAAATGTTTTTTCCTT
252 ATAAGGCTTTCGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAATGTTTTTT-CTT
10081 CACATTTCTCAAGGTAGACA
316 CACATTTCTCAAGGTAGACA
* * *
10101 TTCAATTACAATCTGTTCTAATCAAAAATATAAAAATATTCAATTTTAAATCAATTATGAGATTA
1 TTCAATTACAATCTGTTTTAA-CAAAAATATAAAAACATTCAATTTAAAATCAATTATGAGATTA
* * *
10166 TAAAACCATTTAAAGCGAGTAACAAAGTTTTTAAAGAAATGAGTGACTATAAATAGACTTTTTAT
65 TAAAATCATTTAAAGCGAGTAACAAGGCTTTTAAAGAAATG-GTGACTATAAAT-GACTTTTTAT
* ** * * * * *
10231 GCCAATGAATACCTTTTTTTTCATGTTTCCCAAGGCAAACATTCAATTATAATCTATTCTAACCA
128 G-CAATGAATGCCTTTTTCATCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTCTAACTA
* * * * *
10296 AAGACGTAAAATTATTTAACTTAAAATCAATTATGAGA
192 AAAACGCAAAA-AAATCAACTTAAAATCAATTATGAGA
10334 NNNNNNNNNN
Statistics
Matches: 748, Mismatches: 137, Indels: 62
0.79 0.14 0.07
Matches are distributed among these distances:
339 76 0.10
340 99 0.13
341 215 0.29
342 210 0.28
343 139 0.19
344 7 0.01
345 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (335 bp):
TTCAATTACAATCTGTTTTAACAAAAATATAAAAACATTCAATTTAAAATCAATTATGAGATTAT
AAAATCATTTAAAGCGAGTAACAAGGCTTTTAAAGAAATGGTGACTATAAATGACTTTTTATGCA
ATGAATGCCTTTTTCATCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTCTAACTAAAAA
CGCAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAAATAATAAGGCTT
TCGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAATGTTTTTTCTTCACATTTCTC
AAGGTAGACA
Found at i:11009 original size:21 final size:21
Alignment explanation
Indices: 10983--11026 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
10973 AATTGATGTG
10983 ATTGAATTTTTTGTTGGTTTT
1 ATTGAATTTTTTGTTGGTTTT
11004 ATTGAATTTTTTGTTGGTTTT
1 ATTGAATTTTTTGTTGGTTTT
11025 AT
1 AT
11027 GTTAAGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.18, T:0.66
Consensus pattern (21 bp):
ATTGAATTTTTTGTTGGTTTT
Found at i:11916 original size:171 final size:168
Alignment explanation
Indices: 11423--11917 Score: 427
Period size: 171 Copynumber: 2.9 Consensus size: 168
11413 NNNNGTGAGT
* * ** *
11423 AATAAGGCTTTTGAAGGAATGGGTGACTATGAATGGACTTTTCTTACCAATGAATACCTTTTTCT
1 AATAAGACCTTTGAAGGAATGGGCAACTA-GAATGGACTTTTCTTACCAATGAAT-CTTTTTTCT
*
11488 TTATGTTT-TCCAAGACAGACATTCAATTATAATCTGTTCTAACTAAAGATGTAAAAATATTCAA
64 TCATGTTTCT-CAAGACAGACATTCAATTATAATCTGTTCTAAC-AAAGATGTAAAAATATTCAA
* * *
11552 CGTAAAATTAATTATGAGATTATAAAACCACTTAAATCATGA
127 CTTAAAATCAATTATGAGATTATAAAACCACTTAAAGCATGA
* * * ********* * * *
11594 AATAAGGCTTTTAAAGGAATGGGNNNNNNNNNNTGGACTTTTCTTGCCAATGAATATCTTTTTCC
1 AATAAGACCTTTGAAGGAATGGG-CAACTAGAATGGACTTTTCTTACCAATGAATCT-TTTTTCT
** * * *
11659 TCATGTTTC-CTAAGGTAAACATTCAATTATAATTTGTTCTAACCAAAGATGTAAAACTATTCAA
64 TCATGTTTCTC-AAGACAGACATTCAATTATAATCTGTTCTAA-CAAAGATGTAAAAATATTCAA
********** *
11723 CTTAAANNNNNNNNNNAGATTATAAAACCATTTAAAGCATGA
127 CTTAAAATCAATTATGAGATTATAAAACCACTTAAAGCATGA
* * * * *
11765 AATATGACCTTTGAAGGAATGGACAACTAGAAATAGACTTCTCTTTCCAATGAATGCTTTTTTCT
1 AATAAGACCTTTGAAGGAATGGGCAACTAG-AATGGACTTTTCTTACCAATGAAT-CTTTTTTCT
* * * * *
11830 TCATGTTTCTCAAGACAGATATTCAATTGTAGTCTGTTTTAAGCAAAAATGTAAAAATATTCAAC
64 TCATGTTTCTCAAGACAGACATTCAATTATAATCTGTTCTAA-CAAAGATGTAAAAATATTCAAC
11895 TTAAAATCAATTATGAGATTATA
128 TTAAAATCAATTATGAGATTATA
11918 NNNNNNNNNN
Statistics
Matches: 243, Mismatches: 73, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
170 1 0.00
171 239 0.98
172 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.34
Consensus pattern (168 bp):
AATAAGACCTTTGAAGGAATGGGCAACTAGAATGGACTTTTCTTACCAATGAATCTTTTTTCTTC
ATGTTTCTCAAGACAGACATTCAATTATAATCTGTTCTAACAAAGATGTAAAAATATTCAACTTA
AAATCAATTATGAGATTATAAAACCACTTAAAGCATGA
Done.