Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397966.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1272.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1590
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.25

Warning! 583 characters in sequence are not A, C, G, or T


Found at i:1325 original size:170 final size:160

Alignment explanation


    Indices: 1026--1333  Score: 316
    Period size: 170  Copynumber: 1.9  Consensus size: 160

       1016 NNNNNNNNNN

                     *        * *                   *                        
       1026 TTTAAATGATTTTATAATGTCATAATTGATTTTAAGTTGAGTTTGTTTACATATTTCATTAAAAC
          1 TTTAAATGAGTTTATAATCTAATAATTGATTTTAAGTTGAATTTGTTTACATATTTCATTAAAAC

                    *                                            *           
       1091 AGACTATATTTGAATGTCGACCTCAAGAAACGTGAAGAAAAATACATTCATTGGTAAGAAAAGTC
         66 AGACTATAATTGAATGTCGACCTCAAGAAACGTGAAGAAAAATACATTCATTGATAAGAAAAGTC

                                                     
       1156 CATTTATANNNNNNNNNNNCTTCAAAAGTCTTATTACTCGC
        131 CATTTATA-----------CTTCAAAAGTCTTATTACTCGC

                                   *         *          *       *   *    *  *
       1197 TTTAAAT-AGTTTATAATCTAATGATTGATTTTGAGTTGAATTTTTTTACATTTTTTATTAGAAG
          1 TTTAAATGAGTTTATAATCTAATAATTGATTTTAAGTTGAATTTGTTTACATATTTCATTAAAAC

              *                           *                   *        *     
       1261 AGGCTATAATTGAATGTCTG-CCTCAAGAACCGTGAAGAAAAA-AGCATTTATTGATAATAAAAG
         66 AGACTATAATTGAATGTC-GACCTCAAGAAACGTGAAGAAAAATA-CATTCATTGATAAGAAAAG

              *       
       1324 TCTATTTATA
        129 TCCATTTATA

       1334 GCCTCCCNNN


Statistics
Matches: 117,  Mismatches: 18, Indels: 5
        0.84            0.13        0.04

Matches are distributed among these distances:
 169    1  0.01
 170  108  0.92
 171    8  0.07

ACGTcount: A:0.35, C:0.10, G:0.13, T:0.38


Consensus pattern (160 bp):   
TTTAAATGAGTTTATAATCTAATAATTGATTTTAAGTTGAATTTGTTTACATATTTCATTAAAAC
AGACTATAATTGAATGTCGACCTCAAGAAACGTGAAGAAAAATACATTCATTGATAAGAAAAGTC
CATTTATACTTCAAAAGTCTTATTACTCGC
Done.