Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397967.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1273.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.29

Warning! 239 characters in sequence are not A, C, G, or T


Found at i:513 original size:170 final size:161

Alignment explanation


    Indices: 310--618  Score: 350
    Period size: 170  Copynumber: 1.9  Consensus size: 161

        300 NNNNNNNNNN

                    *  *         *                         * *               
        310 TCAAATTTCAATCAATTTTGATATTAAAAAACCATTTAAAGTGAGTATTCTGGCTTTTGAAGAAA
          1 TCAAATTTAAACCAATTTTGAGATTAAAAAACCATTTAAAGTGAGTAATATGGCTTTTGAAGAAA

                     *              *                 *               *      
        375 TGAGTGACTGTAAATCGACTTTTCTTGCCAATGAA-CCTTTTTCTTCATGATTCTGGAGGTTGAC
         66 TGAGTGACTATAAATCGACTTTTCCTGCCAATGAAGCCTTTTCCTTCATGATTCTGGACGTTGAC

                                                     
        439 ATTCAATTNNNNNNNNNNTTAAAGAAAAATGTACAAAGAAT
        131 ATTCAATT----------TTAAAGAAAAATGTACAAAGAAT

                                     **          *                      * *  
        480 TCAAATTTAAACCAATTTTGAGATTGTAAAACCATTTCAAGTGAGTAATATGGCTTTTGACGGAA
          1 TCAAATTTAAACCAATTTTGAGATTAAAAAACCATTTAAAGTGAGTAATATGGCTTTTGAAGAAA

              *  *         *                                   *             
        545 TGGGTTACTATAAATGGACTTTTCCTGCCAATGAATGCCTTTTCCTTCATGTTTCTGGACGTTGA
         66 TGAGTGACTATAAATCGACTTTTCCTGCCAATGAA-GCCTTTTCCTTCATGATTCTGGACGTTGA

                     
        610 CATTCAATT
        130 CATTCAATT

        619 ANNNNNNNNN


Statistics
Matches: 119,  Mismatches: 18, Indels: 2
        0.86            0.13        0.01

Matches are distributed among these distances:
 170   85  0.71
 172   34  0.29

ACGTcount: A:0.31, C:0.14, G:0.16, T:0.36


Consensus pattern (161 bp):   
TCAAATTTAAACCAATTTTGAGATTAAAAAACCATTTAAAGTGAGTAATATGGCTTTTGAAGAAA
TGAGTGACTATAAATCGACTTTTCCTGCCAATGAAGCCTTTTCCTTCATGATTCTGGACGTTGAC
ATTCAATTTTAAAGAAAAATGTACAAAGAAT
Done.